Wall clock time and date at job start Mon Mar 30 2020 06:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46784 * 2 1 4 4 P 1.60997 * 122.99650 * 180.63094 * 3 2 1 5 5 O 1.48000 * 109.47543 * 54.82592 * 4 3 2 6 6 C 1.82299 * 109.46980 * 174.82609 * 4 3 2 7 7 C 1.50698 * 109.47079 * 294.99862 * 6 4 3 8 8 H 1.08003 * 119.99991 * 359.97438 * 7 6 4 9 9 C 1.37882 * 120.00125 * 179.97438 * 7 6 4 10 10 N 1.31519 * 119.99786 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00194 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47169 * 59.99643 * 11 9 7 13 13 H 1.48498 * 109.47254 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47136 * 299.99972 * 11 9 7 15 15 C 1.82301 * 109.47182 * 294.82280 * 4 3 2 16 16 H 1.09001 * 110.55067 * 62.36646 * 15 4 3 17 17 C 1.54992 * 110.75427 * 299.39600 * 15 4 3 18 18 C 1.54809 * 102.09489 * 204.40785 * 17 15 4 19 19 C 1.54103 * 104.18824 * 20.88009 * 18 17 15 20 20 O 1.43751 * 107.28994 * 2.03038 * 19 18 17 21 21 H 1.08998 * 109.46844 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47292 * 300.00275 * 1 2 3 23 23 H 1.09002 * 109.46974 * 59.99981 * 1 2 3 24 24 H 1.08994 * 109.47212 * 240.00271 * 2 1 3 25 25 H 1.08994 * 109.47025 * 119.99713 * 2 1 3 26 26 H 1.09003 * 109.47131 * 55.00178 * 6 4 3 27 27 H 1.09004 * 109.47415 * 174.99523 * 6 4 3 28 28 H 0.97000 * 119.99628 * 179.97438 * 10 9 7 29 29 H 1.08999 * 110.90776 * 322.60623 * 17 15 4 30 30 H 1.08998 * 110.91013 * 86.21134 * 17 15 4 31 31 H 1.08997 * 110.49038 * 262.20294 * 18 17 15 32 32 H 1.09001 * 110.48833 * 139.55230 * 18 17 15 33 33 H 1.08997 * 109.87843 * 242.60929 * 19 18 17 34 34 H 1.08994 * 110.00716 * 121.51769 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 15 3.5715 1.7240 -0.0149 5 8 4.2274 1.0622 -1.1647 6 6 3.7602 3.5310 -0.1652 7 6 3.2289 3.9821 -1.5013 8 1 2.8196 3.2593 -2.1916 9 6 3.2653 5.3175 -1.8425 10 7 3.7642 6.1976 -1.0021 11 14 2.6074 5.8766 -3.4989 12 1 1.1706 5.5176 -3.6076 13 1 2.7599 7.3487 -3.6209 14 1 3.3682 5.2080 -4.5850 15 6 4.3473 1.1589 1.5350 16 1 4.2812 0.0745 1.6228 17 6 3.6919 1.8465 2.7598 18 6 4.8190 1.7672 3.8180 19 6 6.1027 1.5699 2.9885 20 8 5.7231 1.5915 1.6022 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.2026 4.0221 0.6323 27 1 4.8151 3.7940 -0.0860 28 1 3.7902 7.1370 -1.2423 29 1 3.4410 2.8833 2.5357 30 1 2.8101 1.2968 3.0888 31 1 4.6597 0.9178 4.4822 32 1 4.8724 2.6943 4.3888 33 1 6.5582 0.6104 3.2331 34 1 6.8063 2.3769 3.1926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034062069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:24 Heat of formation + Delta-G solvation = -170.867651 kcal Electronic energy + Delta-G solvation = -16767.238289 eV Core-core repulsion = 13971.564553 eV Total energy + Delta-G solvation = -2795.673736 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.94672 -36.79001 -32.99219 -32.13628 -31.91215 -30.80967 -29.05833 -28.07821 -23.12076 -22.84243 -22.51732 -21.42470 -17.96875 -16.85380 -16.35227 -16.06325 -15.42122 -15.11627 -14.63093 -14.27061 -13.82815 -13.47224 -13.05429 -12.39668 -12.28034 -12.17387 -11.90014 -11.78216 -11.76789 -11.47598 -11.11917 -10.93988 -10.85658 -10.70832 -10.61515 -10.09865 -9.89392 -9.66957 -9.49998 -9.09856 -8.48389 -8.44377 -6.07336 -4.12187 2.12796 3.36613 3.38749 3.44764 3.84416 4.37245 4.45824 4.51598 4.74986 4.89170 5.02600 5.12793 5.26264 5.28652 5.29522 5.49225 5.50125 5.58216 5.72044 5.75083 5.81428 5.96529 6.06496 6.18513 6.31729 6.75475 6.87921 7.06174 7.44833 7.82157 8.10819 8.40907 8.94596 9.52322 11.06064 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.008900 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.897581 B = 3145.188614 C = 4050.328902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 O -0.719 6.719 4 P 2.410 2.590 5 O -1.003 7.003 6 C -0.550 4.550 7 C -0.512 4.512 8 H 0.073 0.927 9 C 0.060 3.940 10 N -0.893 5.893 11 Si 0.899 3.101 12 H -0.272 1.272 13 H -0.287 1.287 14 H -0.269 1.269 15 C -0.537 4.537 16 H 0.090 0.910 17 C -0.155 4.155 18 C -0.150 4.150 19 C 0.040 3.960 20 O -0.332 6.332 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.262 0.738 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.256 -11.852 9.055 15.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.028 3.972 3 O -0.741 6.741 4 P 2.549 2.451 5 O -1.106 7.106 6 C -0.574 4.574 7 C -0.549 4.549 8 H 0.091 0.909 9 C -0.142 4.142 10 N -0.531 5.531 11 Si 0.726 3.274 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.194 1.194 15 C -0.586 4.586 16 H 0.108 0.892 17 C -0.192 4.192 18 C -0.187 4.187 19 C -0.037 4.037 20 O -0.251 6.251 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.090 0.910 24 H 0.092 0.908 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.074 0.926 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.813 -10.864 9.596 14.988 hybrid contribution 0.095 0.785 0.531 0.952 sum -3.718 -10.079 10.127 14.764 Atomic orbital electron populations 1.21881 0.93955 1.01809 1.03812 1.22137 0.96329 0.78044 1.00729 1.88198 1.55148 1.35621 1.95090 0.92750 0.47153 0.54503 0.50658 1.94993 1.78896 1.80586 1.56084 1.28730 1.04657 1.20216 1.03749 1.20547 1.41160 0.93747 0.99465 0.90884 1.25045 0.94858 0.96730 0.97564 1.69988 1.45029 1.02141 1.35973 0.86523 0.79768 0.77309 0.83835 1.19683 1.21246 1.19380 1.35162 0.91577 1.06799 1.25051 0.89204 1.23144 0.98869 1.02192 0.95037 1.22891 0.94631 1.02791 0.98417 1.23254 0.96881 1.01381 0.82196 1.88960 1.24215 1.87566 1.24337 0.91322 0.91899 0.90968 0.90824 0.93562 0.93981 0.91299 0.92852 0.89408 0.89589 0.90845 0.90182 0.92598 0.89519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 10.28 37.16 0.38 -1.29 16 2 C 0.10 1.31 7.17 37.16 0.27 1.58 16 3 O -0.72 -12.55 10.19 -2.91 -0.03 -12.58 16 4 P 2.41 50.02 4.25 -42.89 -0.18 49.84 16 5 O -1.00 -24.68 18.53 0.05 0.00 -24.68 16 6 C -0.55 -14.66 5.74 36.00 0.21 -14.46 16 7 C -0.51 -15.18 9.10 -34.44 -0.31 -15.50 16 8 H 0.07 2.09 7.72 -52.48 -0.40 1.68 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -27.84 13.29 55.43 0.74 -27.10 16 11 Si 0.90 22.48 29.54 -169.99 -5.02 17.45 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 15 C -0.54 -9.31 4.23 38.21 0.16 -9.15 16 16 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 17 C -0.15 -2.28 6.61 -24.73 -0.16 -2.45 16 18 C -0.15 -1.94 7.01 -25.20 -0.18 -2.11 16 19 C 0.04 0.59 7.70 37.73 0.29 0.88 16 20 O -0.33 -6.50 11.27 -35.23 -0.40 -6.90 16 21 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.04 1.12 7.58 -51.93 -0.39 0.73 16 27 H 0.07 2.02 8.14 -51.93 -0.42 1.59 16 28 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 29 H 0.09 1.39 7.19 -51.93 -0.37 1.01 16 30 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 300.20 15.07 4.52 4.52 Total: -1.00 -36.94 300.20 -5.19 -42.13 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.38 Total: -1.90 kcal Atomic # 6 Polarization: -41.34 SS G_CDS: 0.56 Total: -40.79 kcal Atomic # 7 Polarization: -27.84 SS G_CDS: 0.74 Total: -27.10 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.43 Total: -44.16 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Atomic # 15 Polarization: 50.02 SS G_CDS: -0.18 Total: 49.84 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -36.94 -5.19 -42.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034062069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.737 kcal (2) G-P(sol) polarization free energy of solvation -36.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds