Wall clock time and date at job start Mon Mar 30 2020 05:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00050 * 2 1 4 4 H 1.48499 * 109.47551 * 270.00521 * 3 2 1 5 5 H 1.48502 * 109.47242 * 30.00727 * 3 2 1 6 6 H 1.48498 * 109.47102 * 150.00491 * 3 2 1 7 7 C 1.37876 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00212 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00082 * 179.97438 * 7 2 1 10 10 S 1.81401 * 109.47534 * 180.02562 * 9 7 2 11 11 C 1.81398 * 103.00140 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.46953 * 180.02562 * 11 10 9 13 13 H 1.09000 * 110.67311 * 308.23058 * 12 11 10 14 14 C 1.54889 * 110.91804 * 71.57935 * 12 11 10 15 15 C 1.54268 * 104.19728 * 156.33023 * 14 12 11 16 16 H 1.08998 * 117.41067 * 116.36929 * 15 14 12 17 17 C 1.53873 * 106.59675 * 336.38656 * 15 14 12 18 18 H 1.09005 * 121.32922 * 138.06223 * 17 15 14 19 19 C 1.54264 * 106.60152 * 0.02562 * 17 15 14 20 20 C 1.52992 * 118.19726 * 270.99841 * 15 14 12 21 21 F 1.39896 * 117.46235 * 201.21477 * 20 15 14 22 22 F 1.39907 * 117.46247 * 346.01594 * 20 15 14 23 23 H 0.97001 * 120.00216 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46962 * 59.99922 * 9 7 2 25 25 H 1.09000 * 109.47095 * 300.00422 * 9 7 2 26 26 H 1.08999 * 109.47412 * 59.99774 * 11 10 9 27 27 H 1.09000 * 109.47075 * 300.00008 * 11 10 9 28 28 H 1.08998 * 110.48466 * 275.00921 * 14 12 11 29 29 H 1.08999 * 110.48474 * 37.64966 * 14 12 11 30 30 H 1.08998 * 110.49036 * 264.93341 * 19 17 15 31 31 H 1.09000 * 110.49063 * 142.28381 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4401 0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 -0.0011 10 16 4.1161 -2.9044 -0.0025 11 6 5.9186 -2.7000 -0.0023 12 6 6.5878 -4.0758 -0.0040 13 1 6.1887 -4.6989 0.7963 14 6 6.4186 -4.7714 -1.3776 15 6 7.5882 -5.7754 -1.4399 16 1 7.3378 -6.8354 -1.4809 17 6 8.6734 -5.2457 -0.4863 18 1 9.2226 -5.9157 0.1753 19 6 8.1253 -3.9387 0.1228 20 6 8.9208 -5.2978 -2.0202 21 9 9.8055 -6.2732 -2.4922 22 9 8.9207 -4.0910 -2.7282 23 1 -0.4850 0.8400 0.0004 24 1 3.8751 -0.6805 0.8888 25 1 3.8745 -0.6801 -0.8911 26 1 6.2217 -2.1492 0.8881 27 1 6.2217 -2.1477 -0.8918 28 1 5.4636 -5.2947 -1.4251 29 1 6.4967 -4.0440 -2.1856 30 1 8.4786 -3.0766 -0.4429 31 1 8.4160 -3.8544 1.1699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917847105.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:56:33 Heat of formation + Delta-G solvation = -100.305263 kcal Electronic energy + Delta-G solvation = -15534.891157 eV Core-core repulsion = 12577.947743 eV Total energy + Delta-G solvation = -2956.943414 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.074 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.66231 -48.37479 -40.09962 -35.20283 -34.00696 -31.44694 -29.44932 -27.92406 -24.66550 -22.80780 -21.21970 -21.17747 -19.08529 -18.78979 -17.94259 -17.07850 -16.89936 -16.36644 -16.04541 -15.38141 -15.18239 -15.02393 -14.72155 -14.58146 -14.35114 -14.21805 -13.78877 -13.49223 -13.01037 -12.66733 -12.43963 -12.30133 -12.15932 -11.92732 -11.78096 -11.56057 -11.16684 -10.89420 -10.72894 -10.61741 -8.45723 -8.37662 -6.47171 0.97043 1.33674 1.35317 1.45874 1.90361 2.02417 2.06551 2.28866 2.95446 3.16736 3.18377 3.59674 3.88048 3.97772 4.06613 4.19485 4.32249 4.47034 4.59402 4.62500 4.71483 4.74767 4.76900 4.89119 4.99204 5.04804 5.17289 5.34172 5.37706 6.07055 6.57128 7.15482 8.78341 Molecular weight = 248.07amu Principal moments of inertia in cm(-1) A = 0.049116 B = 0.004328 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.945500 B = 6468.448200 C = 6620.185630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.019 3.981 3 Si 0.954 3.046 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.245 1.245 7 C -0.530 4.530 8 H 0.036 0.964 9 C 0.047 3.953 10 S -0.301 6.301 11 C -0.074 4.074 12 C -0.064 4.064 13 H 0.096 0.904 14 C -0.095 4.095 15 C -0.152 4.152 16 H 0.152 0.848 17 C -0.132 4.132 18 H 0.165 0.835 19 C -0.087 4.087 20 C 0.183 3.817 21 F -0.167 7.167 22 F -0.174 7.174 23 H 0.272 0.728 24 H 0.041 0.959 25 H 0.036 0.964 26 H 0.090 0.910 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.176 -9.005 -0.046 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.181 4.181 3 Si 0.776 3.224 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.169 1.169 7 C -0.568 4.568 8 H 0.054 0.946 9 C -0.101 4.101 10 S -0.074 6.074 11 C -0.223 4.223 12 C -0.083 4.083 13 H 0.114 0.886 14 C -0.133 4.133 15 C -0.171 4.171 16 H 0.170 0.830 17 C -0.150 4.150 18 H 0.182 0.818 19 C -0.126 4.126 20 C 0.147 3.853 21 F -0.148 7.148 22 F -0.154 7.154 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.109 0.891 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.095 0.905 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 20.437 -9.818 -0.080 22.673 hybrid contribution 0.387 1.809 -0.541 1.928 sum 20.824 -8.009 -0.621 22.320 Atomic orbital electron populations 1.70021 1.08288 1.28734 1.50939 1.25905 0.95659 1.03218 0.93335 0.85616 0.79476 0.77828 0.79518 1.18815 1.20195 1.16862 1.20712 0.89614 0.93793 1.52701 0.94591 1.21191 0.98124 0.91400 0.99371 1.86715 1.06125 1.16541 1.98020 1.23414 0.92319 1.01362 1.05173 1.21981 0.94825 0.93442 0.98099 0.88574 1.22061 0.96898 0.96926 0.97394 1.24661 0.89446 1.02857 1.00099 0.83040 1.25114 1.00056 1.01399 0.88478 0.81804 1.22089 0.92295 0.95209 1.03014 1.21023 0.95041 0.76721 0.92565 1.92988 1.70279 1.61396 1.90123 1.92966 1.96846 1.44922 1.80714 0.91859 0.94059 0.94526 0.89110 0.90346 0.89957 0.91440 0.90541 0.87241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.31 13.96 21.45 0.30 -58.01 16 2 C 0.02 1.08 5.47 84.65 0.46 1.54 16 3 Si 0.95 42.69 27.47 68.60 1.88 44.58 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.25 -10.04 6.54 99.48 0.65 -9.39 16 7 C -0.53 -30.94 9.68 25.60 0.25 -30.69 16 8 H 0.04 2.37 7.96 -2.91 -0.02 2.35 16 9 C 0.05 2.23 4.77 71.24 0.34 2.57 16 10 S -0.30 -12.03 21.38 -56.49 -1.21 -13.24 16 11 C -0.07 -2.03 5.42 71.98 0.39 -1.64 16 12 C -0.06 -1.33 2.86 -9.51 -0.03 -1.36 16 13 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 14 C -0.10 -2.06 5.68 31.67 0.18 -1.88 16 15 C -0.15 -2.60 6.84 -10.07 -0.07 -2.67 16 16 H 0.15 2.04 8.14 -2.39 -0.02 2.02 16 17 C -0.13 -1.89 7.02 -9.22 -0.06 -1.95 16 18 H 0.16 1.47 8.14 -2.38 -0.02 1.45 16 19 C -0.09 -1.33 5.99 31.66 0.19 -1.14 16 20 C 0.18 3.65 5.22 31.44 0.16 3.82 16 21 F -0.17 -3.58 17.60 44.97 0.79 -2.79 16 22 F -0.17 -4.26 16.34 44.97 0.73 -3.53 16 23 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 24 H 0.04 1.87 7.20 -2.39 -0.02 1.86 16 25 H 0.04 1.66 7.57 -2.39 -0.02 1.64 16 26 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.08 2.11 8.00 -2.39 -0.02 2.09 16 28 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.07 1.66 7.42 -2.39 -0.02 1.64 16 30 H 0.08 1.29 7.67 -2.39 -0.02 1.27 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -66.76 279.43 5.38 -61.38 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.06 Total: 5.02 kcal Atomic # 6 Polarization: -35.21 SS G_CDS: 1.81 Total: -33.40 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.30 Total: -58.01 kcal Atomic # 9 Polarization: -7.85 SS G_CDS: 1.53 Total: -6.32 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.58 kcal Atomic # 16 Polarization: -12.03 SS G_CDS: -1.21 Total: -13.24 kcal Total: -66.76 5.38 -61.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917847105.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.927 kcal (2) G-P(sol) polarization free energy of solvation -66.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds