Wall clock time and date at job start Mon Mar 30 2020 06:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42902 * 109.47263 * 2 1 4 4 P 1.60998 * 123.00128 * 180.02562 * 3 2 1 5 5 O 1.48002 * 109.47106 * 304.99895 * 4 3 2 6 6 C 1.82298 * 109.47003 * 64.99925 * 4 3 2 7 7 C 1.50699 * 109.47332 * 294.99913 * 6 4 3 8 8 H 1.08002 * 120.00167 * 0.02562 * 7 6 4 9 9 C 1.37884 * 120.00055 * 179.97438 * 7 6 4 10 10 N 1.31510 * 119.99556 * 179.97438 * 9 7 6 11 11 Si 1.86796 * 119.99818 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47175 * 90.00110 * 11 9 7 13 13 H 1.48503 * 109.46912 * 209.99916 * 11 9 7 14 14 H 1.48501 * 109.47339 * 329.99514 * 11 9 7 15 15 C 1.82298 * 109.47088 * 184.99922 * 4 3 2 16 16 H 1.08999 * 110.42100 * 297.68747 * 15 4 3 17 17 C 1.54477 * 110.37086 * 60.00089 * 15 4 3 18 18 C 1.54507 * 104.06510 * 142.80886 * 17 15 4 19 19 C 1.54483 * 104.06211 * 359.97438 * 18 17 15 20 20 O 1.44428 * 104.89902 * 335.96812 * 19 18 17 21 21 H 1.08996 * 109.47131 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.46759 * 299.99556 * 1 2 3 23 23 H 1.08996 * 109.47185 * 59.99643 * 1 2 3 24 24 H 1.09002 * 109.46759 * 240.00444 * 2 1 3 25 25 H 1.08996 * 109.47185 * 120.00357 * 2 1 3 26 26 H 1.09002 * 109.47482 * 55.00621 * 6 4 3 27 27 H 1.09009 * 109.47243 * 174.99922 * 6 4 3 28 28 H 0.97003 * 119.99473 * 180.02562 * 10 9 7 29 29 H 1.09000 * 110.51486 * 24.16328 * 17 15 4 30 30 H 1.09000 * 110.62726 * 261.50947 * 17 15 4 31 31 H 1.09005 * 110.51421 * 241.35469 * 18 17 15 32 32 H 1.09004 * 110.63217 * 118.69765 * 18 17 15 33 33 H 1.09002 * 110.37322 * 94.85326 * 19 18 17 34 34 H 1.08999 * 110.37312 * 217.08002 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 15 3.5717 1.7239 -0.0006 5 8 4.2390 1.0610 1.1421 6 6 4.3317 1.1600 -1.5587 7 6 4.2837 -0.3447 -1.6253 8 1 3.8420 -0.9073 -0.8161 9 6 4.8028 -1.0032 -2.7199 10 7 4.7613 -2.3164 -2.7778 11 14 5.5661 -0.0302 -4.1198 12 1 7.0156 0.1593 -3.8583 13 1 5.3858 -0.7715 -5.3939 14 1 4.9037 1.2951 -4.2204 15 6 3.7620 3.5307 0.1494 16 1 3.3109 4.0330 -0.7064 17 6 3.1243 4.0313 1.4643 18 6 4.0748 5.1529 1.9394 19 6 5.1748 5.1969 0.8556 20 8 5.1617 3.8814 0.2596 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 3.7837 1.5788 -2.4028 27 1 5.3691 1.4926 -1.5982 28 1 5.1268 -2.7797 -3.5476 29 1 3.0843 3.2276 2.1996 30 1 2.1263 4.4290 1.2800 31 1 4.5048 4.9037 2.9096 32 1 3.5490 6.1064 1.9893 33 1 4.9407 5.9546 0.1078 34 1 6.1456 5.3987 1.3083 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034062071.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:29 Heat of formation + Delta-G solvation = -193.868802 kcal Electronic energy + Delta-G solvation = -16810.397943 eV Core-core repulsion = 14013.726802 eV Total energy + Delta-G solvation = -2796.671141 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 248.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12679 -38.03802 -35.15168 -33.77092 -33.20815 -31.80490 -31.17434 -30.01138 -24.83978 -24.00885 -23.64974 -22.31008 -19.54049 -18.94736 -17.65948 -17.34542 -16.67404 -16.55180 -16.38812 -15.92510 -15.03318 -14.89318 -14.80368 -14.33873 -14.10392 -13.49022 -13.32819 -13.07994 -12.88639 -12.78625 -12.75875 -12.42489 -12.20886 -12.12710 -12.10014 -11.70631 -11.61773 -11.18182 -11.13738 -10.92156 -10.71782 -10.37843 -8.42020 -6.48295 0.46331 1.16889 1.19327 1.28124 2.21071 2.58521 2.88817 3.38846 3.42041 3.72202 3.85086 3.97973 4.19750 4.27668 4.39705 4.45717 4.47432 4.49250 4.65328 4.67732 4.77045 4.77730 4.84090 5.02475 5.12020 5.26810 5.40172 5.46192 5.48785 5.95393 5.95748 6.57866 6.81948 7.18022 8.71736 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.020566 B = 0.009324 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.115023 B = 3002.440112 C = 3988.721776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.090 3.910 3 O -0.735 6.735 4 P 2.502 2.498 5 O -1.053 7.053 6 C -0.648 4.648 7 C -0.526 4.526 8 H 0.074 0.926 9 C 0.022 3.978 10 N -0.927 5.927 11 Si 0.926 3.074 12 H -0.274 1.274 13 H -0.269 1.269 14 H -0.258 1.258 15 C -0.546 4.546 16 H 0.104 0.896 17 C -0.147 4.147 18 C -0.147 4.147 19 C 0.025 3.975 20 O -0.373 6.373 21 H 0.089 0.911 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.060 0.940 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.271 0.729 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.788 14.340 6.266 17.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.017 3.983 3 O -0.760 6.760 4 P 2.640 2.360 5 O -1.152 7.152 6 C -0.674 4.674 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.178 4.178 10 N -0.566 5.566 11 Si 0.750 3.250 12 H -0.199 1.199 13 H -0.194 1.194 14 H -0.182 1.182 15 C -0.593 4.593 16 H 0.122 0.878 17 C -0.185 4.185 18 C -0.185 4.185 19 C -0.051 4.051 20 O -0.292 6.292 21 H 0.108 0.892 22 H 0.098 0.902 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.274 14.754 5.402 17.757 hybrid contribution 1.081 0.705 -1.734 2.161 sum -7.193 15.459 3.668 17.441 Atomic orbital electron populations 1.21922 0.91142 1.03704 1.03871 1.22664 0.97741 0.75583 1.02271 1.87728 1.54225 1.38558 1.95464 0.89094 0.47152 0.47806 0.51952 1.94969 1.79926 1.79063 1.61262 1.30000 1.08107 1.05034 1.24280 1.20720 1.40996 0.88544 1.06102 0.90853 1.25811 0.95558 0.95670 1.00766 1.69984 1.46657 1.08343 1.31572 0.86013 0.79544 0.79864 0.79593 1.19913 1.19365 1.18226 1.34362 0.88272 1.31308 1.05385 0.87842 1.22886 1.01166 1.00639 0.93760 1.22974 0.96066 0.99664 0.99772 1.23842 1.01719 0.84134 0.95373 1.89190 1.20485 1.35758 1.83801 0.89226 0.90217 0.91392 0.92197 0.91326 0.92664 0.93183 0.91984 0.89627 0.86965 0.89382 0.87416 0.91155 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 10.28 71.98 0.74 -2.77 16 2 C 0.09 3.01 6.39 71.98 0.46 3.47 16 3 O -0.74 -24.78 10.19 -26.22 -0.27 -25.05 16 4 P 2.50 100.25 4.13 -40.88 -0.17 100.08 16 5 O -1.05 -51.52 18.41 -20.59 -0.38 -51.90 16 6 C -0.65 -31.95 5.11 71.24 0.36 -31.59 16 7 C -0.53 -30.59 8.42 25.60 0.22 -30.38 16 8 H 0.07 4.41 6.52 -2.91 -0.02 4.39 16 9 C 0.02 1.29 5.47 84.66 0.46 1.76 16 10 N -0.93 -57.48 13.96 21.45 0.30 -57.18 16 11 Si 0.93 46.10 27.47 68.60 1.88 47.98 16 12 H -0.27 -13.54 7.11 99.48 0.71 -12.83 16 13 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.26 -12.17 6.54 99.48 0.65 -11.52 16 15 C -0.55 -17.77 4.19 72.48 0.30 -17.46 16 16 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 17 C -0.15 -3.79 6.65 31.61 0.21 -3.58 16 18 C -0.15 -3.15 7.09 31.61 0.22 -2.93 16 19 C 0.03 0.64 7.62 72.49 0.55 1.19 16 20 O -0.37 -13.59 11.41 -148.98 -1.70 -15.30 16 21 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 2.34 6.18 -2.39 -0.01 2.32 16 25 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 26 H 0.06 2.53 7.20 -2.39 -0.02 2.51 16 27 H 0.05 2.58 7.57 -2.38 -0.02 2.57 16 28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.09 2.33 7.73 -2.39 -0.02 2.31 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -75.95 292.48 4.21 -71.73 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.01 Total: 11.91 kcal Atomic # 6 Polarization: -85.81 SS G_CDS: 3.53 Total: -82.28 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.30 Total: -57.18 kcal Atomic # 8 Polarization: -89.90 SS G_CDS: -2.35 Total: -92.25 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.88 Total: 47.98 kcal Atomic # 15 Polarization: 100.25 SS G_CDS: -0.17 Total: 100.08 kcal Total: -75.95 4.21 -71.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034062071.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.136 kcal (2) G-P(sol) polarization free energy of solvation -75.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds