Wall clock time and date at job start Mon Mar 30 2020 06:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46784 * 2 1 4 4 P 1.60997 * 122.99650 * 180.63094 * 3 2 1 5 5 O 1.48000 * 109.47543 * 54.82592 * 4 3 2 6 6 C 1.82299 * 109.46980 * 174.82609 * 4 3 2 7 7 C 1.50698 * 109.47079 * 294.99862 * 6 4 3 8 8 H 1.08003 * 119.99991 * 359.97438 * 7 6 4 9 9 C 1.37882 * 120.00125 * 179.97438 * 7 6 4 10 10 N 1.31519 * 119.99786 * 0.02562 * 9 7 6 11 11 Si 1.86792 * 120.00194 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47169 * 59.99643 * 11 9 7 13 13 H 1.48498 * 109.47254 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47136 * 299.99972 * 11 9 7 15 15 C 1.82301 * 109.47182 * 294.82280 * 4 3 2 16 16 H 1.09001 * 110.55067 * 62.36646 * 15 4 3 17 17 C 1.54992 * 110.75427 * 299.39600 * 15 4 3 18 18 C 1.54809 * 102.09489 * 204.40785 * 17 15 4 19 19 C 1.54103 * 104.18824 * 20.88009 * 18 17 15 20 20 O 1.43751 * 107.28994 * 2.03038 * 19 18 17 21 21 H 1.08998 * 109.46844 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47292 * 300.00275 * 1 2 3 23 23 H 1.09002 * 109.46974 * 59.99981 * 1 2 3 24 24 H 1.08994 * 109.47212 * 240.00271 * 2 1 3 25 25 H 1.08994 * 109.47025 * 119.99713 * 2 1 3 26 26 H 1.09003 * 109.47131 * 55.00178 * 6 4 3 27 27 H 1.09004 * 109.47415 * 174.99523 * 6 4 3 28 28 H 0.97000 * 119.99628 * 179.97438 * 10 9 7 29 29 H 1.08999 * 110.90776 * 322.60623 * 17 15 4 30 30 H 1.08998 * 110.91013 * 86.21134 * 17 15 4 31 31 H 1.08997 * 110.49038 * 262.20294 * 18 17 15 32 32 H 1.09001 * 110.48833 * 139.55230 * 18 17 15 33 33 H 1.08997 * 109.87843 * 242.60929 * 19 18 17 34 34 H 1.08994 * 110.00716 * 121.51769 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 15 3.5715 1.7240 -0.0149 5 8 4.2274 1.0622 -1.1647 6 6 3.7602 3.5310 -0.1652 7 6 3.2289 3.9821 -1.5013 8 1 2.8196 3.2593 -2.1916 9 6 3.2653 5.3175 -1.8425 10 7 3.7642 6.1976 -1.0021 11 14 2.6074 5.8766 -3.4989 12 1 1.1706 5.5176 -3.6076 13 1 2.7599 7.3487 -3.6209 14 1 3.3682 5.2080 -4.5850 15 6 4.3473 1.1589 1.5350 16 1 4.2812 0.0745 1.6228 17 6 3.6919 1.8465 2.7598 18 6 4.8190 1.7672 3.8180 19 6 6.1027 1.5699 2.9885 20 8 5.7231 1.5915 1.6022 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.2026 4.0221 0.6323 27 1 4.8151 3.7940 -0.0860 28 1 3.7902 7.1370 -1.2423 29 1 3.4410 2.8833 2.5357 30 1 2.8101 1.2968 3.0888 31 1 4.6597 0.9178 4.4822 32 1 4.8724 2.6943 4.3888 33 1 6.5582 0.6104 3.2331 34 1 6.8063 2.3769 3.1926 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034062069.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:23 Heat of formation + Delta-G solvation = -197.762919 kcal Electronic energy + Delta-G solvation = -16768.404556 eV Core-core repulsion = 13971.564553 eV Total energy + Delta-G solvation = -2796.840002 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.20622 -38.07799 -35.22178 -33.77604 -33.30488 -31.82502 -30.55733 -29.97618 -25.14831 -24.00605 -23.75238 -22.55343 -19.31681 -18.77185 -17.79008 -17.48604 -16.71370 -16.54719 -16.34535 -15.54460 -15.15523 -14.88186 -14.60167 -14.25034 -14.02571 -13.62693 -13.23532 -13.02917 -12.94907 -12.69115 -12.67365 -12.56851 -12.40145 -12.13577 -11.96983 -11.75766 -11.66382 -11.22592 -11.05465 -10.79537 -10.71511 -10.32403 -8.34166 -6.47568 0.59736 1.34797 1.41539 1.48913 2.34764 2.58538 2.98949 3.18798 3.31959 3.60350 3.79199 3.91267 4.15836 4.23203 4.34190 4.40073 4.52286 4.59506 4.61565 4.64215 4.71511 4.76742 4.90192 4.94635 5.10975 5.21805 5.47414 5.52535 5.55078 5.86198 6.05980 6.69876 6.84178 7.22089 8.80347 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.019294 B = 0.008900 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.897581 B = 3145.188614 C = 4050.328902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.075 3.925 3 O -0.732 6.732 4 P 2.491 2.509 5 O -1.059 7.059 6 C -0.567 4.567 7 C -0.539 4.539 8 H 0.077 0.923 9 C -0.004 4.004 10 N -0.933 5.933 11 Si 0.965 3.035 12 H -0.251 1.251 13 H -0.277 1.277 14 H -0.262 1.262 15 C -0.557 4.557 16 H 0.122 0.878 17 C -0.162 4.162 18 C -0.145 4.145 19 C 0.024 3.976 20 O -0.376 6.376 21 H 0.103 0.897 22 H 0.068 0.932 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.265 0.735 29 H 0.066 0.934 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.793 -13.604 9.841 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.003 3.997 3 O -0.757 6.757 4 P 2.629 2.371 5 O -1.157 7.157 6 C -0.592 4.592 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.202 4.202 10 N -0.572 5.572 11 Si 0.787 3.213 12 H -0.175 1.175 13 H -0.202 1.202 14 H -0.187 1.187 15 C -0.605 4.605 16 H 0.139 0.861 17 C -0.200 4.200 18 C -0.182 4.182 19 C -0.052 4.052 20 O -0.296 6.296 21 H 0.122 0.878 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.094 0.906 25 H 0.104 0.896 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.125 0.875 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.323 -12.656 10.375 17.209 hybrid contribution 0.558 1.295 0.385 1.461 sum -4.765 -11.362 10.760 16.357 Atomic orbital electron populations 1.21953 0.92078 1.03986 1.03453 1.22805 0.98098 0.75837 1.02939 1.88149 1.53603 1.38739 1.95232 0.89668 0.46929 0.50327 0.50221 1.94956 1.80591 1.81009 1.59137 1.28987 1.01713 1.26198 1.02304 1.21061 1.41241 0.94379 1.00903 0.90523 1.26146 0.95076 0.96964 1.01983 1.70122 1.46316 1.02545 1.38225 0.85496 0.80146 0.77215 0.78470 1.17454 1.20249 1.18696 1.35103 0.91295 1.08939 1.25170 0.86051 1.23277 1.00911 1.01253 0.94510 1.22945 0.92476 1.04781 0.98017 1.23593 0.98278 1.02822 0.80519 1.88920 1.25205 1.88103 1.27339 0.87823 0.91327 0.92348 0.90595 0.89612 0.95035 0.95208 0.92612 0.91547 0.85721 0.87497 0.89342 0.90405 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.28 71.98 0.74 -2.16 16 2 C 0.08 1.76 7.17 71.98 0.52 2.27 16 3 O -0.73 -24.77 10.19 -26.22 -0.27 -25.04 16 4 P 2.49 104.12 4.25 -40.88 -0.17 103.95 16 5 O -1.06 -52.96 18.53 -20.59 -0.38 -53.34 16 6 C -0.57 -31.67 5.74 71.24 0.41 -31.26 16 7 C -0.54 -32.94 9.10 25.60 0.23 -32.71 16 8 H 0.08 4.48 7.72 -2.91 -0.02 4.45 16 9 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 10 N -0.93 -60.03 13.29 21.45 0.28 -59.74 16 11 Si 0.96 46.38 29.54 68.60 2.03 48.41 16 12 H -0.25 -11.12 7.11 99.48 0.71 -10.42 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 15 C -0.56 -18.64 4.23 72.66 0.31 -18.33 16 16 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 17 C -0.16 -4.45 6.61 31.89 0.21 -4.24 16 18 C -0.14 -3.36 7.01 31.58 0.22 -3.14 16 19 C 0.02 0.68 7.70 72.36 0.56 1.24 16 20 O -0.38 -14.76 11.27 -148.98 -1.68 -16.43 16 21 H 0.10 1.18 8.14 -2.39 -0.02 1.17 16 22 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.03 1.77 7.58 -2.39 -0.02 1.75 16 27 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 29 H 0.07 2.09 7.19 -2.39 -0.02 2.07 16 30 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.09 2.39 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -83.57 300.20 4.53 -79.04 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.06 Total: 11.24 kcal Atomic # 6 Polarization: -91.74 SS G_CDS: 3.66 Total: -88.09 kcal Atomic # 7 Polarization: -60.03 SS G_CDS: 0.28 Total: -59.74 kcal Atomic # 8 Polarization: -92.48 SS G_CDS: -2.33 Total: -94.81 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Atomic # 15 Polarization: 104.12 SS G_CDS: -0.17 Total: 103.95 kcal Total: -83.57 4.53 -79.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034062069.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.718 kcal (2) G-P(sol) polarization free energy of solvation -83.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds