Wall clock time and date at job start Mon Mar 30 2020 06:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99989 * 2 1 4 4 H 1.48502 * 109.47225 * 269.99696 * 3 2 1 5 5 H 1.48500 * 109.47381 * 29.99841 * 3 2 1 6 6 H 1.48498 * 109.47136 * 149.99635 * 3 2 1 7 7 C 1.37870 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00548 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99801 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46964 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47016 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47016 * 179.97438 * 11 10 9 13 13 C 1.50695 * 109.46770 * 180.02562 * 12 11 10 14 14 O 1.21299 * 120.00662 * 0.02562 * 13 12 11 15 15 C 1.46785 * 119.99705 * 180.02562 * 13 12 11 16 16 C 1.40021 * 120.22544 * 0.27777 * 15 13 12 17 17 C 1.37679 * 119.88276 * 180.25494 * 16 15 13 18 18 C 1.38634 * 120.33628 * 359.72052 * 17 16 15 19 19 C 1.38057 * 120.45368 * 0.02562 * 18 17 16 20 20 C 1.38683 * 120.11072 * 359.97438 * 19 18 17 21 21 O 1.35601 * 120.16706 * 179.97438 * 20 19 18 22 22 H 0.97000 * 120.00012 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47525 * 60.00322 * 9 7 2 24 24 H 1.09004 * 109.47079 * 300.00300 * 9 7 2 25 25 H 1.09003 * 109.47143 * 60.00425 * 10 9 7 26 26 H 1.08994 * 109.47284 * 300.00030 * 10 9 7 27 27 H 1.09003 * 109.46674 * 60.00314 * 11 10 9 28 28 H 1.08994 * 109.47261 * 300.00219 * 11 10 9 29 29 H 1.08998 * 109.46951 * 59.99883 * 12 11 10 30 30 H 1.09004 * 109.47253 * 300.00107 * 12 11 10 31 31 H 1.08002 * 120.05870 * 359.97438 * 16 15 13 32 32 H 1.07992 * 119.83260 * 179.74211 * 17 16 15 33 33 H 1.07990 * 119.77101 * 180.02562 * 18 17 16 34 34 H 1.07998 * 119.93801 * 179.97438 * 19 18 17 35 35 H 0.96700 * 114.00348 * 89.99777 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0214 -2.6366 0.0010 11 6 5.5515 -2.6366 0.0009 12 6 6.0615 -4.0791 0.0015 13 6 7.5684 -4.0791 0.0020 14 8 8.1750 -3.0286 0.0025 15 6 8.3023 -5.3503 0.0020 16 6 7.6070 -6.5656 -0.0044 17 6 8.3024 -7.7538 0.0010 18 6 9.6888 -7.7537 0.0069 19 6 10.3884 -6.5636 0.0080 20 6 9.7068 -5.3558 0.0026 21 8 10.3928 -4.1862 0.0042 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6801 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6585 -3.1502 -0.8893 26 1 3.6578 -3.1506 0.8907 27 1 5.9148 -2.1228 0.8910 28 1 5.9148 -2.1227 -0.8889 29 1 5.6981 -4.5932 -0.8883 30 1 5.6981 -4.5927 0.8917 31 1 6.5270 -6.5710 -0.0089 32 1 7.7653 -8.6907 0.0003 33 1 10.2250 -8.6911 0.0106 34 1 11.4683 -6.5732 0.0130 35 1 10.5963 -3.8483 -0.8787 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035307550.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:34 Heat of formation + Delta-G solvation = -98.186085 kcal Electronic energy + Delta-G solvation = -16877.756154 eV Core-core repulsion = 14032.381294 eV Total energy + Delta-G solvation = -2845.374861 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.34336 -39.45784 -37.66982 -36.66207 -34.62863 -32.88860 -31.47892 -30.75469 -27.85148 -25.14848 -23.79099 -22.95230 -21.73508 -20.61453 -19.30079 -18.85179 -17.67892 -16.94178 -16.85228 -16.40011 -16.32274 -15.59293 -15.42324 -15.15435 -14.84820 -14.68160 -13.87392 -13.74752 -13.39815 -13.23421 -13.11723 -12.85342 -12.62813 -12.29944 -12.08449 -11.78574 -11.76063 -11.50531 -11.36451 -11.27917 -10.77001 -10.44075 -10.01836 -9.67541 -8.30658 -6.33818 -0.35814 0.29998 1.33785 1.35565 1.46975 1.48334 2.35101 2.70279 3.00575 3.04723 3.24551 3.83617 4.00524 4.11437 4.13216 4.16921 4.38491 4.45613 4.64009 4.64589 4.76791 4.79385 4.88329 4.98138 5.12256 5.17832 5.25734 5.30173 5.37612 5.46991 5.58043 5.64070 5.67490 5.82846 6.28605 6.60078 6.74172 6.75010 7.31133 8.86042 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.045799 B = 0.003671 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.222724 B = 7625.395060 C = 8203.019112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.948 3.052 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.017 4.017 10 C -0.094 4.094 11 C -0.104 4.104 12 C -0.158 4.158 13 C 0.391 3.609 14 O -0.481 6.481 15 C -0.223 4.223 16 C -0.058 4.058 17 C -0.143 4.143 18 C -0.066 4.066 19 C -0.170 4.170 20 C 0.140 3.860 21 O -0.503 6.503 22 H 0.266 0.734 23 H 0.012 0.988 24 H 0.013 0.987 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.163 0.837 34 H 0.147 0.853 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.204 -18.486 -1.796 28.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.193 4.193 3 Si 0.771 3.229 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.177 1.177 7 C -0.569 4.569 8 H 0.056 0.944 9 C -0.055 4.055 10 C -0.131 4.131 11 C -0.142 4.142 12 C -0.195 4.195 13 C 0.271 3.729 14 O -0.359 6.359 15 C -0.225 4.225 16 C -0.076 4.076 17 C -0.161 4.161 18 C -0.084 4.084 19 C -0.188 4.188 20 C 0.094 3.906 21 O -0.316 6.316 22 H 0.075 0.925 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.174 0.826 32 H 0.179 0.821 33 H 0.180 0.820 34 H 0.165 0.835 35 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 22.345 -17.867 -1.197 28.635 hybrid contribution -0.164 1.180 -0.452 1.274 sum 22.181 -16.686 -1.649 27.806 Atomic orbital electron populations 1.70059 1.08123 1.28116 1.52863 1.25991 0.95621 1.03400 0.94260 0.85689 0.79337 0.78611 0.79219 1.19109 1.20680 1.17731 1.21548 0.92103 0.93251 1.50014 0.94437 1.19582 0.93933 0.95898 0.96042 1.21342 0.93696 0.96732 1.01375 1.21352 0.95113 0.96102 1.01584 1.22077 0.92134 0.98837 1.06465 1.22784 0.92085 0.87580 0.70433 1.90533 1.72431 1.35494 1.37405 1.21104 0.94115 0.95957 1.11306 1.21756 1.01655 0.90478 0.93671 1.21582 0.94625 0.98970 1.00885 1.21721 0.94649 0.98462 0.93590 1.21687 1.01753 0.91363 1.04032 1.19119 0.89101 0.86475 0.95854 1.84681 1.75135 1.36975 1.34801 0.92478 0.96927 0.96861 0.92296 0.92536 0.93304 0.92819 0.86029 0.86502 0.82578 0.82059 0.81984 0.83507 0.73444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.86 13.96 21.44 0.30 -60.56 16 2 C 0.00 0.24 5.47 84.65 0.46 0.70 16 3 Si 0.95 46.26 27.47 68.60 1.88 48.14 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.25 -11.82 6.54 99.48 0.65 -11.16 16 7 C -0.53 -31.56 9.66 25.60 0.25 -31.31 16 8 H 0.04 2.40 7.99 -2.91 -0.02 2.38 16 9 C -0.02 -0.84 4.04 29.85 0.12 -0.72 16 10 C -0.09 -3.66 5.15 30.60 0.16 -3.50 16 11 C -0.10 -3.43 4.50 30.60 0.14 -3.29 16 12 C -0.16 -3.80 4.31 29.85 0.13 -3.67 16 13 C 0.39 10.51 7.11 27.92 0.20 10.70 16 14 O -0.48 -16.53 14.79 17.86 0.26 -16.27 16 15 C -0.22 -4.84 5.88 -20.07 -0.12 -4.95 16 16 C -0.06 -0.85 9.46 22.57 0.21 -0.64 16 17 C -0.14 -1.51 10.02 22.23 0.22 -1.29 16 18 C -0.07 -0.69 10.03 22.32 0.22 -0.46 16 19 C -0.17 -2.53 9.97 22.33 0.22 -2.31 16 20 C 0.14 2.99 6.73 22.91 0.15 3.14 16 21 O -0.50 -11.93 11.58 -68.16 -0.79 -12.72 16 22 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 23 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 24 H 0.01 0.63 7.57 -2.38 -0.02 0.62 16 25 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 26 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 1.73 8.10 -2.39 -0.02 1.71 16 28 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 29 H 0.12 2.32 8.08 -2.39 -0.02 2.30 16 30 H 0.12 2.35 8.09 -2.38 -0.02 2.33 16 31 H 0.16 1.65 7.05 -2.91 -0.02 1.63 16 32 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 33 H 0.16 0.61 8.06 -2.92 -0.02 0.58 16 34 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.41 6.59 9.06 -74.06 -0.67 5.92 16 Total: -1.00 -77.22 300.89 4.39 -72.84 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.36 Total: 6.17 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 2.37 Total: -37.60 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.30 Total: -60.56 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.52 Total: -28.99 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.14 kcal Total: -77.22 4.39 -72.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035307550.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.350 kcal (2) G-P(sol) polarization free energy of solvation -77.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds