Wall clock time and date at job start Mon Mar 30 2020 06:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 119.99631 * 2 1 4 4 H 1.48503 * 109.47047 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47205 * 299.99630 * 3 2 1 6 6 H 1.48499 * 109.47391 * 59.99757 * 3 2 1 7 7 C 1.39887 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99692 * 186.75782 * 7 2 1 9 9 C 1.41215 * 120.00405 * 6.76012 * 7 2 1 10 10 C 1.40832 * 120.17971 * 210.33370 * 9 7 2 11 11 C 1.36436 * 119.80773 * 179.97438 * 10 9 7 12 12 C 1.39308 * 120.18804 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.81941 * 180.02562 * 12 11 10 14 14 C 1.42905 * 116.99809 * 354.08985 * 13 12 11 15 15 H 1.08997 * 110.43696 * 322.87549 * 14 13 12 16 16 C 1.54898 * 110.59696 * 85.48603 * 14 13 12 17 17 C 1.54886 * 102.74675 * 156.67749 * 16 14 13 18 18 C 1.54269 * 104.19736 * 322.05669 * 17 16 14 19 19 C 1.53876 * 106.59720 * 23.61223 * 18 17 16 20 20 H 1.09005 * 110.03079 * 240.71551 * 19 18 17 21 21 O 1.42894 * 110.07356 * 119.30675 * 19 18 17 22 22 C 1.39317 * 120.36474 * 0.27529 * 12 11 10 23 23 C 1.36439 * 120.18228 * 359.44212 * 22 12 11 24 24 H 0.97000 * 120.00561 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.09365 * 359.95131 * 10 9 7 26 26 H 1.08002 * 119.90132 * 180.02562 * 11 10 9 27 27 H 1.08994 * 110.75296 * 274.99209 * 16 14 13 28 28 H 1.08998 * 110.75402 * 38.35931 * 16 14 13 29 29 H 1.09002 * 110.48470 * 203.38172 * 17 16 14 30 30 H 1.08993 * 110.60207 * 80.79093 * 17 16 14 31 31 H 1.09007 * 110.03411 * 264.33141 * 18 17 16 32 32 H 1.08992 * 110.07397 * 142.91783 * 18 17 16 33 33 H 0.96701 * 114.00091 * 62.81245 * 21 19 18 34 34 H 1.07994 * 119.90484 * 179.70540 * 22 12 11 35 35 H 1.08003 * 120.09214 * 180.27316 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2126 6 1 1.8839 2.3965 1.2124 7 6 2.0082 -1.2115 0.0005 8 1 3.0827 -1.2146 0.1106 9 6 1.3096 -2.4303 -0.1429 10 6 1.8036 -3.6044 0.4579 11 6 1.1222 -4.7777 0.3149 12 6 -0.0592 -4.8164 -0.4224 13 8 -0.7310 -5.9871 -0.5593 14 6 -0.1051 -7.1595 -0.0340 15 1 0.9726 -7.1188 -0.1918 16 6 -0.4265 -7.3202 1.4727 17 6 -0.2257 -8.8383 1.7050 18 6 -0.7754 -9.4935 0.4211 19 6 -0.6987 -8.4261 -0.6846 20 1 -1.6963 -8.2153 -1.0700 21 8 0.1495 -8.8761 -1.7428 22 6 -0.5518 -3.6605 -1.0242 23 6 0.1144 -2.4778 -0.8861 24 1 -0.4851 0.8400 -0.0004 25 1 2.7193 -3.5760 1.0299 26 1 1.4994 -5.6789 0.7753 27 1 0.2692 -6.7411 2.0799 28 1 -1.4564 -7.0303 1.6810 29 1 -0.7928 -9.1693 2.5751 30 1 0.8319 -9.0707 1.8291 31 1 -1.8103 -9.8007 0.5722 32 1 -0.1659 -10.3556 0.1506 33 1 -0.1700 -9.6705 -2.1922 34 1 -1.4658 -3.6999 -1.5981 35 1 -0.2713 -1.5818 -1.3496 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037690282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:58 Heat of formation + Delta-G solvation = -79.659171 kcal Electronic energy + Delta-G solvation = -17692.919556 eV Core-core repulsion = 14848.348082 eV Total energy + Delta-G solvation = -2844.571474 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.55192 -37.79584 -36.08598 -34.69178 -33.18119 -29.84367 -29.02449 -27.91870 -27.32876 -24.69815 -21.63847 -20.98667 -20.57060 -19.74056 -17.74122 -17.25429 -16.57511 -15.61178 -15.22434 -15.07543 -14.29357 -13.91769 -13.67267 -13.12143 -13.06426 -12.59982 -12.39049 -12.14172 -12.00581 -11.64736 -11.37489 -11.18998 -11.08554 -10.81496 -10.67934 -10.53207 -10.28786 -10.03536 -9.80143 -9.73620 -9.24708 -9.04649 -7.59674 -6.89496 -6.60221 -4.24334 2.81067 2.99359 3.12519 3.17726 3.22733 3.84279 4.01288 4.30584 4.53809 4.71980 4.88468 4.92526 5.30995 5.45758 5.48851 5.52702 5.69057 5.76095 5.79083 5.91714 6.02441 6.08068 6.19284 6.29335 6.32610 6.78864 7.02509 7.16666 7.25886 7.52831 7.61482 7.64946 7.83313 8.06275 8.26859 8.50507 8.70902 8.96927 9.03387 10.34209 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.052165 B = 0.004587 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.634012 B = 6102.744927 C = 6230.742125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.071 3.929 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.084 3.916 10 C -0.190 4.190 11 C -0.172 4.172 12 C 0.004 3.996 13 O -0.319 6.319 14 C 0.095 3.905 15 H 0.082 0.918 16 C -0.146 4.146 17 C -0.120 4.120 18 C -0.152 4.152 19 C 0.102 3.898 20 H 0.069 0.931 21 O -0.561 6.561 22 C -0.126 4.126 23 C -0.123 4.123 24 H 0.277 0.723 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.375 0.625 34 H 0.097 0.903 35 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.054 -13.202 0.931 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.144 4.144 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.082 3.918 10 C -0.209 4.209 11 C -0.191 4.191 12 C -0.039 4.039 13 O -0.235 6.235 14 C 0.037 3.963 15 H 0.099 0.901 16 C -0.183 4.183 17 C -0.158 4.158 18 C -0.190 4.190 19 C 0.043 3.957 20 H 0.087 0.913 21 O -0.367 6.367 22 C -0.145 4.145 23 C -0.143 4.143 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.222 0.778 34 H 0.115 0.885 35 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.077 -12.532 1.034 12.745 hybrid contribution 0.153 0.239 0.095 0.299 sum -1.924 -12.293 1.129 12.494 Atomic orbital electron populations 1.69786 1.07266 1.28608 1.38451 1.25838 0.94864 1.01037 0.92649 0.86217 0.80650 0.81126 0.78377 1.18651 1.19936 1.20121 1.19476 0.94979 0.90206 1.44840 0.90713 1.17625 0.92347 0.92226 0.89642 1.20657 1.01765 0.93402 1.05121 1.20464 0.96840 0.97995 1.03755 1.18626 0.95120 0.84781 1.05386 1.85843 1.45924 1.13786 1.77941 1.22795 0.98121 0.83740 0.91626 0.90054 1.23011 1.03218 0.95969 0.96137 1.22228 1.01293 0.95212 0.97080 1.22816 1.01715 0.98376 0.96112 1.22394 0.93900 0.92445 0.86954 0.91275 1.86584 1.51418 1.48603 1.50073 1.19892 1.00638 0.91268 1.02722 1.21101 0.97387 0.95720 1.00065 0.91211 0.88700 0.88587 0.90321 0.90271 0.91288 0.91292 0.91058 0.90754 0.77846 0.88500 0.85196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.53 10.73 55.54 0.60 -20.93 16 2 C 0.07 1.82 5.31 -17.34 -0.09 1.72 16 3 Si 0.91 19.19 29.56 -169.99 -5.03 14.16 16 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.46 -12.57 9.05 -37.84 -0.34 -12.91 16 8 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.08 2.28 5.55 -106.80 -0.59 1.69 16 10 C -0.19 -4.77 9.74 -39.25 -0.38 -5.15 16 11 C -0.17 -3.99 8.60 -39.83 -0.34 -4.34 16 12 C 0.00 0.09 6.65 -38.78 -0.26 -0.16 16 13 O -0.32 -6.78 9.85 -18.73 -0.18 -6.97 16 14 C 0.09 1.62 2.42 -25.07 -0.06 1.56 16 15 H 0.08 1.50 6.45 -51.93 -0.33 1.17 16 16 C -0.15 -2.11 6.22 -24.73 -0.15 -2.26 16 17 C -0.12 -1.33 6.83 -25.07 -0.17 -1.50 16 18 C -0.15 -1.58 6.61 -25.61 -0.17 -1.75 16 19 C 0.10 1.40 4.02 -25.61 -0.10 1.29 16 20 H 0.07 0.94 8.07 -51.93 -0.42 0.52 16 21 O -0.56 -7.65 13.22 -35.23 -0.47 -8.12 16 22 C -0.13 -3.14 9.92 -39.83 -0.40 -3.54 16 23 C -0.12 -3.29 8.60 -39.25 -0.34 -3.63 16 24 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 25 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 26 H 0.10 1.97 5.23 -52.49 -0.27 1.69 16 27 H 0.08 1.19 7.18 -51.93 -0.37 0.81 16 28 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.67 7.96 -51.93 -0.41 0.26 16 33 H 0.37 3.08 9.11 45.56 0.42 3.49 16 34 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 35 H 0.13 3.55 6.18 -52.48 -0.32 3.23 16 LS Contribution 289.23 15.07 4.36 4.36 Total: -1.00 -30.05 289.23 -7.93 -37.98 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -3.81 Total: 8.50 kcal Atomic # 6 Polarization: -25.57 SS G_CDS: -3.40 Total: -28.98 kcal Atomic # 7 Polarization: -21.53 SS G_CDS: 0.60 Total: -20.93 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.65 Total: -15.09 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.05 -7.93 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037690282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.682 kcal (2) G-P(sol) polarization free energy of solvation -30.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds