Wall clock time and date at job start Mon Mar 30 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47023 * 2 1 4 4 C 1.50698 * 109.47001 * 120.00254 * 2 1 3 5 5 N 1.32014 * 125.94936 * 299.68499 * 4 2 1 6 6 C 1.33443 * 110.01490 * 179.86529 * 5 4 2 7 7 C 1.40357 * 131.69750 * 180.12793 * 6 5 4 8 8 C 1.36550 * 119.49099 * 180.30947 * 7 6 5 9 9 C 1.40283 * 119.69005 * 359.97438 * 8 7 6 10 10 F 1.35095 * 119.96599 * 180.02562 * 9 8 7 11 11 C 1.35567 * 120.07146 * 0.02562 * 9 8 7 12 12 N 1.36346 * 120.53743 * 359.97438 * 11 9 8 13 13 C 1.38460 * 132.41998 * 180.02562 * 12 11 9 14 14 C 1.39826 * 126.89721 * 0.02562 * 13 12 11 15 15 H 1.07990 * 120.00288 * 141.10371 * 14 13 12 16 16 C 1.39872 * 119.99569 * 321.10188 * 14 13 12 17 17 N 1.31041 * 119.99449 * 156.58906 * 16 14 13 18 18 Si 1.86792 * 120.00205 * 336.58571 * 16 14 13 19 19 H 1.48506 * 109.47215 * 95.40291 * 18 16 14 20 20 H 1.48498 * 109.47010 * 215.39844 * 18 16 14 21 21 H 1.48495 * 109.47222 * 335.40191 * 18 16 14 22 22 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47142 * 59.99529 * 1 2 3 24 24 H 1.09000 * 109.46870 * 299.99673 * 1 2 3 25 25 H 1.09000 * 109.46870 * 240.00327 * 2 1 3 26 26 H 1.09000 * 109.47030 * 60.00425 * 3 2 1 27 27 H 1.08999 * 109.46880 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47098 * 300.00445 * 3 2 1 29 29 H 1.08000 * 120.25560 * 0.28476 * 7 6 5 30 30 H 1.08000 * 120.15661 * 179.97438 * 8 7 6 31 31 H 1.08001 * 119.72902 * 180.02562 * 11 9 8 32 32 H 0.96999 * 119.99848 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7917 -0.3600 2.4802 6 6 2.3880 -1.2120 3.3164 7 6 2.4294 -1.2696 4.7182 8 6 3.1346 -2.2664 5.3295 9 6 3.8077 -3.2196 4.5508 10 9 4.5067 -4.2085 5.1497 11 6 3.7576 -3.1495 3.1978 12 7 3.0552 -2.1568 2.5811 13 6 2.8405 -1.8548 1.2471 14 6 3.3316 -2.5518 0.1389 15 1 2.7085 -2.6888 -0.7324 16 6 4.6299 -3.0716 0.1589 17 7 4.9453 -4.0768 -0.6204 18 14 5.9143 -2.3329 1.2964 19 1 5.9703 -3.1179 2.5558 20 1 7.2421 -2.3674 0.6323 21 1 5.5517 -0.9265 1.6054 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.9078 -0.5311 5.3088 30 1 3.1741 -2.3208 6.4074 31 1 4.2775 -3.8865 2.6037 32 1 5.8458 -4.4371 -0.6068 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036244457.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:06 Heat of formation + Delta-G solvation = 8.188970 kcal Electronic energy + Delta-G solvation = -18137.179874 eV Core-core repulsion = 15205.250228 eV Total energy + Delta-G solvation = -2931.929646 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.01097 -43.18315 -38.23670 -35.90858 -35.44999 -34.07059 -30.95789 -30.16191 -27.85113 -27.02393 -24.77186 -23.56640 -22.67140 -20.42749 -20.15803 -18.61554 -18.06755 -17.24992 -17.02389 -16.77607 -16.05702 -15.92141 -15.50656 -14.97151 -14.90902 -14.76187 -14.08107 -13.95092 -13.72712 -13.25459 -13.11619 -12.91014 -12.39883 -12.31622 -12.16169 -11.99635 -11.80855 -11.66332 -11.57301 -11.20165 -10.64343 -9.33313 -9.00494 -8.80871 -6.41842 -0.20795 0.38008 0.99166 1.11450 1.22498 1.75982 1.89273 1.93219 2.67895 2.85341 3.23417 3.44922 3.61796 3.90303 4.18552 4.19725 4.42543 4.49428 4.72810 4.83614 4.93422 4.94221 4.96469 5.04309 5.09563 5.15510 5.19467 5.33358 5.53215 5.56636 5.69089 5.75979 6.14498 6.27071 6.60173 6.66805 7.28572 8.09028 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.012087 C = 0.008235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.069683 B = 2316.036977 C = 3399.391503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.002 4.002 3 C -0.125 4.125 4 C -0.032 4.032 5 N -0.468 5.468 6 C 0.096 3.904 7 C -0.021 4.021 8 C -0.168 4.168 9 C 0.064 3.936 10 F -0.130 7.130 11 C -0.005 4.005 12 N -0.388 5.388 13 C 0.119 3.881 14 C -0.468 4.468 15 H 0.086 0.914 16 C 0.067 3.933 17 N -0.834 5.834 18 Si 0.905 3.095 19 H -0.242 1.242 20 H -0.259 1.259 21 H -0.277 1.277 22 H 0.036 0.964 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.182 0.818 30 H 0.184 0.816 31 H 0.147 0.853 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 4.645 7.081 8.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.022 4.022 3 C -0.183 4.183 4 C -0.168 4.168 5 N -0.186 5.186 6 C -0.139 4.139 7 C -0.041 4.041 8 C -0.191 4.191 9 C 0.041 3.959 10 F -0.109 7.109 11 C -0.127 4.127 12 N -0.067 5.067 13 C 0.008 3.992 14 C -0.503 4.503 15 H 0.104 0.896 16 C -0.149 4.149 17 N -0.462 5.462 18 Si 0.728 3.272 19 H -0.166 1.166 20 H -0.184 1.184 21 H -0.202 1.202 22 H 0.055 0.945 23 H 0.097 0.903 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.098 0.902 29 H 0.199 0.801 30 H 0.202 0.798 31 H 0.164 0.836 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.270 5.100 7.215 9.123 hybrid contribution 1.565 -1.196 -0.201 1.980 sum -0.705 3.904 7.014 8.058 Atomic orbital electron populations 1.21660 0.93556 1.00844 1.02166 1.19349 0.96031 0.95254 0.91547 1.21657 0.99765 0.94682 1.02198 1.21515 1.06671 0.95444 0.93169 1.69707 1.22508 1.25415 1.01009 1.20996 1.04249 0.94100 0.94577 1.20369 0.97277 0.98416 0.88060 1.21074 1.01139 0.94944 1.01989 1.16744 0.99594 0.90781 0.88823 1.91468 1.76970 1.59543 1.82943 1.21250 1.01839 0.95753 0.93889 1.42914 1.34894 1.20645 1.08259 1.19089 1.02120 0.97046 0.80968 1.18088 0.99261 1.33082 0.99855 0.89625 1.26285 0.99956 0.92571 0.96127 1.69805 1.22623 1.17794 1.36010 0.86581 0.79672 0.80477 0.80456 1.16612 1.18408 1.20224 0.94510 0.90304 0.92841 0.91065 0.92836 0.94753 0.90193 0.80117 0.79840 0.83591 0.89568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.09 9.18 71.99 0.66 -3.43 16 2 C 0.00 -0.08 3.29 -11.54 -0.04 -0.12 16 3 C -0.13 -4.19 9.18 71.98 0.66 -3.53 16 4 C -0.03 -1.49 5.71 42.98 0.25 -1.25 16 5 N -0.47 -21.24 11.23 -179.57 -2.02 -23.25 16 6 C 0.10 4.20 7.77 133.70 1.04 5.23 16 7 C -0.02 -0.71 10.09 22.39 0.23 -0.48 16 8 C -0.17 -5.07 10.06 22.37 0.22 -4.85 16 9 C 0.06 2.36 7.26 22.15 0.16 2.52 16 10 F -0.13 -4.51 17.26 44.97 0.78 -3.73 16 11 C 0.00 -0.21 7.39 83.37 0.62 0.41 16 12 N -0.39 -18.46 2.48 -343.58 -0.85 -19.32 16 13 C 0.12 6.07 5.45 38.93 0.21 6.28 16 14 C -0.47 -25.18 9.12 23.05 0.21 -24.97 16 15 H 0.09 4.86 7.90 -2.92 -0.02 4.84 16 16 C 0.07 3.47 4.89 85.21 0.42 3.89 16 17 N -0.83 -43.89 13.94 21.83 0.30 -43.58 16 18 Si 0.90 41.33 24.44 68.60 1.68 43.01 16 19 H -0.24 -10.40 5.54 99.48 0.55 -9.85 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 22 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 24 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.07 2.89 7.42 -2.39 -0.02 2.87 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.18 4.51 8.06 -2.91 -0.02 4.48 16 30 H 0.18 3.81 8.06 -2.91 -0.02 3.79 16 31 H 0.15 6.70 5.53 -2.91 -0.02 6.68 16 32 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 Total: -1.00 -59.98 272.61 5.50 -54.49 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.97 Total: 12.69 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 4.63 Total: -20.30 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.56 Total: -86.15 kcal Atomic # 9 Polarization: -4.51 SS G_CDS: 0.78 Total: -3.73 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.68 Total: 43.01 kcal Total: -59.98 5.50 -54.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036244457.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.675 kcal (2) G-P(sol) polarization free energy of solvation -59.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds