Wall clock time and date at job start Mon Mar 30 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99989 * 2 1 4 4 H 1.48502 * 109.47225 * 269.99696 * 3 2 1 5 5 H 1.48500 * 109.47381 * 29.99841 * 3 2 1 6 6 H 1.48498 * 109.47136 * 149.99635 * 3 2 1 7 7 C 1.37870 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00548 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99801 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46964 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47016 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47016 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.46770 * 180.02562 * 12 11 10 14 14 O 1.21299 * 120.00662 * 0.02562 * 13 12 11 15 15 C 1.46785 * 119.99705 * 180.02562 * 13 12 11 16 16 C 1.40021 * 120.22544 * 0.27777 * 15 13 12 17 17 C 1.37679 * 119.88276 * 180.25494 * 16 15 13 18 18 C 1.38634 * 120.33628 * 359.72052 * 17 16 15 19 19 C 1.38057 * 120.45368 * 0.02562 * 18 17 16 20 20 C 1.38683 * 120.11072 * 359.97438 * 19 18 17 21 21 O 1.35601 * 120.16706 * 179.97438 * 20 19 18 22 22 H 0.97000 * 120.00012 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47525 * 60.00322 * 9 7 2 24 24 H 1.09004 * 109.47079 * 300.00300 * 9 7 2 25 25 H 1.09003 * 109.47143 * 60.00425 * 10 9 7 26 26 H 1.08994 * 109.47284 * 300.00030 * 10 9 7 27 27 H 1.09003 * 109.46674 * 60.00314 * 11 10 9 28 28 H 1.08994 * 109.47261 * 300.00219 * 11 10 9 29 29 H 1.08998 * 109.46951 * 59.99883 * 12 11 10 30 30 H 1.09004 * 109.47253 * 300.00107 * 12 11 10 31 31 H 1.08002 * 120.05870 * 359.97438 * 16 15 13 32 32 H 1.07992 * 119.83260 * 179.74211 * 17 16 15 33 33 H 1.07990 * 119.77101 * 180.02562 * 18 17 16 34 34 H 1.07998 * 119.93801 * 179.97438 * 19 18 17 35 35 H 0.96700 * 114.00348 * 89.99777 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 6 6.0615 -4.0791 0.0015 13 6 7.5684 -4.0791 0.0020 14 8 8.1750 -3.0286 0.0025 15 6 8.3023 -5.3503 0.0020 16 6 7.6070 -6.5656 -0.0044 17 6 8.3024 -7.7538 0.0010 18 6 9.6888 -7.7537 0.0069 19 6 10.3884 -6.5636 0.0080 20 6 9.7068 -5.3558 0.0026 21 8 10.3928 -4.1862 0.0042 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6585 -3.1502 -0.8893 26 1 3.6578 -3.1506 0.8907 27 1 5.9148 -2.1228 0.8910 28 1 5.9148 -2.1227 -0.8889 29 1 5.6981 -4.5932 -0.8883 30 1 5.6981 -4.5927 0.8917 31 1 6.5270 -6.5710 -0.0089 32 1 7.7653 -8.6907 0.0003 33 1 10.2250 -8.6911 0.0106 34 1 11.4683 -6.5732 0.0130 35 1 10.5963 -3.8483 -0.8787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035307550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:34 Heat of formation + Delta-G solvation = -76.041786 kcal Electronic energy + Delta-G solvation = -16876.795906 eV Core-core repulsion = 14032.381294 eV Total energy + Delta-G solvation = -2844.414612 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52008 -38.52528 -36.94838 -35.02975 -32.68567 -31.86680 -30.14338 -29.90699 -26.26550 -24.06296 -22.86090 -21.73122 -20.03576 -19.64993 -18.55122 -16.92917 -16.55639 -16.13218 -15.83218 -15.45341 -14.76120 -14.46691 -14.27272 -13.98564 -13.87431 -12.70586 -12.62878 -12.51681 -12.27051 -12.09092 -11.95138 -11.70340 -11.10590 -11.02337 -10.72785 -10.53636 -9.91121 -9.76253 -9.63970 -9.36172 -9.27618 -9.10259 -9.01537 -8.48916 -6.00080 -3.97526 0.38701 0.91635 2.33361 3.35537 3.36586 3.42607 3.48691 3.86374 3.97560 4.47642 4.50543 4.60837 4.83635 5.03699 5.12344 5.26944 5.30493 5.35196 5.41067 5.56607 5.80451 5.87427 6.01723 6.03065 6.07387 6.18326 6.38384 6.40441 6.67910 6.81462 6.99827 7.38450 7.40718 7.51476 7.58486 7.85497 8.58961 9.04952 9.63366 11.13493 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.045799 B = 0.003671 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.222724 B = 7625.395060 C = 8203.019112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.016 4.016 10 C -0.102 4.102 11 C -0.112 4.112 12 C -0.164 4.164 13 C 0.389 3.611 14 O -0.436 6.436 15 C -0.196 4.196 16 C -0.057 4.057 17 C -0.144 4.144 18 C -0.077 4.077 19 C -0.164 4.164 20 C 0.162 3.838 21 O -0.481 6.481 22 H 0.262 0.738 23 H 0.015 0.985 24 H 0.011 0.989 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.139 0.861 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.630 -16.753 -1.659 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.150 4.150 12 C -0.201 4.201 13 C 0.266 3.734 14 O -0.310 6.310 15 C -0.197 4.197 16 C -0.076 4.076 17 C -0.162 4.162 18 C -0.095 4.095 19 C -0.182 4.182 20 C 0.116 3.884 21 O -0.292 6.292 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.029 0.971 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.157 0.843 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 20.766 -16.105 -1.053 26.301 hybrid contribution 0.360 0.791 -0.488 0.996 sum 21.126 -15.315 -1.541 26.139 Atomic orbital electron populations 1.69921 1.06310 1.26828 1.51503 1.25042 0.94734 0.99228 0.94617 0.86770 0.80437 0.83551 0.78521 1.20323 1.21441 1.18916 1.21188 0.89676 0.94390 1.50482 0.91100 1.19583 0.96922 0.92539 0.96273 1.21472 0.91679 0.99889 1.00956 1.21534 0.97534 0.93281 1.02632 1.22110 0.92369 1.01381 1.04284 1.22495 0.91824 0.87117 0.71992 1.90550 1.71714 1.33941 1.34749 1.21187 0.93826 0.96218 1.08488 1.21492 1.00673 0.90919 0.94469 1.21175 0.94311 0.98401 1.02355 1.21271 0.94395 0.97804 0.96021 1.21464 1.00834 0.91744 1.04193 1.18782 0.88852 0.85925 0.94796 1.84729 1.74923 1.36082 1.33512 0.92814 0.96638 0.97104 0.92851 0.92803 0.91920 0.91969 0.88525 0.88527 0.84288 0.85077 0.85250 0.84948 0.74643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 22.47 27.47 -169.99 -4.67 17.80 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.53 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 10 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 11 C -0.11 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.16 -2.11 4.31 -27.88 -0.12 -2.23 16 13 C 0.39 5.32 7.11 -30.86 -0.22 5.10 16 14 O -0.44 -7.33 14.79 -16.37 -0.24 -7.57 16 15 C -0.20 -2.23 5.88 -104.94 -0.62 -2.85 16 16 C -0.06 -0.50 9.46 -39.12 -0.37 -0.87 16 17 C -0.14 -1.04 10.02 -39.64 -0.40 -1.44 16 18 C -0.08 -0.54 10.03 -39.50 -0.40 -0.93 16 19 C -0.16 -1.39 9.97 -39.48 -0.39 -1.78 16 20 C 0.16 1.79 6.73 -38.59 -0.26 1.53 16 21 O -0.48 -5.59 11.58 -40.41 -0.47 -6.06 16 22 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 23 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 24 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 28 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 29 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.10 1.09 8.09 -51.93 -0.42 0.67 16 31 H 0.14 0.97 7.05 -52.49 -0.37 0.60 16 32 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.40 3.02 9.06 45.56 0.41 3.43 16 LS Contribution 300.89 15.07 4.53 4.53 Total: -1.00 -34.99 300.89 -7.75 -42.74 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: -4.11 Total: -1.82 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.57 Total: -21.86 kcal Atomic # 7 Polarization: -28.53 SS G_CDS: 0.77 Total: -27.76 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.71 Total: -13.62 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.67 Total: 17.80 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.99 -7.75 -42.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035307550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.304 kcal (2) G-P(sol) polarization free energy of solvation -34.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds