Wall clock time and date at job start Mon Mar 30 2020 06:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47445 * 270.23259 * 3 2 1 5 5 H 1.48501 * 109.47415 * 30.23858 * 3 2 1 6 6 H 1.48505 * 109.47031 * 150.23384 * 3 2 1 7 7 C 1.39892 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99696 * 345.16520 * 7 2 1 9 9 C 1.41217 * 120.00165 * 165.16666 * 7 2 1 10 10 C 1.40830 * 120.17529 * 328.75252 * 9 7 2 11 11 C 1.36437 * 119.80474 * 179.72322 * 10 9 7 12 12 C 1.39310 * 120.18953 * 0.27909 * 11 10 9 13 13 O 1.35672 * 119.81844 * 179.97438 * 12 11 10 14 14 C 1.42898 * 117.00066 * 354.79039 * 13 12 11 15 15 H 1.08997 * 110.43304 * 327.88275 * 14 13 12 16 16 C 1.54888 * 110.48812 * 90.56726 * 14 13 12 17 17 C 1.54890 * 102.74709 * 156.62028 * 16 14 13 18 18 C 1.54264 * 104.19757 * 322.05784 * 17 16 14 19 19 C 1.53871 * 106.59740 * 23.61012 * 18 17 16 20 20 H 1.09004 * 110.07332 * 119.31328 * 19 18 17 21 21 O 1.42902 * 110.03222 * 240.71432 * 19 18 17 22 22 C 1.39313 * 120.36106 * 0.02562 * 12 11 10 23 23 C 1.36433 * 120.18748 * 359.97438 * 22 12 11 24 24 H 0.96998 * 119.99872 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.09850 * 359.97438 * 10 9 7 26 26 H 1.08005 * 119.90259 * 180.25474 * 11 10 9 27 27 H 1.09000 * 110.75704 * 274.93609 * 16 14 13 28 28 H 1.08994 * 110.75853 * 38.30931 * 16 14 13 29 29 H 1.09006 * 110.48601 * 203.37902 * 17 16 14 30 30 H 1.09007 * 110.60186 * 80.79466 * 17 16 14 31 31 H 1.09005 * 110.03430 * 264.32512 * 18 17 16 32 32 H 1.08999 * 110.03299 * 142.89744 * 18 17 16 33 33 H 0.96699 * 114.00210 * 297.17176 * 21 19 18 34 34 H 1.08006 * 119.90551 * 180.02562 * 22 12 11 35 35 H 1.07998 * 120.09319 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4854 2.0493 -1.4001 5 1 1.4428 2.6512 0.7051 6 1 3.5429 1.4387 0.6951 7 6 2.0083 -1.2115 -0.0005 8 1 1.4953 -2.1313 0.2385 9 6 3.3852 -1.2317 -0.3136 10 6 3.9204 -0.2902 -1.2139 11 6 5.2528 -0.3131 -1.5067 12 6 6.0821 -1.2679 -0.9223 13 8 7.4058 -1.2841 -1.2192 14 6 7.8572 -0.3708 -2.2213 15 1 7.0790 -0.2092 -2.9672 16 6 8.2832 0.9724 -1.5784 17 6 9.2613 1.5582 -2.6269 18 6 10.0375 0.3309 -3.1474 19 6 9.1448 -0.8956 -2.8895 20 1 8.9029 -1.3870 -3.8319 21 8 9.8107 -1.8111 -2.0174 22 6 5.5594 -2.2067 -0.0357 23 6 4.2293 -2.1976 0.2678 24 1 -0.4850 0.8400 -0.0004 25 1 3.2787 0.4503 -1.6681 26 1 5.6656 0.4108 -2.1937 27 1 7.4221 1.6272 -1.4452 28 1 8.7911 0.8024 -0.6291 29 1 9.9417 2.2694 -2.1585 30 1 8.7124 2.0350 -3.4391 31 1 10.9788 0.2278 -2.6073 32 1 10.2289 0.4355 -4.2153 33 1 10.6288 -2.1765 -2.3812 34 1 6.2092 -2.9434 0.4134 35 1 3.8258 -2.9258 0.9556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037690284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:03 Heat of formation + Delta-G solvation = -74.147701 kcal Electronic energy + Delta-G solvation = -17921.058274 eV Core-core repulsion = 15076.725795 eV Total energy + Delta-G solvation = -2844.332478 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.65555 -37.97897 -36.13663 -34.66070 -33.25451 -30.14002 -29.71234 -28.04450 -27.51214 -24.54235 -21.94707 -21.11698 -20.74134 -19.63927 -18.01395 -17.39846 -16.59310 -16.05707 -15.14152 -14.79200 -14.47976 -14.10270 -13.74053 -13.70775 -13.06782 -12.62245 -12.55920 -12.47908 -12.14339 -11.72705 -11.60955 -11.24747 -11.05865 -10.80082 -10.75068 -10.54197 -10.21470 -10.03532 -9.94702 -9.76909 -9.45663 -8.99604 -7.88449 -7.11719 -6.85306 -4.34450 2.57747 2.66745 3.12034 3.23096 3.34198 3.88511 4.02348 4.24885 4.47676 4.52209 4.59569 4.94072 5.18991 5.28490 5.36501 5.42821 5.52495 5.67904 5.70422 5.84273 5.88418 5.92670 6.01174 6.17919 6.26369 6.47496 6.67651 6.82946 7.03149 7.21408 7.47113 7.57068 7.68018 7.83576 7.99329 8.35959 8.46963 8.74066 8.87645 10.18359 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.035318 B = 0.005986 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.607593 B = 4676.402546 C = 5270.355761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.082 3.918 3 Si 0.911 3.089 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.247 1.247 7 C -0.451 4.451 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.210 4.210 11 C -0.157 4.157 12 C -0.005 4.005 13 O -0.296 6.296 14 C 0.091 3.909 15 H 0.083 0.917 16 C -0.147 4.147 17 C -0.121 4.121 18 C -0.156 4.156 19 C 0.104 3.896 20 H 0.060 0.940 21 O -0.542 6.542 22 C -0.103 4.103 23 C -0.175 4.175 24 H 0.283 0.717 25 H 0.105 0.895 26 H 0.100 0.900 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.368 0.632 34 H 0.104 0.896 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.029 2.928 -6.130 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.134 4.134 3 Si 0.739 3.261 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.170 1.170 7 C -0.480 4.480 8 H 0.108 0.892 9 C 0.067 3.933 10 C -0.230 4.230 11 C -0.176 4.176 12 C -0.048 4.048 13 O -0.211 6.211 14 C 0.034 3.966 15 H 0.100 0.900 16 C -0.184 4.184 17 C -0.159 4.159 18 C -0.194 4.194 19 C 0.045 3.955 20 H 0.078 0.922 21 O -0.346 6.346 22 C -0.122 4.122 23 C -0.194 4.194 24 H 0.093 0.907 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.214 0.786 34 H 0.122 0.878 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 15.377 3.036 -5.635 16.656 hybrid contribution 0.540 0.936 -0.639 1.255 sum 15.917 3.972 -6.274 17.564 Atomic orbital electron populations 1.69698 1.07886 1.29905 1.37027 1.26084 0.94728 1.01402 0.91234 0.86362 0.80804 0.80062 0.78901 1.19826 1.22034 1.17049 1.19364 0.91955 0.95729 1.40956 0.89245 1.17740 0.93552 0.91556 0.90468 1.20716 0.94525 1.04269 1.03447 1.20517 0.94918 0.99518 1.02620 1.18663 0.82082 1.00189 1.03893 1.86055 1.21996 1.57948 1.55055 1.23112 0.93708 0.89032 0.90791 0.89959 1.23032 0.99503 0.96439 0.99451 1.22213 0.98120 0.96922 0.98631 1.22919 0.99468 0.95662 1.01308 1.22560 0.91482 0.89158 0.92312 0.92201 1.86753 1.40873 1.62163 1.44783 1.19777 0.95215 0.98044 0.99118 1.20687 0.91954 1.03296 1.03506 0.90682 0.87778 0.88211 0.90899 0.90130 0.91254 0.91376 0.90531 0.91231 0.78629 0.87795 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.38 13.93 55.55 0.77 -21.60 16 2 C 0.08 2.21 5.44 -17.34 -0.09 2.12 16 3 Si 0.91 21.35 24.48 -169.99 -4.16 17.19 16 4 H -0.27 -6.14 6.51 56.52 0.37 -5.77 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.25 -5.96 6.95 56.52 0.39 -5.56 16 7 C -0.45 -12.45 9.57 -37.83 -0.36 -12.81 16 8 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 9 C 0.07 1.81 5.10 -106.81 -0.55 1.26 16 10 C -0.21 -5.18 7.12 -39.25 -0.28 -5.46 16 11 C -0.16 -3.50 8.83 -39.83 -0.35 -3.85 16 12 C 0.00 -0.11 6.70 -38.78 -0.26 -0.37 16 13 O -0.30 -6.01 9.13 -39.05 -0.36 -6.37 16 14 C 0.09 1.46 2.61 -25.07 -0.07 1.39 16 15 H 0.08 1.29 6.15 -51.93 -0.32 0.97 16 16 C -0.15 -2.08 6.44 -24.74 -0.16 -2.24 16 17 C -0.12 -1.28 6.83 -25.07 -0.17 -1.45 16 18 C -0.16 -1.51 6.61 -25.62 -0.17 -1.68 16 19 C 0.10 1.32 4.21 -25.62 -0.11 1.21 16 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 21 O -0.54 -7.37 12.52 -55.57 -0.70 -8.07 16 22 C -0.10 -2.32 9.92 -39.83 -0.40 -2.71 16 23 C -0.18 -4.18 9.74 -39.25 -0.38 -4.56 16 24 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 25 H 0.10 2.55 4.52 -52.49 -0.24 2.31 16 26 H 0.10 1.94 5.54 -52.48 -0.29 1.65 16 27 H 0.07 1.06 7.75 -51.93 -0.40 0.66 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.69 7.96 -51.93 -0.41 0.28 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.37 3.02 9.11 45.56 0.42 3.44 16 34 H 0.10 2.13 8.06 -52.48 -0.42 1.70 16 35 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 283.97 15.07 4.28 4.28 Total: -1.00 -30.48 283.97 -7.31 -37.79 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.81 Total: 5.93 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -3.34 Total: -29.14 kcal Atomic # 7 Polarization: -22.38 SS G_CDS: 0.77 Total: -21.60 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -1.05 Total: -14.44 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.16 Total: 17.19 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.48 -7.31 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037690284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.359 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds