Wall clock time and date at job start Mon Mar 30 2020 06:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86798 * 119.99945 * 2 1 4 4 H 1.48503 * 109.47445 * 270.23259 * 3 2 1 5 5 H 1.48501 * 109.47415 * 30.23858 * 3 2 1 6 6 H 1.48505 * 109.47031 * 150.23384 * 3 2 1 7 7 C 1.39892 * 120.00102 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99696 * 345.16520 * 7 2 1 9 9 C 1.41217 * 120.00165 * 165.16666 * 7 2 1 10 10 C 1.40830 * 120.17529 * 328.75252 * 9 7 2 11 11 C 1.36437 * 119.80474 * 179.72322 * 10 9 7 12 12 C 1.39310 * 120.18953 * 0.27909 * 11 10 9 13 13 O 1.35672 * 119.81844 * 179.97438 * 12 11 10 14 14 C 1.42898 * 117.00066 * 354.79039 * 13 12 11 15 15 H 1.08997 * 110.43304 * 327.88275 * 14 13 12 16 16 C 1.54888 * 110.48812 * 90.56726 * 14 13 12 17 17 C 1.54890 * 102.74709 * 156.62028 * 16 14 13 18 18 C 1.54264 * 104.19757 * 322.05784 * 17 16 14 19 19 C 1.53871 * 106.59740 * 23.61012 * 18 17 16 20 20 H 1.09004 * 110.07332 * 119.31328 * 19 18 17 21 21 O 1.42902 * 110.03222 * 240.71432 * 19 18 17 22 22 C 1.39313 * 120.36106 * 0.02562 * 12 11 10 23 23 C 1.36433 * 120.18748 * 359.97438 * 22 12 11 24 24 H 0.96998 * 119.99872 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.09850 * 359.97438 * 10 9 7 26 26 H 1.08005 * 119.90259 * 180.25474 * 11 10 9 27 27 H 1.09000 * 110.75704 * 274.93609 * 16 14 13 28 28 H 1.08994 * 110.75853 * 38.30931 * 16 14 13 29 29 H 1.09006 * 110.48601 * 203.37902 * 17 16 14 30 30 H 1.09007 * 110.60186 * 80.79466 * 17 16 14 31 31 H 1.09005 * 110.03430 * 264.32512 * 18 17 16 32 32 H 1.08999 * 110.03299 * 142.89744 * 18 17 16 33 33 H 0.96699 * 114.00210 * 297.17176 * 21 19 18 34 34 H 1.08006 * 119.90551 * 180.02562 * 22 12 11 35 35 H 1.07998 * 120.09319 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4854 2.0493 -1.4001 5 1 1.4428 2.6512 0.7051 6 1 3.5429 1.4387 0.6951 7 6 2.0083 -1.2115 -0.0005 8 1 1.4953 -2.1313 0.2385 9 6 3.3852 -1.2317 -0.3136 10 6 3.9204 -0.2902 -1.2139 11 6 5.2528 -0.3131 -1.5067 12 6 6.0821 -1.2679 -0.9223 13 8 7.4058 -1.2841 -1.2192 14 6 7.8572 -0.3708 -2.2213 15 1 7.0790 -0.2092 -2.9672 16 6 8.2832 0.9724 -1.5784 17 6 9.2613 1.5582 -2.6269 18 6 10.0375 0.3309 -3.1474 19 6 9.1448 -0.8956 -2.8895 20 1 8.9029 -1.3870 -3.8319 21 8 9.8107 -1.8111 -2.0174 22 6 5.5594 -2.2067 -0.0357 23 6 4.2293 -2.1976 0.2678 24 1 -0.4850 0.8400 -0.0004 25 1 3.2787 0.4503 -1.6681 26 1 5.6656 0.4108 -2.1937 27 1 7.4221 1.6272 -1.4452 28 1 8.7911 0.8024 -0.6291 29 1 9.9417 2.2694 -2.1585 30 1 8.7124 2.0350 -3.4391 31 1 10.9788 0.2278 -2.6073 32 1 10.2289 0.4355 -4.2153 33 1 10.6288 -2.1765 -2.3812 34 1 6.2092 -2.9434 0.4134 35 1 3.8258 -2.9258 0.9556 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037690284.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:03 Heat of formation + Delta-G solvation = -94.142270 kcal Electronic energy + Delta-G solvation = -17921.925303 eV Core-core repulsion = 15076.725795 eV Total energy + Delta-G solvation = -2845.199508 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07208 -39.42177 -37.68336 -35.69259 -35.18242 -31.96068 -31.58345 -29.09784 -28.58601 -26.41075 -23.68794 -22.75436 -21.71388 -20.97847 -19.43434 -19.34798 -17.88627 -17.40137 -16.73324 -16.05388 -15.84186 -15.68591 -15.27868 -14.99220 -14.71727 -14.43608 -14.31267 -13.72070 -13.51606 -13.33098 -12.94741 -12.63533 -12.33969 -12.23967 -12.14325 -11.96244 -11.92207 -11.53669 -11.36832 -11.22068 -10.84328 -10.82435 -9.73486 -8.98074 -8.84753 -6.39327 0.71813 0.77736 1.23678 1.37640 1.47277 2.12005 2.50201 2.60322 3.31854 3.44645 3.55782 3.62124 4.04577 4.09770 4.14596 4.26394 4.32049 4.43523 4.55481 4.64751 4.74880 4.80298 4.91752 4.97023 5.00886 5.08531 5.14042 5.23676 5.32429 5.36913 5.59784 5.71141 5.85780 6.11778 6.31566 6.60067 6.81183 6.91219 7.04111 8.24675 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.035318 B = 0.005986 C = 0.005311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.607593 B = 4676.402546 C = 5270.355761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.046 3.954 3 Si 0.963 3.037 4 H -0.255 1.255 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.485 4.485 8 H 0.056 0.944 9 C 0.045 3.955 10 C -0.215 4.215 11 C -0.161 4.161 12 C 0.015 3.985 13 O -0.308 6.308 14 C 0.069 3.931 15 H 0.085 0.915 16 C -0.148 4.148 17 C -0.115 4.115 18 C -0.145 4.145 19 C 0.104 3.896 20 H 0.074 0.926 21 O -0.570 6.570 22 C -0.113 4.113 23 C -0.178 4.178 24 H 0.292 0.708 25 H 0.105 0.895 26 H 0.131 0.869 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.391 0.609 34 H 0.125 0.875 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.171 4.338 -7.646 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.167 4.167 3 Si 0.788 3.212 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.515 4.515 8 H 0.075 0.925 9 C 0.042 3.958 10 C -0.234 4.234 11 C -0.179 4.179 12 C -0.030 4.030 13 O -0.222 6.222 14 C 0.013 3.987 15 H 0.103 0.897 16 C -0.186 4.186 17 C -0.153 4.153 18 C -0.183 4.183 19 C 0.045 3.955 20 H 0.092 0.908 21 O -0.378 6.378 22 C -0.132 4.132 23 C -0.197 4.197 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.149 0.851 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.115 0.885 33 H 0.240 0.760 34 H 0.143 0.857 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 18.546 4.438 -7.171 20.373 hybrid contribution -0.190 0.375 -0.207 0.469 sum 18.356 4.813 -7.378 20.360 Atomic orbital electron populations 1.69727 1.08943 1.31127 1.38944 1.26729 0.95358 1.03871 0.90738 0.85558 0.79095 0.76917 0.79673 1.18066 1.20430 1.18290 1.19345 0.93161 0.95222 1.43814 0.92547 1.17872 0.93166 0.93096 0.91624 1.20825 0.95589 1.03926 1.03098 1.20779 0.93994 1.00172 1.02970 1.18876 0.83201 0.98853 1.02038 1.86062 1.20374 1.59348 1.56460 1.23651 0.95452 0.89541 0.90106 0.89708 1.23014 1.00100 0.95617 0.99902 1.22235 0.97640 0.97528 0.97895 1.22877 0.98854 0.93419 1.03150 1.22628 0.90447 0.90505 0.91929 0.90782 1.86676 1.42458 1.62704 1.45946 1.20034 0.94913 0.98828 0.99386 1.20861 0.92581 1.02908 1.03393 0.89817 0.87733 0.85145 0.91728 0.91707 0.89818 0.89991 0.89650 0.88510 0.76003 0.85658 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -48.43 13.93 21.82 0.30 -48.12 16 2 C 0.05 2.52 5.44 85.23 0.46 2.98 16 3 Si 0.96 43.95 24.48 68.60 1.68 45.63 16 4 H -0.26 -10.85 6.51 99.48 0.65 -10.21 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -12.17 6.95 99.48 0.69 -11.48 16 7 C -0.48 -27.99 9.57 23.40 0.22 -27.76 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 9 C 0.04 2.36 5.10 -21.28 -0.11 2.25 16 10 C -0.22 -10.44 7.12 22.48 0.16 -10.28 16 11 C -0.16 -6.86 8.83 22.11 0.20 -6.66 16 12 C 0.01 0.63 6.70 22.79 0.15 0.78 16 13 O -0.31 -11.84 9.13 -70.44 -0.64 -12.48 16 14 C 0.07 2.01 2.61 31.67 0.08 2.10 16 15 H 0.09 2.40 6.15 -2.39 -0.01 2.38 16 16 C -0.15 -3.82 6.44 31.88 0.21 -3.61 16 17 C -0.12 -1.96 6.83 31.67 0.22 -1.74 16 18 C -0.15 -2.15 6.61 31.32 0.21 -1.94 16 19 C 0.10 2.26 4.21 31.32 0.13 2.39 16 20 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 21 O -0.57 -13.84 12.52 -129.54 -1.62 -15.47 16 22 C -0.11 -4.97 9.92 22.11 0.22 -4.75 16 23 C -0.18 -8.57 9.74 22.48 0.22 -8.35 16 24 H 0.29 14.78 8.30 -92.71 -0.77 14.01 16 25 H 0.11 5.01 4.52 -2.91 -0.01 5.00 16 26 H 0.13 4.69 5.54 -2.91 -0.02 4.68 16 27 H 0.06 1.73 7.75 -2.39 -0.02 1.71 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.08 1.15 7.96 -2.38 -0.02 1.13 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.39 5.17 9.11 -74.06 -0.67 4.50 16 34 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 35 H 0.12 5.23 8.06 -2.91 -0.02 5.21 16 Total: -1.00 -66.84 283.97 2.44 -64.40 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.35 Total: 20.66 kcal Atomic # 6 Polarization: -56.98 SS G_CDS: 2.37 Total: -54.62 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: 0.30 Total: -48.12 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -2.27 Total: -27.95 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.68 Total: 45.63 kcal Total: -66.84 2.44 -64.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037690284.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.738 kcal (2) G-P(sol) polarization free energy of solvation -66.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds