Wall clock time and date at job start Mon Mar 30 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42897 * 109.47562 * 2 1 4 4 P 1.60998 * 123.00386 * 180.02562 * 3 2 1 5 5 O 1.48008 * 109.47016 * 304.99986 * 4 3 2 6 6 C 1.82296 * 109.47310 * 185.00138 * 4 3 2 7 7 C 1.50706 * 109.47392 * 64.99766 * 6 4 3 8 8 H 1.08005 * 119.99758 * 0.02562 * 7 6 4 9 9 C 1.37871 * 120.00102 * 180.02562 * 7 6 4 10 10 N 1.31516 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99766 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47057 * 179.97438 * 11 9 7 13 13 H 1.48500 * 109.47389 * 300.00068 * 11 9 7 14 14 H 1.48504 * 109.47102 * 60.00417 * 11 9 7 15 15 C 1.82299 * 109.47149 * 64.99930 * 4 3 2 16 16 H 1.08998 * 110.54795 * 60.70356 * 15 4 3 17 17 C 1.54998 * 110.61697 * 297.82306 * 15 4 3 18 18 C 1.54990 * 102.00915 * 204.59488 * 17 15 4 19 19 C 1.54100 * 104.25234 * 20.67054 * 18 17 15 20 20 O 1.43737 * 107.29554 * 2.16371 * 19 18 17 21 21 H 1.08997 * 109.47028 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.46919 * 300.00502 * 1 2 3 23 23 H 1.09005 * 109.46672 * 59.99807 * 1 2 3 24 24 H 1.09003 * 109.47096 * 240.00127 * 2 1 3 25 25 H 1.08995 * 109.47185 * 120.00182 * 2 1 3 26 26 H 1.09001 * 109.47487 * 305.00061 * 6 4 3 27 27 H 1.09006 * 109.47437 * 184.99807 * 6 4 3 28 28 H 0.97001 * 119.99646 * 359.97438 * 10 9 7 29 29 H 1.08999 * 110.90576 * 322.67297 * 17 15 4 30 30 H 1.08993 * 110.90317 * 86.27729 * 17 15 4 31 31 H 1.09000 * 110.34069 * 262.02698 * 18 17 15 32 32 H 1.09002 * 110.56839 * 139.42169 * 18 17 15 33 33 H 1.09005 * 109.87372 * 242.73923 * 19 18 17 34 34 H 1.08998 * 110.00464 * 121.66034 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 15 3.5717 1.7238 -0.0006 5 8 4.2391 1.0609 1.1421 6 6 3.7621 3.5306 0.1494 7 6 3.2443 3.9807 1.4913 8 1 2.8419 3.2573 2.1850 9 6 3.2843 5.3157 1.8331 10 7 3.7739 6.1966 0.9881 11 14 2.6417 5.8736 3.4961 12 1 2.7970 7.3454 3.6183 13 1 1.2058 5.5150 3.6177 14 1 3.4123 5.2039 4.5745 15 6 4.3318 1.1600 -1.5587 16 1 3.8611 1.6475 -2.4124 17 6 4.2332 -0.3815 -1.6876 18 6 5.4154 -0.7020 -2.6372 19 6 6.3416 0.5237 -2.5171 20 8 5.7538 1.4104 -1.5505 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 3.1965 4.0226 -0.6419 27 1 4.8162 3.7936 0.0599 28 1 4.1072 5.9069 0.1245 29 1 4.3721 -0.8624 -0.7193 30 1 3.2826 -0.6744 -2.1331 31 1 5.0594 -0.8123 -3.6615 32 1 5.9331 -1.6047 -2.3129 33 1 6.4191 1.0255 -3.4816 34 1 7.3306 0.2122 -2.1810 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034062070.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:26 Heat of formation + Delta-G solvation = -202.048138 kcal Electronic energy + Delta-G solvation = -16774.432582 eV Core-core repulsion = 13977.406759 eV Total energy + Delta-G solvation = -2797.025823 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.23195 -38.17405 -35.62070 -33.82271 -33.29558 -31.88050 -30.29042 -29.83184 -25.31453 -24.03461 -23.80748 -22.51853 -19.52859 -19.07677 -17.94895 -17.51936 -16.56268 -16.43725 -15.93602 -15.74347 -15.60473 -14.90992 -14.77978 -14.42345 -14.05447 -13.80173 -13.26716 -13.07639 -12.99395 -12.59844 -12.56839 -12.53137 -12.33129 -12.02336 -11.91536 -11.80734 -11.24651 -11.16571 -11.11515 -10.83990 -10.71371 -10.44360 -8.88602 -6.59543 0.48942 1.47262 1.58582 1.77810 2.48519 2.52352 2.97860 3.13194 3.34674 3.59694 3.79245 3.88582 4.04489 4.24161 4.27712 4.33918 4.43461 4.51358 4.52341 4.55799 4.61739 4.69784 4.76485 4.99393 5.04183 5.17084 5.44497 5.50735 5.55214 5.93873 6.02332 6.32064 6.77194 7.27426 8.53730 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.023172 B = 0.008108 C = 0.006470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.051915 B = 3452.619241 C = 4326.771586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.073 3.927 3 O -0.737 6.737 4 P 2.506 2.494 5 O -1.050 7.050 6 C -0.595 4.595 7 C -0.609 4.609 8 H 0.073 0.927 9 C -0.044 4.044 10 N -0.933 5.933 11 Si 1.114 2.886 12 H -0.279 1.279 13 H -0.251 1.251 14 H -0.262 1.262 15 C -0.568 4.568 16 H 0.094 0.906 17 C -0.153 4.153 18 C -0.142 4.142 19 C 0.022 3.978 20 O -0.378 6.378 21 H 0.107 0.893 22 H 0.058 0.942 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.024 0.976 27 H 0.026 0.974 28 H 0.249 0.751 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.119 -18.012 -7.833 20.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.001 3.999 3 O -0.762 6.762 4 P 2.644 2.356 5 O -1.149 7.149 6 C -0.620 4.620 7 C -0.646 4.646 8 H 0.091 0.909 9 C -0.240 4.240 10 N -0.570 5.570 11 Si 0.931 3.069 12 H -0.204 1.204 13 H -0.175 1.175 14 H -0.187 1.187 15 C -0.616 4.616 16 H 0.112 0.888 17 C -0.190 4.190 18 C -0.179 4.179 19 C -0.054 4.054 20 O -0.298 6.298 21 H 0.125 0.875 22 H 0.077 0.923 23 H 0.084 0.916 24 H 0.104 0.896 25 H 0.098 0.902 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.058 0.942 29 H 0.115 0.885 30 H 0.141 0.859 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.081 0.919 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.937 -15.849 -7.461 18.200 hybrid contribution 1.079 -0.196 -2.436 2.671 sum -3.858 -16.045 -9.897 19.242 Atomic orbital electron populations 1.21974 0.92096 1.04162 1.03371 1.22932 0.98074 0.75686 1.03161 1.88137 1.53754 1.39075 1.95198 0.88973 0.46922 0.49409 0.50255 1.94957 1.80139 1.80596 1.59241 1.29280 1.01079 1.28869 1.02803 1.21912 1.44936 0.97035 1.00675 0.90850 1.27825 0.94286 0.93866 1.08056 1.70941 1.39818 1.37315 1.08928 0.83073 0.77906 0.76082 0.69815 1.20402 1.17529 1.18719 1.35063 0.91778 1.06978 1.27775 0.88785 1.23362 1.02379 0.89985 1.03299 1.22961 0.95172 0.98688 1.01066 1.23609 0.98804 0.90637 0.92329 1.88902 1.16579 1.62308 1.61976 0.87495 0.92306 0.91587 0.89552 0.90174 0.95799 0.95623 0.94187 0.88482 0.85919 0.88430 0.87716 0.91897 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 10.28 71.98 0.74 -2.16 16 2 C 0.07 1.69 6.85 71.98 0.49 2.18 16 3 O -0.74 -25.19 10.19 -26.22 -0.27 -25.45 16 4 P 2.51 104.86 4.28 -40.88 -0.17 104.68 16 5 O -1.05 -51.49 18.39 -20.59 -0.38 -51.87 16 6 C -0.60 -33.64 5.35 71.24 0.38 -33.26 16 7 C -0.61 -37.83 9.10 25.60 0.23 -37.59 16 8 H 0.07 4.36 7.72 -2.91 -0.02 4.33 16 9 C -0.04 -2.74 5.46 84.65 0.46 -2.28 16 10 N -0.93 -62.58 13.65 21.45 0.29 -62.29 16 11 Si 1.11 53.00 29.90 68.60 2.05 55.06 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 13 H -0.25 -10.62 7.11 99.48 0.71 -9.91 16 14 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 15 C -0.57 -19.11 4.23 72.67 0.31 -18.81 16 16 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 17 C -0.15 -3.63 5.41 31.96 0.17 -3.46 16 18 C -0.14 -2.85 7.02 31.65 0.22 -2.63 16 19 C 0.02 0.61 7.70 72.35 0.56 1.16 16 20 O -0.38 -14.75 11.27 -148.98 -1.68 -16.43 16 21 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 24 H 0.09 1.32 5.60 -2.39 -0.01 1.31 16 25 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.02 1.35 8.01 -2.39 -0.02 1.33 16 27 H 0.03 1.61 8.01 -2.38 -0.02 1.59 16 28 H 0.25 17.06 7.22 -92.71 -0.67 16.39 16 29 H 0.10 2.34 7.92 -2.39 -0.02 2.33 16 30 H 0.12 1.88 6.70 -2.39 -0.02 1.87 16 31 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -86.73 294.86 4.58 -82.15 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 1.17 Total: 11.00 kcal Atomic # 6 Polarization: -100.42 SS G_CDS: 3.57 Total: -96.85 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.29 Total: -62.29 kcal Atomic # 8 Polarization: -91.43 SS G_CDS: -2.33 Total: -93.75 kcal Atomic # 14 Polarization: 53.00 SS G_CDS: 2.05 Total: 55.06 kcal Atomic # 15 Polarization: 104.86 SS G_CDS: -0.17 Total: 104.68 kcal Total: -86.73 4.58 -82.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034062070.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.899 kcal (2) G-P(sol) polarization free energy of solvation -86.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds