Wall clock time and date at job start Mon Mar 30 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86805 * 120.00107 * 2 1 4 4 H 1.48495 * 109.47042 * 270.00002 * 3 2 1 5 5 H 1.48501 * 109.47127 * 149.99944 * 3 2 1 6 6 H 1.48497 * 109.46868 * 29.99623 * 3 2 1 7 7 C 1.39894 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00262 * 201.35995 * 7 2 1 9 9 C 1.41217 * 120.00027 * 21.35909 * 7 2 1 10 10 C 1.40827 * 120.18058 * 211.32314 * 9 7 2 11 11 C 1.36445 * 119.81196 * 179.71513 * 10 9 7 12 12 C 1.39310 * 120.18077 * 0.57517 * 11 10 9 13 13 O 1.35670 * 119.81543 * 179.69053 * 12 11 10 14 14 C 1.42907 * 117.00074 * 6.17466 * 13 12 11 15 15 H 1.09003 * 110.01444 * 24.29494 * 14 13 12 16 16 C 1.54264 * 110.02859 * 262.85633 * 14 13 12 17 17 C 1.54893 * 104.19200 * 217.10481 * 16 14 13 18 18 C 1.54889 * 102.75144 * 37.94449 * 17 16 14 19 19 C 1.53867 * 110.03215 * 145.68912 * 14 13 12 20 20 H 1.09005 * 110.03703 * 359.95047 * 19 14 13 21 21 O 1.42907 * 110.03103 * 238.56919 * 19 14 13 22 22 C 1.39316 * 120.36666 * 359.67672 * 12 11 10 23 23 C 1.36434 * 120.18560 * 0.04113 * 22 12 11 24 24 H 0.97004 * 119.99659 * 183.94752 * 1 2 3 25 25 H 1.08008 * 120.09611 * 359.97438 * 10 9 7 26 26 H 1.08003 * 119.90669 * 180.25010 * 11 10 9 27 27 H 1.08997 * 110.48805 * 335.77643 * 16 14 13 28 28 H 1.08997 * 110.48915 * 98.42558 * 16 14 13 29 29 H 1.09005 * 110.75451 * 279.62594 * 17 16 14 30 30 H 1.08998 * 110.91656 * 156.33454 * 17 16 14 31 31 H 1.09000 * 110.48338 * 203.38647 * 18 17 16 32 32 H 1.08997 * 110.48773 * 80.73486 * 18 17 16 33 33 H 0.96698 * 113.99894 * 180.02562 * 21 19 14 34 34 H 1.08005 * 119.90383 * 180.02562 * 22 12 11 35 35 H 1.08003 * 120.09359 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0464 -1.4000 5 1 3.5404 1.4402 0.7001 6 1 1.4403 2.6527 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0326 -1.2435 0.3412 9 6 1.3750 -2.3927 -0.4443 10 6 1.7276 -3.6376 0.1117 11 6 1.1068 -4.7734 -0.3197 12 6 0.1351 -4.7054 -1.3157 13 8 -0.4730 -5.8403 -1.7434 14 6 -0.1682 -7.0451 -1.0380 15 1 0.1615 -6.8115 -0.0256 16 6 0.9297 -7.8309 -1.7842 17 6 0.5254 -9.3150 -1.6013 18 6 -1.0187 -9.2647 -1.7117 19 6 -1.4069 -7.9567 -0.9919 20 1 -2.2410 -7.4797 -1.5068 21 8 -1.7623 -8.2313 0.3648 22 6 -0.2157 -3.4785 -1.8747 23 6 0.3914 -2.3327 -1.4505 24 1 -0.4850 -0.8381 0.0578 25 1 2.4844 -3.6926 0.8804 26 1 1.3731 -5.7285 0.1086 27 1 0.9374 -7.5652 -2.8413 28 1 1.9051 -7.6432 -1.3356 29 1 0.8310 -9.6806 -0.6209 30 1 0.9493 -9.9340 -2.3920 31 1 -1.4651 -10.1232 -1.2098 32 1 -1.3256 -9.2305 -2.7570 33 1 -2.5368 -8.8024 0.4606 34 1 -0.9703 -3.4344 -2.6461 35 1 0.1180 -1.3823 -1.8847 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037690283.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:00 Heat of formation + Delta-G solvation = -103.535900 kcal Electronic energy + Delta-G solvation = -17726.255735 eV Core-core repulsion = 14880.648888 eV Total energy + Delta-G solvation = -2845.606846 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.15408 -39.49745 -37.91967 -35.77678 -35.16244 -31.92257 -30.73733 -29.13347 -28.59233 -26.52675 -23.49361 -22.85739 -21.97306 -21.05292 -19.85667 -19.25056 -17.64006 -17.26417 -16.44975 -16.38399 -16.10598 -15.63603 -15.37488 -14.91329 -14.66735 -14.27266 -13.96788 -13.61854 -13.40621 -13.26881 -13.06776 -12.85567 -12.63802 -12.10155 -11.97011 -11.84383 -11.69335 -11.48546 -11.39233 -11.25056 -10.93942 -10.82106 -9.83263 -9.20591 -8.97760 -6.38368 0.76692 0.82441 1.52161 1.63974 1.80446 2.29765 2.37051 2.68585 3.30461 3.43189 3.52319 3.75283 3.86677 4.09660 4.16922 4.24837 4.31231 4.41302 4.56537 4.64421 4.70249 4.78039 4.89423 4.96826 4.99091 5.07373 5.10539 5.30569 5.34255 5.43371 5.64782 5.75220 5.80452 6.12476 6.21569 6.58189 6.83736 6.86077 6.97392 8.12424 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.052848 B = 0.004592 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.690986 B = 6096.313166 C = 6209.684558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.000 4.000 3 Si 1.123 2.877 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.273 1.273 7 C -0.564 4.564 8 H 0.071 0.929 9 C 0.046 3.954 10 C -0.201 4.201 11 C -0.158 4.158 12 C 0.003 3.997 13 O -0.325 6.325 14 C 0.070 3.930 15 H 0.068 0.932 16 C -0.139 4.139 17 C -0.113 4.113 18 C -0.141 4.141 19 C 0.099 3.901 20 H 0.063 0.937 21 O -0.581 6.581 22 C -0.117 4.117 23 C -0.191 4.191 24 H 0.279 0.721 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.399 0.601 34 H 0.118 0.882 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -15.354 -2.867 15.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.214 4.214 3 Si 0.941 3.059 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.197 1.197 7 C -0.594 4.594 8 H 0.089 0.911 9 C 0.044 3.956 10 C -0.221 4.221 11 C -0.176 4.176 12 C -0.041 4.041 13 O -0.241 6.241 14 C 0.014 3.986 15 H 0.086 0.914 16 C -0.177 4.177 17 C -0.150 4.150 18 C -0.178 4.178 19 C 0.040 3.960 20 H 0.081 0.919 21 O -0.390 6.390 22 C -0.135 4.135 23 C -0.210 4.210 24 H 0.091 0.909 25 H 0.123 0.877 26 H 0.143 0.857 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.250 0.750 34 H 0.136 0.864 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.269 -13.374 -2.936 13.751 hybrid contribution -0.287 -1.818 0.231 1.855 sum -1.556 -15.192 -2.705 15.510 Atomic orbital electron populations 1.70590 1.08800 1.32741 1.33867 1.28401 0.95772 1.07343 0.89864 0.82918 0.74618 0.69611 0.78801 1.18844 1.18615 1.19744 1.20623 1.01307 0.94478 1.42974 0.91117 1.18009 0.92635 0.93838 0.91142 1.20843 1.05142 0.92828 1.03267 1.20771 0.98832 0.98629 0.99392 1.18637 0.98770 0.85924 1.00724 1.85858 1.67294 1.14587 1.56329 1.23095 0.95786 0.83370 0.96367 0.91428 1.22804 0.97368 0.96455 1.01049 1.22408 0.95484 0.94079 1.03034 1.22988 0.96864 0.96318 1.01638 1.22358 0.95577 0.95101 0.82978 0.91861 1.86478 1.53224 1.73535 1.25776 1.19956 1.01604 0.90159 1.01819 1.20726 1.03397 0.96563 1.00321 0.90865 0.87700 0.85671 0.90620 0.91272 0.90809 0.88949 0.88317 0.89487 0.74968 0.86431 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.13 12.54 21.82 0.27 -46.86 16 2 C 0.00 -0.02 4.99 85.24 0.43 0.40 16 3 Si 1.12 44.83 29.98 68.60 2.06 46.88 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 5 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 7 C -0.56 -31.57 8.98 23.40 0.21 -31.36 16 8 H 0.07 3.85 7.93 -2.91 -0.02 3.83 16 9 C 0.05 2.56 5.20 -21.28 -0.11 2.45 16 10 C -0.20 -10.24 9.74 22.48 0.22 -10.02 16 11 C -0.16 -7.25 8.90 22.11 0.20 -7.05 16 12 C 0.00 0.15 6.70 22.79 0.15 0.30 16 13 O -0.32 -13.08 9.68 -89.87 -0.87 -13.95 16 14 C 0.07 2.28 2.69 31.31 0.08 2.36 16 15 H 0.07 2.44 5.50 -2.39 -0.01 2.43 16 16 C -0.14 -3.63 6.56 31.67 0.21 -3.42 16 17 C -0.11 -2.07 6.91 31.89 0.22 -1.85 16 18 C -0.14 -2.41 6.56 31.67 0.21 -2.20 16 19 C 0.10 2.49 4.07 31.32 0.13 2.62 16 20 H 0.06 1.66 7.96 -2.38 -0.02 1.64 16 21 O -0.58 -14.23 13.21 -148.98 -1.97 -16.20 16 22 C -0.12 -5.69 9.92 22.11 0.22 -5.47 16 23 C -0.19 -10.25 7.82 22.48 0.18 -10.07 16 24 H 0.28 16.46 6.53 -92.71 -0.61 15.86 16 25 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 26 H 0.13 5.03 5.88 -2.91 -0.02 5.01 16 27 H 0.08 2.04 8.08 -2.39 -0.02 2.02 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.10 1.21 8.06 -2.39 -0.02 1.19 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.40 5.38 9.10 -74.06 -0.67 4.71 16 34 H 0.12 5.19 8.06 -2.91 -0.02 5.16 16 35 H 0.10 5.40 6.80 -2.91 -0.02 5.38 16 Total: -1.00 -65.91 290.29 2.41 -63.50 By element: Atomic # 1 Polarization: 29.38 SS G_CDS: 0.59 Total: 29.97 kcal Atomic # 6 Polarization: -65.67 SS G_CDS: 2.34 Total: -63.33 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.27 Total: -46.86 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -2.84 Total: -30.16 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.06 Total: 46.88 kcal Total: -65.91 2.41 -63.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037690283.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.040 kcal (2) G-P(sol) polarization free energy of solvation -65.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds