Wall clock time and date at job start Mon Mar 30 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00050 * 2 1 4 4 H 1.48499 * 109.47551 * 270.00521 * 3 2 1 5 5 H 1.48502 * 109.47242 * 30.00727 * 3 2 1 6 6 H 1.48498 * 109.47102 * 150.00491 * 3 2 1 7 7 C 1.37876 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00212 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00082 * 179.97438 * 7 2 1 10 10 S 1.81401 * 109.47534 * 180.02562 * 9 7 2 11 11 C 1.81398 * 103.00140 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46953 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.67311 * 308.23058 * 12 11 10 14 14 C 1.54889 * 110.91804 * 71.57935 * 12 11 10 15 15 C 1.54268 * 104.19728 * 156.33023 * 14 12 11 16 16 H 1.08998 * 117.41067 * 116.36929 * 15 14 12 17 17 C 1.53873 * 106.59675 * 336.38656 * 15 14 12 18 18 H 1.09005 * 121.32922 * 138.06223 * 17 15 14 19 19 C 1.54264 * 106.60152 * 0.02562 * 17 15 14 20 20 C 1.52992 * 118.19726 * 270.99841 * 15 14 12 21 21 F 1.39896 * 117.46235 * 201.21477 * 20 15 14 22 22 F 1.39907 * 117.46247 * 346.01594 * 20 15 14 23 23 H 0.97001 * 120.00216 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46962 * 59.99922 * 9 7 2 25 25 H 1.09000 * 109.47095 * 300.00422 * 9 7 2 26 26 H 1.08999 * 109.47412 * 59.99774 * 11 10 9 27 27 H 1.09000 * 109.47075 * 300.00008 * 11 10 9 28 28 H 1.08998 * 110.48466 * 275.00921 * 14 12 11 29 29 H 1.08999 * 110.48474 * 37.64966 * 14 12 11 30 30 H 1.08998 * 110.49036 * 264.93341 * 19 17 15 31 31 H 1.09000 * 110.49063 * 142.28381 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 16 4.1161 -2.9044 -0.0025 11 6 5.9186 -2.7000 -0.0023 12 6 6.5878 -4.0758 -0.0040 13 1 6.1887 -4.6989 0.7963 14 6 6.4186 -4.7714 -1.3776 15 6 7.5882 -5.7754 -1.4399 16 1 7.3378 -6.8354 -1.4809 17 6 8.6734 -5.2457 -0.4863 18 1 9.2226 -5.9157 0.1753 19 6 8.1253 -3.9387 0.1228 20 6 8.9208 -5.2978 -2.0202 21 9 9.8055 -6.2732 -2.4922 22 9 8.9207 -4.0910 -2.7282 23 1 -0.4850 0.8400 0.0004 24 1 3.8751 -0.6805 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 6.2217 -2.1492 0.8881 27 1 6.2217 -2.1477 -0.8918 28 1 5.4636 -5.2947 -1.4251 29 1 6.4967 -4.0440 -2.1856 30 1 8.4786 -3.0766 -0.4429 31 1 8.4160 -3.8544 1.1699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917847105.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:33 Heat of formation + Delta-G solvation = -84.246592 kcal Electronic energy + Delta-G solvation = -15534.194801 eV Core-core repulsion = 12577.947743 eV Total energy + Delta-G solvation = -2956.247058 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.80501 -47.50044 -39.26145 -33.08663 -33.02160 -29.38305 -28.63775 -26.85265 -22.69064 -21.85855 -20.45354 -20.22819 -17.97319 -17.10181 -16.86365 -16.06633 -15.48971 -15.36075 -14.33311 -14.23731 -14.11168 -13.78944 -13.52988 -13.40850 -12.95928 -12.81120 -12.42091 -12.28871 -11.75108 -11.61115 -11.21328 -11.06175 -10.82904 -10.43764 -10.32581 -9.99825 -9.89717 -9.64741 -8.98574 -8.72989 -6.82825 -6.19576 -4.21692 2.43014 2.71485 2.84801 3.19911 3.27540 3.28060 3.66138 3.93852 3.99561 4.29417 4.41798 4.72661 4.86115 4.92773 5.05152 5.11748 5.16774 5.34756 5.51649 5.62907 5.66630 5.75913 5.83587 5.90756 6.07959 6.29359 6.56664 6.67731 7.41335 8.28819 8.83248 9.36299 10.92590 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.049116 B = 0.004328 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.945500 B = 6468.448200 C = 6620.185630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.084 0.916 9 C 0.047 3.953 10 S -0.270 6.270 11 C -0.092 4.092 12 C -0.067 4.067 13 H 0.091 0.909 14 C -0.092 4.092 15 C -0.155 4.155 16 H 0.134 0.866 17 C -0.155 4.155 18 H 0.135 0.865 19 C -0.092 4.092 20 C 0.206 3.794 21 F -0.162 7.162 22 F -0.158 7.158 23 H 0.268 0.732 24 H 0.034 0.966 25 H 0.029 0.971 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.388 -9.340 -0.840 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.125 4.125 3 Si 0.705 3.295 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.553 4.553 8 H 0.102 0.898 9 C -0.101 4.101 10 S -0.042 6.042 11 C -0.240 4.240 12 C -0.086 4.086 13 H 0.110 0.890 14 C -0.130 4.130 15 C -0.174 4.174 16 H 0.151 0.849 17 C -0.174 4.174 18 H 0.153 0.847 19 C -0.131 4.131 20 C 0.169 3.831 21 F -0.142 7.142 22 F -0.138 7.138 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 17.645 -10.138 -0.873 20.369 hybrid contribution 1.266 2.031 -0.267 2.408 sum 18.911 -8.107 -1.140 20.607 Atomic orbital electron populations 1.69864 1.06152 1.27290 1.49606 1.24859 0.94749 0.98728 0.94159 0.86806 0.80279 0.83630 0.78806 1.19889 1.20792 1.19132 1.20492 0.86966 0.95291 1.52560 0.89838 1.21404 1.01070 0.88595 0.98983 1.86687 1.00582 1.19045 1.97921 1.23306 0.97373 0.99049 1.04304 1.21988 0.93315 0.95293 0.98015 0.89025 1.22109 0.96361 0.96719 0.97769 1.24675 0.90410 1.02432 0.99853 0.84864 1.24988 1.01283 1.01560 0.89603 0.84729 1.22100 0.94604 0.95012 1.01412 1.20678 0.94206 0.77076 0.91149 1.93005 1.70071 1.61252 1.89889 1.93003 1.96729 1.43982 1.80133 0.92221 0.94801 0.95243 0.90573 0.90690 0.89036 0.89993 0.90170 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.89 13.96 55.43 0.77 -26.12 16 2 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 3 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.51 -14.62 9.68 -34.44 -0.33 -14.95 16 8 H 0.08 2.60 7.96 -52.48 -0.42 2.19 16 9 C 0.05 1.13 4.77 36.01 0.17 1.30 16 10 S -0.27 -5.43 21.38 -107.50 -2.30 -7.73 16 11 C -0.09 -1.36 5.42 37.16 0.20 -1.15 16 12 C -0.07 -0.78 2.86 -88.64 -0.25 -1.03 16 13 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 14 C -0.09 -1.06 5.68 -25.07 -0.14 -1.21 16 15 C -0.15 -1.51 6.84 -89.51 -0.61 -2.12 16 16 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 17 C -0.16 -1.40 7.02 -88.20 -0.62 -2.01 16 18 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 19 C -0.09 -0.88 5.99 -25.08 -0.15 -1.03 16 20 C 0.21 2.26 5.22 -25.43 -0.13 2.13 16 21 F -0.16 -1.88 17.60 2.25 0.04 -1.84 16 22 F -0.16 -2.03 16.34 2.25 0.04 -1.99 16 23 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.03 0.80 7.20 -51.92 -0.37 0.42 16 25 H 0.03 0.69 7.57 -51.92 -0.39 0.29 16 26 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 27 H 0.07 1.09 8.00 -51.92 -0.42 0.68 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.03 7.42 -51.93 -0.39 0.65 16 30 H 0.08 0.81 7.67 -51.93 -0.40 0.41 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 279.43 15.07 4.21 4.21 Total: -1.00 -29.90 279.43 -7.96 -37.86 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -4.09 Total: -2.73 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: -1.97 Total: -17.92 kcal Atomic # 7 Polarization: -26.89 SS G_CDS: 0.77 Total: -26.12 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.08 Total: -3.83 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 16 Polarization: -5.43 SS G_CDS: -2.30 Total: -7.73 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.90 -7.96 -37.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917847105.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.386 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds