Wall clock time and date at job start Mon Mar 30 2020 06:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30880 * 1 3 3 Si 1.86797 * 119.99631 * 2 1 4 4 H 1.48503 * 109.47047 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47205 * 299.99630 * 3 2 1 6 6 H 1.48499 * 109.47391 * 59.99757 * 3 2 1 7 7 C 1.39887 * 120.00043 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99692 * 186.75782 * 7 2 1 9 9 C 1.41215 * 120.00405 * 6.76012 * 7 2 1 10 10 C 1.40832 * 120.17971 * 210.33370 * 9 7 2 11 11 C 1.36436 * 119.80773 * 179.97438 * 10 9 7 12 12 C 1.39308 * 120.18804 * 359.97438 * 11 10 9 13 13 O 1.35675 * 119.81941 * 180.02562 * 12 11 10 14 14 C 1.42905 * 116.99809 * 354.08985 * 13 12 11 15 15 H 1.08997 * 110.43696 * 322.87549 * 14 13 12 16 16 C 1.54898 * 110.59696 * 85.48603 * 14 13 12 17 17 C 1.54886 * 102.74675 * 156.67749 * 16 14 13 18 18 C 1.54269 * 104.19736 * 322.05669 * 17 16 14 19 19 C 1.53876 * 106.59720 * 23.61223 * 18 17 16 20 20 H 1.09005 * 110.03079 * 240.71551 * 19 18 17 21 21 O 1.42894 * 110.07356 * 119.30675 * 19 18 17 22 22 C 1.39317 * 120.36474 * 0.27529 * 12 11 10 23 23 C 1.36439 * 120.18228 * 359.44212 * 22 12 11 24 24 H 0.97000 * 120.00561 * 0.02562 * 1 2 3 25 25 H 1.08001 * 120.09365 * 359.95131 * 10 9 7 26 26 H 1.08002 * 119.90132 * 180.02562 * 11 10 9 27 27 H 1.08994 * 110.75296 * 274.99209 * 16 14 13 28 28 H 1.08998 * 110.75402 * 38.35931 * 16 14 13 29 29 H 1.09002 * 110.48470 * 203.38172 * 17 16 14 30 30 H 1.08993 * 110.60207 * 80.79093 * 17 16 14 31 31 H 1.09007 * 110.03411 * 264.33141 * 18 17 16 32 32 H 1.08992 * 110.07397 * 142.91783 * 18 17 16 33 33 H 0.96701 * 114.00091 * 62.81245 * 21 19 18 34 34 H 1.07994 * 119.90484 * 179.70540 * 22 12 11 35 35 H 1.08003 * 120.09214 * 180.27316 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8839 2.3965 -1.2126 6 1 1.8839 2.3965 1.2124 7 6 2.0082 -1.2115 0.0005 8 1 3.0827 -1.2146 0.1106 9 6 1.3096 -2.4303 -0.1429 10 6 1.8036 -3.6044 0.4579 11 6 1.1222 -4.7777 0.3149 12 6 -0.0592 -4.8164 -0.4224 13 8 -0.7310 -5.9871 -0.5593 14 6 -0.1051 -7.1595 -0.0340 15 1 0.9726 -7.1188 -0.1918 16 6 -0.4265 -7.3202 1.4727 17 6 -0.2257 -8.8383 1.7050 18 6 -0.7754 -9.4935 0.4211 19 6 -0.6987 -8.4261 -0.6846 20 1 -1.6963 -8.2153 -1.0700 21 8 0.1495 -8.8761 -1.7428 22 6 -0.5518 -3.6605 -1.0242 23 6 0.1144 -2.4778 -0.8861 24 1 -0.4851 0.8400 -0.0004 25 1 2.7193 -3.5760 1.0299 26 1 1.4994 -5.6789 0.7753 27 1 0.2692 -6.7411 2.0799 28 1 -1.4564 -7.0303 1.6810 29 1 -0.7928 -9.1693 2.5751 30 1 0.8319 -9.0707 1.8291 31 1 -1.8103 -9.8007 0.5722 32 1 -0.1659 -10.3556 0.1506 33 1 -0.1700 -9.6705 -2.1922 34 1 -1.4658 -3.6999 -1.5981 35 1 -0.2713 -1.5818 -1.3496 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037690282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:57 Heat of formation + Delta-G solvation = -98.948700 kcal Electronic energy + Delta-G solvation = -17693.756012 eV Core-core repulsion = 14848.348082 eV Total energy + Delta-G solvation = -2845.407930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.02697 -39.30550 -37.71631 -35.80654 -35.08164 -31.74332 -30.95166 -29.06161 -28.50874 -26.59540 -23.36422 -22.65023 -21.81628 -21.12960 -19.35080 -19.06358 -17.78448 -17.04944 -16.93160 -16.24673 -15.92709 -15.66780 -15.14472 -14.81016 -14.31056 -14.04937 -13.87798 -13.58071 -13.43241 -13.38301 -13.08510 -12.80100 -12.51119 -12.31087 -12.11057 -11.76928 -11.62520 -11.60937 -11.38890 -11.11303 -10.96311 -10.86833 -9.57731 -8.84557 -8.52737 -6.27319 0.92642 1.01126 1.40379 1.50419 1.55366 2.24750 2.45392 2.76704 3.26719 3.50915 3.67545 3.82770 3.93816 4.20050 4.27360 4.32679 4.35952 4.44423 4.55016 4.70466 4.80430 4.93142 4.98821 5.06134 5.12225 5.14777 5.21954 5.30506 5.33841 5.59196 5.65438 5.87050 6.05938 6.26474 6.57205 6.79772 6.88946 6.96809 7.07799 8.43848 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.052165 B = 0.004587 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.634012 B = 6102.744927 C = 6230.742125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.074 0.926 9 C 0.051 3.949 10 C -0.200 4.200 11 C -0.169 4.169 12 C 0.011 3.989 13 O -0.329 6.329 14 C 0.076 3.924 15 H 0.065 0.935 16 C -0.145 4.145 17 C -0.114 4.114 18 C -0.141 4.141 19 C 0.104 3.896 20 H 0.068 0.932 21 O -0.583 6.583 22 C -0.139 4.139 23 C -0.141 4.141 24 H 0.285 0.715 25 H 0.106 0.894 26 H 0.124 0.876 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.398 0.602 34 H 0.110 0.890 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -14.744 1.550 14.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.183 4.183 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.192 1.192 7 C -0.530 4.530 8 H 0.093 0.907 9 C 0.049 3.951 10 C -0.219 4.219 11 C -0.188 4.188 12 C -0.033 4.033 13 O -0.245 6.245 14 C 0.019 3.981 15 H 0.083 0.917 16 C -0.183 4.183 17 C -0.151 4.151 18 C -0.178 4.178 19 C 0.045 3.955 20 H 0.086 0.914 21 O -0.392 6.392 22 C -0.158 4.158 23 C -0.161 4.161 24 H 0.095 0.905 25 H 0.124 0.876 26 H 0.141 0.859 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.249 0.751 34 H 0.128 0.872 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.032 -14.124 1.646 14.364 hybrid contribution 0.085 0.551 -0.123 0.571 sum -1.947 -13.573 1.523 13.796 Atomic orbital electron populations 1.69857 1.08753 1.30010 1.38661 1.26728 0.95686 1.04381 0.91538 0.85077 0.79137 0.76167 0.78767 1.18263 1.19038 1.19225 1.19727 0.95174 0.91264 1.46799 0.90742 1.17977 0.93109 0.93361 0.90642 1.20886 1.02380 0.93508 1.05137 1.20710 0.96403 0.98434 1.03216 1.18713 0.94890 0.85596 1.04087 1.85829 1.46295 1.14079 1.78340 1.23265 0.97361 0.83470 0.93968 0.91708 1.22986 1.02629 0.98799 0.93877 1.22244 1.02214 0.92213 0.98465 1.22775 1.03513 0.97542 0.93993 1.22377 0.93147 0.91841 0.88113 0.91426 1.86523 1.51916 1.50268 1.50513 1.20067 1.01144 0.91397 1.03208 1.21023 0.98074 0.95951 1.01022 0.90462 0.87557 0.85878 0.91427 0.90599 0.88959 0.90803 0.88878 0.88807 0.75117 0.87230 0.86670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.74 10.73 21.82 0.23 -45.51 16 2 C 0.03 1.47 5.31 85.23 0.45 1.93 16 3 Si 0.99 39.54 29.56 68.60 2.03 41.57 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.27 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.50 -27.78 9.05 23.40 0.21 -27.57 16 8 H 0.07 3.99 7.85 -2.91 -0.02 3.96 16 9 C 0.05 2.88 5.55 -21.28 -0.12 2.76 16 10 C -0.20 -10.19 9.74 22.48 0.22 -9.97 16 11 C -0.17 -7.88 8.60 22.11 0.19 -7.69 16 12 C 0.01 0.52 6.65 22.79 0.15 0.68 16 13 O -0.33 -13.91 9.85 -89.93 -0.89 -14.79 16 14 C 0.08 2.52 2.42 31.67 0.08 2.59 16 15 H 0.06 2.35 6.45 -2.39 -0.02 2.33 16 16 C -0.15 -3.96 6.22 31.89 0.20 -3.76 16 17 C -0.11 -2.13 6.83 31.67 0.22 -1.92 16 18 C -0.14 -2.37 6.61 31.32 0.21 -2.16 16 19 C 0.10 2.62 4.02 31.32 0.13 2.74 16 20 H 0.07 1.71 8.07 -2.38 -0.02 1.69 16 21 O -0.58 -14.67 13.22 -148.98 -1.97 -16.64 16 22 C -0.14 -7.10 9.92 22.11 0.22 -6.88 16 23 C -0.14 -7.83 8.60 22.48 0.19 -7.64 16 24 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 25 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 26 H 0.12 4.97 5.23 -2.91 -0.02 4.95 16 27 H 0.07 1.96 7.18 -2.39 -0.02 1.94 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.09 1.27 7.96 -2.39 -0.02 1.25 16 33 H 0.40 5.48 9.11 -74.06 -0.67 4.80 16 34 H 0.11 5.14 8.06 -2.91 -0.02 5.12 16 35 H 0.12 6.62 6.18 -2.91 -0.02 6.60 16 Total: -1.00 -66.11 289.23 2.18 -63.93 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: 0.43 Total: 28.34 kcal Atomic # 6 Polarization: -59.24 SS G_CDS: 2.34 Total: -56.90 kcal Atomic # 7 Polarization: -45.74 SS G_CDS: 0.23 Total: -45.51 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -2.86 Total: -31.43 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -66.11 2.18 -63.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037690282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.016 kcal (2) G-P(sol) polarization free energy of solvation -66.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds