Wall clock time and date at job start Mon Mar 30 2020 06:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86805 * 120.00107 * 2 1 4 4 H 1.48495 * 109.47042 * 270.00002 * 3 2 1 5 5 H 1.48501 * 109.47127 * 149.99944 * 3 2 1 6 6 H 1.48497 * 109.46868 * 29.99623 * 3 2 1 7 7 C 1.39894 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00262 * 201.35995 * 7 2 1 9 9 C 1.41217 * 120.00027 * 21.35909 * 7 2 1 10 10 C 1.40827 * 120.18058 * 211.32314 * 9 7 2 11 11 C 1.36445 * 119.81196 * 179.71513 * 10 9 7 12 12 C 1.39310 * 120.18077 * 0.57517 * 11 10 9 13 13 O 1.35670 * 119.81543 * 179.69053 * 12 11 10 14 14 C 1.42907 * 117.00074 * 6.17466 * 13 12 11 15 15 H 1.09003 * 110.01444 * 24.29494 * 14 13 12 16 16 C 1.54264 * 110.02859 * 262.85633 * 14 13 12 17 17 C 1.54893 * 104.19200 * 217.10481 * 16 14 13 18 18 C 1.54889 * 102.75144 * 37.94449 * 17 16 14 19 19 C 1.53867 * 110.03215 * 145.68912 * 14 13 12 20 20 H 1.09005 * 110.03703 * 359.95047 * 19 14 13 21 21 O 1.42907 * 110.03103 * 238.56919 * 19 14 13 22 22 C 1.39316 * 120.36666 * 359.67672 * 12 11 10 23 23 C 1.36434 * 120.18560 * 0.04113 * 22 12 11 24 24 H 0.97004 * 119.99659 * 183.94752 * 1 2 3 25 25 H 1.08008 * 120.09611 * 359.97438 * 10 9 7 26 26 H 1.08003 * 119.90669 * 180.25010 * 11 10 9 27 27 H 1.08997 * 110.48805 * 335.77643 * 16 14 13 28 28 H 1.08997 * 110.48915 * 98.42558 * 16 14 13 29 29 H 1.09005 * 110.75451 * 279.62594 * 17 16 14 30 30 H 1.08998 * 110.91656 * 156.33454 * 17 16 14 31 31 H 1.09000 * 110.48338 * 203.38647 * 18 17 16 32 32 H 1.08997 * 110.48773 * 80.73486 * 18 17 16 33 33 H 0.96698 * 113.99894 * 180.02562 * 21 19 14 34 34 H 1.08005 * 119.90383 * 180.02562 * 22 12 11 35 35 H 1.08003 * 120.09359 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 3.5404 1.4402 0.7001 6 1 1.4403 2.6527 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0326 -1.2435 0.3412 9 6 1.3750 -2.3927 -0.4443 10 6 1.7276 -3.6376 0.1117 11 6 1.1068 -4.7734 -0.3197 12 6 0.1351 -4.7054 -1.3157 13 8 -0.4730 -5.8403 -1.7434 14 6 -0.1682 -7.0451 -1.0380 15 1 0.1615 -6.8115 -0.0256 16 6 0.9297 -7.8309 -1.7842 17 6 0.5254 -9.3150 -1.6013 18 6 -1.0187 -9.2647 -1.7117 19 6 -1.4069 -7.9567 -0.9919 20 1 -2.2410 -7.4797 -1.5068 21 8 -1.7623 -8.2313 0.3648 22 6 -0.2157 -3.4785 -1.8747 23 6 0.3914 -2.3327 -1.4505 24 1 -0.4850 -0.8381 0.0578 25 1 2.4844 -3.6926 0.8804 26 1 1.3731 -5.7285 0.1086 27 1 0.9374 -7.5652 -2.8413 28 1 1.9051 -7.6432 -1.3356 29 1 0.8310 -9.6806 -0.6209 30 1 0.9493 -9.9340 -2.3920 31 1 -1.4651 -10.1232 -1.2098 32 1 -1.3256 -9.2305 -2.7570 33 1 -2.5368 -8.8024 0.4606 34 1 -0.9703 -3.4344 -2.6461 35 1 0.1180 -1.3823 -1.8847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037690283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:01 Heat of formation + Delta-G solvation = -84.454269 kcal Electronic energy + Delta-G solvation = -17725.428293 eV Core-core repulsion = 14880.648888 eV Total energy + Delta-G solvation = -2844.779405 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.66050 -37.96548 -36.31269 -34.62390 -33.30893 -30.01495 -28.82404 -28.01199 -27.39555 -24.59820 -21.73491 -21.06743 -20.92946 -19.62699 -17.93876 -17.72435 -16.43907 -15.91428 -15.38226 -14.56398 -14.40875 -13.95770 -13.80903 -13.34031 -13.06146 -12.66707 -12.53386 -12.27687 -12.13267 -11.66704 -11.33384 -11.15902 -11.12408 -11.00519 -10.69977 -10.42800 -10.38961 -10.00695 -9.90349 -9.54117 -9.40779 -8.89686 -7.86012 -7.18458 -7.00567 -4.31615 2.74554 2.76758 3.20592 3.29173 3.39200 3.69288 4.09076 4.38409 4.51103 4.64741 4.78770 4.90807 5.29147 5.42198 5.45835 5.50393 5.56034 5.72777 5.78647 5.86425 5.88627 6.01396 6.06631 6.15701 6.27674 6.60150 6.80893 6.94814 7.24546 7.39655 7.60370 7.63813 7.77620 7.85857 8.12198 8.23015 8.46799 8.80623 8.96503 10.19304 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.052848 B = 0.004592 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.690986 B = 6096.313166 C = 6209.684558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.036 3.964 3 Si 1.071 2.929 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.073 0.927 9 C 0.077 3.923 10 C -0.192 4.192 11 C -0.157 4.157 12 C -0.012 4.012 13 O -0.319 6.319 14 C 0.087 3.913 15 H 0.087 0.913 16 C -0.139 4.139 17 C -0.120 4.120 18 C -0.151 4.151 19 C 0.098 3.902 20 H 0.070 0.930 21 O -0.562 6.562 22 C -0.104 4.104 23 C -0.182 4.182 24 H 0.296 0.704 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.377 0.623 34 H 0.099 0.901 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 -13.422 -2.464 13.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.184 4.184 3 Si 0.895 3.105 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.092 0.908 9 C 0.074 3.926 10 C -0.212 4.212 11 C -0.176 4.176 12 C -0.055 4.055 13 O -0.234 6.234 14 C 0.029 3.971 15 H 0.105 0.895 16 C -0.177 4.177 17 C -0.157 4.157 18 C -0.189 4.189 19 C 0.039 3.961 20 H 0.088 0.912 21 O -0.368 6.368 22 C -0.123 4.123 23 C -0.201 4.201 24 H 0.110 0.890 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.098 0.902 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.224 0.776 34 H 0.118 0.882 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.351 -11.386 -2.533 11.742 hybrid contribution -0.184 -2.175 0.108 2.185 sum -1.535 -13.561 -2.425 13.861 Atomic orbital electron populations 1.70462 1.08020 1.33942 1.31329 1.26929 0.95794 1.04074 0.91572 0.83544 0.75266 0.73692 0.77951 1.20168 1.20360 1.20297 1.20419 1.01134 0.93375 1.41118 0.90846 1.17688 0.91679 0.92885 0.90304 1.20633 1.04771 0.92730 1.03036 1.20522 0.99377 0.98051 0.99646 1.18518 0.99807 0.85103 1.02072 1.85860 1.67619 1.14214 1.55756 1.22636 0.92836 0.84209 0.97370 0.89493 1.22803 0.98527 0.94452 1.01875 1.22398 0.95081 0.96361 1.01889 1.23015 0.97273 0.97459 1.01169 1.22414 0.97285 0.94033 0.82373 0.91240 1.86536 1.51688 1.72588 1.25989 1.19748 1.01221 0.90161 1.01204 1.20785 1.02910 0.96398 1.00027 0.88997 0.88499 0.88263 0.90246 0.90915 0.91195 0.91302 0.91015 0.90590 0.77637 0.88243 0.87089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.27 12.54 55.55 0.70 -21.57 16 2 C 0.04 0.93 4.99 -17.34 -0.09 0.85 16 3 Si 1.07 22.21 29.98 -169.99 -5.10 17.11 16 4 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.53 -14.44 8.98 -37.83 -0.34 -14.78 16 8 H 0.07 1.95 7.93 -52.49 -0.42 1.53 16 9 C 0.08 2.08 5.20 -106.80 -0.56 1.53 16 10 C -0.19 -4.82 9.74 -39.25 -0.38 -5.20 16 11 C -0.16 -3.63 8.90 -39.83 -0.35 -3.99 16 12 C -0.01 -0.28 6.70 -38.78 -0.26 -0.54 16 13 O -0.32 -6.57 9.68 -18.71 -0.18 -6.75 16 14 C 0.09 1.47 2.69 -25.62 -0.07 1.40 16 15 H 0.09 1.61 5.50 -51.93 -0.29 1.33 16 16 C -0.14 -1.96 6.56 -25.07 -0.16 -2.12 16 17 C -0.12 -1.32 6.91 -24.74 -0.17 -1.49 16 18 C -0.15 -1.59 6.56 -25.07 -0.16 -1.76 16 19 C 0.10 1.35 4.07 -25.61 -0.10 1.24 16 20 H 0.07 0.98 7.96 -51.93 -0.41 0.57 16 21 O -0.56 -7.55 13.21 -35.23 -0.47 -8.01 16 22 C -0.10 -2.52 9.92 -39.83 -0.40 -2.92 16 23 C -0.18 -4.74 7.82 -39.25 -0.31 -5.05 16 24 H 0.30 8.36 6.53 -40.82 -0.27 8.09 16 25 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 26 H 0.10 2.04 5.88 -52.48 -0.31 1.73 16 27 H 0.08 1.15 8.08 -51.93 -0.42 0.73 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.61 8.06 -51.93 -0.42 0.20 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.38 3.08 9.10 45.56 0.41 3.49 16 34 H 0.10 2.19 8.06 -52.48 -0.42 1.77 16 35 H 0.11 2.95 6.80 -52.48 -0.36 2.59 16 LS Contribution 290.29 15.07 4.37 4.37 Total: -1.00 -29.96 290.29 -7.83 -37.79 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -3.80 Total: 9.89 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: -3.35 Total: -32.83 kcal Atomic # 7 Polarization: -22.27 SS G_CDS: 0.70 Total: -21.57 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.65 Total: -14.76 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.10 Total: 17.11 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -29.96 -7.83 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037690283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.665 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds