Wall clock time and date at job start Mon Mar 30 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47263 * 2 1 4 4 P 1.60998 * 123.00128 * 180.02562 * 3 2 1 5 5 O 1.48002 * 109.47106 * 304.99895 * 4 3 2 6 6 C 1.82298 * 109.47003 * 64.99925 * 4 3 2 7 7 C 1.50699 * 109.47332 * 294.99913 * 6 4 3 8 8 H 1.08002 * 120.00167 * 0.02562 * 7 6 4 9 9 C 1.37884 * 120.00055 * 179.97438 * 7 6 4 10 10 N 1.31510 * 119.99556 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99818 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47175 * 90.00110 * 11 9 7 13 13 H 1.48503 * 109.46912 * 209.99916 * 11 9 7 14 14 H 1.48501 * 109.47339 * 329.99514 * 11 9 7 15 15 C 1.82298 * 109.47088 * 184.99922 * 4 3 2 16 16 H 1.08999 * 110.42100 * 297.68747 * 15 4 3 17 17 C 1.54477 * 110.37086 * 60.00089 * 15 4 3 18 18 C 1.54507 * 104.06510 * 142.80886 * 17 15 4 19 19 C 1.54483 * 104.06211 * 359.97438 * 18 17 15 20 20 O 1.44428 * 104.89902 * 335.96812 * 19 18 17 21 21 H 1.08996 * 109.47131 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46759 * 299.99556 * 1 2 3 23 23 H 1.08996 * 109.47185 * 59.99643 * 1 2 3 24 24 H 1.09002 * 109.46759 * 240.00444 * 2 1 3 25 25 H 1.08996 * 109.47185 * 120.00357 * 2 1 3 26 26 H 1.09002 * 109.47482 * 55.00621 * 6 4 3 27 27 H 1.09009 * 109.47243 * 174.99922 * 6 4 3 28 28 H 0.97003 * 119.99473 * 180.02562 * 10 9 7 29 29 H 1.09000 * 110.51486 * 24.16328 * 17 15 4 30 30 H 1.09000 * 110.62726 * 261.50947 * 17 15 4 31 31 H 1.09005 * 110.51421 * 241.35469 * 18 17 15 32 32 H 1.09004 * 110.63217 * 118.69765 * 18 17 15 33 33 H 1.09002 * 110.37322 * 94.85326 * 19 18 17 34 34 H 1.08999 * 110.37312 * 217.08002 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 15 3.5717 1.7239 -0.0006 5 8 4.2390 1.0610 1.1421 6 6 4.3317 1.1600 -1.5587 7 6 4.2837 -0.3447 -1.6253 8 1 3.8420 -0.9073 -0.8161 9 6 4.8028 -1.0032 -2.7199 10 7 4.7613 -2.3164 -2.7778 11 14 5.5661 -0.0302 -4.1198 12 1 7.0156 0.1593 -3.8583 13 1 5.3858 -0.7715 -5.3939 14 1 4.9037 1.2951 -4.2204 15 6 3.7620 3.5307 0.1494 16 1 3.3109 4.0330 -0.7064 17 6 3.1243 4.0313 1.4643 18 6 4.0748 5.1529 1.9394 19 6 5.1748 5.1969 0.8556 20 8 5.1617 3.8814 0.2596 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.7837 1.5788 -2.4028 27 1 5.3691 1.4926 -1.5982 28 1 5.1268 -2.7797 -3.5476 29 1 3.0843 3.2276 2.1996 30 1 2.1263 4.4290 1.2800 31 1 4.5048 4.9037 2.9096 32 1 3.5490 6.1064 1.9893 33 1 4.9407 5.9546 0.1078 34 1 6.1456 5.3987 1.3083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034062071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:29 Heat of formation + Delta-G solvation = -168.981751 kcal Electronic energy + Delta-G solvation = -16809.318760 eV Core-core repulsion = 14013.726802 eV Total energy + Delta-G solvation = -2795.591957 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.94032 -36.60556 -32.97962 -32.15371 -31.91936 -30.59182 -29.15310 -28.79301 -23.28698 -22.43740 -22.29163 -21.18765 -17.93864 -16.97871 -16.46636 -16.09054 -15.34581 -15.10736 -14.58411 -14.26778 -13.80545 -13.49410 -12.97883 -12.64298 -12.35688 -12.18766 -11.92139 -11.84231 -11.68460 -11.44936 -11.33518 -10.88956 -10.72937 -10.60977 -10.41444 -10.14025 -9.88788 -9.82616 -9.46455 -9.05887 -8.69942 -8.58392 -6.19062 -4.21797 1.99763 3.20656 3.27875 3.30298 3.79897 4.34012 4.51927 4.73089 4.85325 4.95288 5.00151 5.12245 5.30279 5.47036 5.59721 5.61318 5.63314 5.70464 5.83138 5.90242 5.94530 5.99094 6.22567 6.42837 6.43409 6.52610 6.60535 6.66199 7.41701 7.54202 8.18033 8.42074 8.78847 9.42420 10.91829 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020566 B = 0.009324 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.115023 B = 3002.440112 C = 3988.721776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.105 3.895 3 O -0.750 6.750 4 P 2.459 2.541 5 O -1.003 7.003 6 C -0.635 4.635 7 C -0.518 4.518 8 H 0.092 0.908 9 C 0.080 3.920 10 N -0.887 5.887 11 Si 0.876 3.124 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.271 1.271 15 C -0.530 4.530 16 H 0.082 0.918 17 C -0.138 4.138 18 C -0.150 4.150 19 C 0.040 3.960 20 O -0.333 6.333 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.059 0.941 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.267 0.733 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.545 11.945 6.257 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.032 3.968 3 O -0.773 6.773 4 P 2.599 2.401 5 O -1.106 7.106 6 C -0.660 4.660 7 C -0.555 4.555 8 H 0.110 0.890 9 C -0.124 4.124 10 N -0.524 5.524 11 Si 0.704 3.296 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.196 1.196 15 C -0.579 4.579 16 H 0.100 0.900 17 C -0.176 4.176 18 C -0.188 4.188 19 C -0.037 4.037 20 O -0.251 6.251 21 H 0.090 0.910 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.049 12.346 5.359 15.194 hybrid contribution 0.721 1.456 -1.772 2.404 sum -6.329 13.802 3.587 15.602 Atomic orbital electron populations 1.21908 0.94862 1.02016 1.02471 1.22428 0.94642 0.76110 1.03590 1.87719 1.55611 1.38236 1.95690 0.90580 0.47428 0.47294 0.54814 1.95005 1.78405 1.77146 1.60031 1.29798 1.07999 1.07450 1.20783 1.20384 1.42003 0.86324 1.06814 0.89014 1.24974 0.94686 0.94682 0.98043 1.69880 1.45201 1.06930 1.30434 0.86817 0.80487 0.80435 0.81901 1.19890 1.20973 1.19616 1.34463 0.87846 1.33055 1.02512 0.90018 1.22707 0.99236 1.00008 0.95634 1.22911 0.96823 0.98785 1.00268 1.23477 1.00022 0.85796 0.94383 1.89227 1.19729 1.33170 1.83021 0.91018 0.92241 0.92176 0.89447 0.91192 0.94030 0.91988 0.92329 0.88800 0.90092 0.89920 0.90714 0.92798 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.28 37.16 0.38 -1.60 16 2 C 0.10 1.77 6.39 37.16 0.24 2.00 16 3 O -0.75 -12.98 10.19 -2.92 -0.03 -13.01 16 4 P 2.46 49.57 4.13 -42.89 -0.18 49.39 16 5 O -1.00 -24.06 18.41 0.05 0.00 -24.06 16 6 C -0.64 -15.61 5.11 36.01 0.18 -15.43 16 7 C -0.52 -14.72 8.42 -34.44 -0.29 -15.01 16 8 H 0.09 2.64 6.52 -52.49 -0.34 2.29 16 9 C 0.08 2.34 5.47 -17.82 -0.10 2.25 16 10 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 11 Si 0.88 22.50 27.47 -169.99 -4.67 17.83 16 12 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 13 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 14 H -0.27 -6.76 6.54 56.52 0.37 -6.39 16 15 C -0.53 -9.11 4.19 37.93 0.16 -8.95 16 16 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 17 C -0.14 -1.97 6.65 -25.17 -0.17 -2.14 16 18 C -0.15 -1.86 7.09 -25.16 -0.18 -2.03 16 19 C 0.04 0.56 7.62 37.94 0.29 0.85 16 20 O -0.33 -6.27 11.41 -35.23 -0.40 -6.67 16 21 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 1.65 6.18 -51.93 -0.32 1.33 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 26 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 27 H 0.06 1.59 7.57 -51.92 -0.39 1.20 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.09 1.36 7.73 -51.93 -0.40 0.95 16 30 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 292.48 15.07 4.41 4.41 Total: -1.00 -34.76 292.48 -4.80 -39.56 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.23 Total: -1.26 kcal Atomic # 6 Polarization: -40.58 SS G_CDS: 0.52 Total: -40.06 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.13 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.43 Total: -43.74 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.67 Total: 17.83 kcal Atomic # 15 Polarization: 49.57 SS G_CDS: -0.18 Total: 49.39 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -34.76 -4.80 -39.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034062071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.420 kcal (2) G-P(sol) polarization free energy of solvation -34.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds