Wall clock time and date at job start Mon Mar 30 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47023 * 2 1 4 4 C 1.50698 * 109.47001 * 120.00254 * 2 1 3 5 5 N 1.32014 * 125.94936 * 299.68499 * 4 2 1 6 6 C 1.33443 * 110.01490 * 179.86529 * 5 4 2 7 7 C 1.40357 * 131.69750 * 180.12793 * 6 5 4 8 8 C 1.36550 * 119.49099 * 180.30947 * 7 6 5 9 9 C 1.40283 * 119.69005 * 359.97438 * 8 7 6 10 10 F 1.35095 * 119.96599 * 180.02562 * 9 8 7 11 11 C 1.35567 * 120.07146 * 0.02562 * 9 8 7 12 12 N 1.36346 * 120.53743 * 359.97438 * 11 9 8 13 13 C 1.38460 * 132.41998 * 180.02562 * 12 11 9 14 14 C 1.39826 * 126.89721 * 0.02562 * 13 12 11 15 15 H 1.07990 * 120.00288 * 141.10371 * 14 13 12 16 16 C 1.39872 * 119.99569 * 321.10188 * 14 13 12 17 17 N 1.31041 * 119.99449 * 156.58906 * 16 14 13 18 18 Si 1.86792 * 120.00205 * 336.58571 * 16 14 13 19 19 H 1.48506 * 109.47215 * 95.40291 * 18 16 14 20 20 H 1.48498 * 109.47010 * 215.39844 * 18 16 14 21 21 H 1.48495 * 109.47222 * 335.40191 * 18 16 14 22 22 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47142 * 59.99529 * 1 2 3 24 24 H 1.09000 * 109.46870 * 299.99673 * 1 2 3 25 25 H 1.09000 * 109.46870 * 240.00327 * 2 1 3 26 26 H 1.09000 * 109.47030 * 60.00425 * 3 2 1 27 27 H 1.08999 * 109.46880 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47098 * 300.00445 * 3 2 1 29 29 H 1.08000 * 120.25560 * 0.28476 * 7 6 5 30 30 H 1.08000 * 120.15661 * 179.97438 * 8 7 6 31 31 H 1.08001 * 119.72902 * 180.02562 * 11 9 8 32 32 H 0.96999 * 119.99848 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7917 -0.3600 2.4802 6 6 2.3880 -1.2120 3.3164 7 6 2.4294 -1.2696 4.7182 8 6 3.1346 -2.2664 5.3295 9 6 3.8077 -3.2196 4.5508 10 9 4.5067 -4.2085 5.1497 11 6 3.7576 -3.1495 3.1978 12 7 3.0552 -2.1568 2.5811 13 6 2.8405 -1.8548 1.2471 14 6 3.3316 -2.5518 0.1389 15 1 2.7085 -2.6888 -0.7324 16 6 4.6299 -3.0716 0.1589 17 7 4.9453 -4.0768 -0.6204 18 14 5.9143 -2.3329 1.2964 19 1 5.9703 -3.1179 2.5558 20 1 7.2421 -2.3674 0.6323 21 1 5.5517 -0.9265 1.6054 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.9078 -0.5311 5.3088 30 1 3.1741 -2.3208 6.4074 31 1 4.2775 -3.8865 2.6037 32 1 5.8458 -4.4371 -0.6068 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036244457.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:07 Heat of formation + Delta-G solvation = 22.447348 kcal Electronic energy + Delta-G solvation = -18136.561585 eV Core-core repulsion = 15205.250228 eV Total energy + Delta-G solvation = -2931.311357 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.40299 -41.43659 -36.60445 -34.17529 -33.85671 -32.35650 -29.19976 -28.49255 -26.48197 -25.26246 -23.17447 -21.89192 -20.97717 -18.74802 -18.39360 -16.98422 -16.34819 -15.52559 -15.42175 -15.03798 -14.39224 -14.22778 -13.92670 -13.43572 -13.24611 -13.08862 -12.53266 -12.50955 -11.99698 -11.60689 -11.45187 -11.34316 -10.75976 -10.71869 -10.56273 -10.41240 -10.15450 -10.08267 -9.99144 -9.40407 -8.87030 -7.63400 -7.15019 -7.04571 -4.53992 1.42744 2.04243 2.79395 2.96786 3.07492 3.51754 3.65148 3.75490 4.35963 4.71398 4.88963 5.06553 5.22112 5.43025 5.67942 5.69049 5.92280 5.94449 6.20742 6.27242 6.35491 6.47261 6.49546 6.56567 6.58505 6.67887 6.72435 6.92719 6.94584 7.06883 7.44144 7.48388 7.95648 8.12229 8.41096 8.51151 9.06166 9.88772 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.012087 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.069683 B = 2316.036977 C = 3399.391503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.006 3.994 3 C -0.135 4.135 4 C -0.032 4.032 5 N -0.449 5.449 6 C 0.099 3.901 7 C -0.018 4.018 8 C -0.196 4.196 9 C 0.045 3.955 10 F -0.140 7.140 11 C 0.036 3.964 12 N -0.386 5.386 13 C 0.161 3.839 14 C -0.446 4.446 15 H 0.112 0.888 16 C 0.090 3.910 17 N -0.797 5.797 18 Si 0.861 3.139 19 H -0.253 1.253 20 H -0.273 1.273 21 H -0.251 1.251 22 H 0.049 0.951 23 H 0.046 0.954 24 H 0.054 0.946 25 H 0.083 0.917 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.046 0.954 29 H 0.140 0.860 30 H 0.134 0.866 31 H 0.159 0.841 32 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.605 3.520 4.363 5.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.013 4.013 3 C -0.192 4.192 4 C -0.169 4.169 5 N -0.167 5.167 6 C -0.135 4.135 7 C -0.038 4.038 8 C -0.219 4.219 9 C 0.022 3.978 10 F -0.119 7.119 11 C -0.087 4.087 12 N -0.067 5.067 13 C 0.050 3.950 14 C -0.480 4.480 15 H 0.130 0.870 16 C -0.130 4.130 17 N -0.423 5.423 18 Si 0.684 3.316 19 H -0.178 1.178 20 H -0.198 1.198 21 H -0.174 1.174 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.101 0.899 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.158 0.842 30 H 0.151 0.849 31 H 0.176 0.824 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.914 4.000 4.510 6.325 hybrid contribution 1.555 -0.855 0.374 1.813 sum -0.360 3.145 4.884 5.820 Atomic orbital electron populations 1.21756 0.95626 1.01207 1.00698 1.19165 0.94294 0.94401 0.93463 1.21737 1.00821 0.96010 1.00661 1.20902 1.08023 0.96036 0.91949 1.69653 1.21193 1.24846 1.01044 1.20032 1.05551 0.95087 0.92806 1.19819 0.96988 0.97169 0.89806 1.20528 1.04211 0.97389 0.99772 1.16438 1.01061 0.90889 0.89457 1.91431 1.77279 1.59813 1.83366 1.21151 0.99711 0.95087 0.92705 1.42801 1.35194 1.20458 1.08236 1.18987 0.99735 0.95710 0.80586 1.18247 0.98823 1.31103 0.99824 0.87021 1.25929 0.99287 0.92497 0.95239 1.69793 1.21834 1.16565 1.34100 0.87248 0.80658 0.82756 0.80903 1.17789 1.19812 1.17399 0.93223 0.93521 0.92687 0.89905 0.92711 0.93183 0.93503 0.84218 0.84853 0.82370 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.18 37.16 0.34 -1.94 16 2 C 0.01 0.12 3.29 -91.77 -0.30 -0.18 16 3 C -0.13 -2.31 9.18 37.16 0.34 -1.97 16 4 C -0.03 -0.74 5.71 -81.82 -0.47 -1.21 16 5 N -0.45 -10.38 11.23 -8.11 -0.09 -10.47 16 6 C 0.10 2.24 7.77 -155.52 -1.21 1.03 16 7 C -0.02 -0.33 10.09 -39.39 -0.40 -0.73 16 8 C -0.20 -3.47 10.06 -39.42 -0.40 -3.86 16 9 C 0.05 0.91 7.26 -39.77 -0.29 0.62 16 10 F -0.14 -2.67 17.26 2.25 0.04 -2.63 16 11 C 0.04 0.81 7.39 -16.50 -0.12 0.69 16 12 N -0.39 -9.21 2.48 -59.95 -0.15 -9.36 16 13 C 0.16 3.97 5.45 -83.58 -0.46 3.52 16 14 C -0.45 -11.32 9.12 -38.38 -0.35 -11.67 16 15 H 0.11 2.91 7.90 -52.49 -0.41 2.50 16 16 C 0.09 2.25 4.89 -17.28 -0.08 2.16 16 17 N -0.80 -20.08 13.94 55.55 0.77 -19.30 16 18 Si 0.86 19.55 24.44 -169.99 -4.15 15.39 16 19 H -0.25 -5.55 5.54 56.52 0.31 -5.23 16 20 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.08 1.61 7.42 -51.93 -0.39 1.23 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 30 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 31 H 0.16 3.58 5.53 -52.49 -0.29 3.29 16 32 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 272.61 15.07 4.11 4.11 Total: -1.00 -26.83 272.61 -6.56 -33.39 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -3.70 Total: 2.40 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.39 Total: -13.54 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 0.53 Total: -39.13 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.04 Total: -2.63 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.15 Total: 15.39 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -26.83 -6.56 -33.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036244457.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.841 kcal (2) G-P(sol) polarization free energy of solvation -26.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds