Wall clock time and date at job start Mon Mar 30 2020 06:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48505 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46894 * 299.99596 * 3 2 1 6 6 H 1.48500 * 109.47158 * 59.99614 * 3 2 1 7 7 C 1.39898 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00154 * 197.95628 * 7 2 1 9 9 C 1.41213 * 119.99496 * 17.95610 * 7 2 1 10 10 C 1.40832 * 120.17640 * 204.54759 * 9 7 2 11 11 C 1.36440 * 119.81004 * 179.97438 * 10 9 7 12 12 C 1.39315 * 120.18624 * 0.02562 * 11 10 9 13 13 O 1.35669 * 119.81631 * 180.02562 * 12 11 10 14 14 C 1.42899 * 116.99933 * 179.97438 * 13 12 11 15 15 H 1.09006 * 109.48881 * 54.96979 * 14 13 12 16 16 C 1.53085 * 109.48375 * 174.99821 * 14 13 12 17 17 C 1.53175 * 109.22004 * 177.56191 * 16 14 13 18 18 C 1.53191 * 109.02983 * 303.11416 * 17 16 14 19 19 C 1.53090 * 109.21114 * 56.88488 * 18 17 16 20 20 O 1.42902 * 109.41489 * 302.42207 * 19 18 17 21 21 C 1.39312 * 120.36264 * 0.27321 * 12 11 10 22 22 C 1.36437 * 120.18512 * 359.44429 * 21 12 11 23 23 H 0.97000 * 119.99520 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.09472 * 359.95252 * 10 9 7 25 25 H 1.08001 * 119.90710 * 179.97438 * 11 10 9 26 26 H 1.09004 * 109.52494 * 297.49914 * 16 14 13 27 27 H 1.09003 * 109.52629 * 57.62270 * 16 14 13 28 28 H 1.08998 * 109.54707 * 62.91756 * 17 16 14 29 29 H 1.09002 * 109.54775 * 183.18626 * 17 16 14 30 30 H 1.09000 * 109.46999 * 296.98076 * 18 17 16 31 31 H 1.09000 * 109.57629 * 176.85196 * 18 17 16 32 32 H 1.09003 * 109.47875 * 182.44158 * 19 18 17 33 33 H 1.08996 * 109.48393 * 62.40862 * 19 18 17 34 34 H 1.08003 * 119.90815 * 179.70961 * 21 12 11 35 35 H 1.07997 * 120.09647 * 180.27615 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8841 2.3965 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0488 -1.2342 0.2889 9 6 1.3537 -2.4048 -0.3760 10 6 1.8262 -3.6480 0.0874 11 6 1.1877 -4.7962 -0.2806 12 6 0.0717 -4.7413 -1.1127 13 8 -0.5577 -5.8877 -1.4736 14 6 -1.6961 -5.7614 -2.3281 15 1 -1.4186 -5.2053 -3.2237 16 6 -2.1932 -7.1537 -2.7254 17 6 -3.4490 -7.0127 -3.5911 18 6 -4.5035 -6.2169 -2.8156 19 6 -3.9171 -4.8607 -2.4149 20 8 -2.7355 -5.0651 -1.6377 21 6 -0.3983 -3.5161 -1.5805 22 6 0.2252 -2.3582 -1.2172 23 1 -0.4849 0.8401 -0.0004 24 1 2.6916 -3.6923 0.7319 25 1 1.5490 -5.7504 0.0735 26 1 -1.4173 -7.6701 -3.2907 27 1 -2.4316 -7.7252 -1.8283 28 1 -3.1998 -6.4854 -4.5119 29 1 -3.8401 -8.0017 -3.8301 30 1 -4.7895 -6.7689 -1.9203 31 1 -5.3804 -6.0631 -3.4445 32 1 -4.6488 -4.3081 -1.8255 33 1 -3.6687 -4.2928 -3.3115 34 1 -1.2613 -3.4825 -2.2290 35 1 -0.1431 -1.4089 -1.5771 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039214191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:09 Heat of formation + Delta-G solvation = -77.660775 kcal Electronic energy + Delta-G solvation = -17919.525718 eV Core-core repulsion = 15075.040901 eV Total energy + Delta-G solvation = -2844.484817 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.70937 -37.88978 -36.04314 -33.62957 -33.29133 -30.50602 -29.52716 -28.85893 -25.28705 -24.29580 -23.33228 -21.19674 -20.56461 -19.95996 -17.32752 -17.20075 -16.38672 -16.07659 -15.16479 -14.73605 -14.41514 -13.86570 -13.80915 -13.24269 -13.01102 -12.63746 -12.55539 -12.37665 -11.99206 -11.75785 -11.29078 -11.15266 -11.10524 -11.06769 -10.87591 -10.64839 -10.36159 -9.99868 -9.74911 -9.30975 -9.28386 -8.95088 -7.54886 -6.97494 -6.67235 -4.20009 2.80955 3.05532 3.11356 3.16763 3.23990 3.67403 3.99043 4.27055 4.68330 4.74647 4.77882 4.91610 5.11187 5.18795 5.43429 5.58532 5.67165 5.74067 5.75010 5.83549 5.95781 6.00064 6.21863 6.27554 6.35554 6.79260 6.97978 7.12734 7.33005 7.38743 7.51944 7.63896 8.00849 8.07192 8.21472 8.48118 8.70788 8.95936 9.05426 10.27194 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.037450 B = 0.005339 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.487841 B = 5242.784255 C = 5824.532316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.276 1.276 7 C -0.464 4.464 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.200 4.200 11 C -0.111 4.111 12 C -0.012 4.012 13 O -0.309 6.309 14 C 0.262 3.738 15 H 0.052 0.948 16 C -0.140 4.140 17 C -0.118 4.118 18 C -0.159 4.159 19 C 0.068 3.932 20 O -0.391 6.391 21 C -0.154 4.154 22 C -0.137 4.137 23 H 0.278 0.722 24 H 0.099 0.901 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.037 -7.683 -6.755 12.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.142 4.142 3 Si 0.730 3.270 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.087 3.913 10 C -0.220 4.220 11 C -0.130 4.130 12 C -0.055 4.055 13 O -0.226 6.226 14 C 0.167 3.833 15 H 0.070 0.930 16 C -0.178 4.178 17 C -0.156 4.156 18 C -0.197 4.197 19 C -0.009 4.009 20 O -0.312 6.312 21 C -0.173 4.173 22 C -0.157 4.157 23 H 0.089 0.911 24 H 0.117 0.883 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.146 -7.646 -6.492 12.316 hybrid contribution 0.067 0.908 -0.261 0.948 sum -7.079 -6.738 -6.753 11.879 Atomic orbital electron populations 1.69869 1.07515 1.28866 1.36240 1.25880 0.94682 1.01183 0.92443 0.86309 0.81017 0.81201 0.78442 1.18453 1.19836 1.20100 1.19499 0.98121 0.91235 1.40515 0.90485 1.17606 0.91732 0.92159 0.89797 1.20562 1.03393 0.92206 1.05847 1.19602 0.95757 0.97659 0.99954 1.18520 0.97465 0.83904 1.05593 1.85950 1.38649 1.31019 1.66958 1.22784 0.79831 0.91795 0.88891 0.93048 1.22006 0.97950 0.96761 1.01051 1.21573 0.94858 1.00878 0.98282 1.22256 0.98641 0.97707 1.01076 1.22471 0.86862 0.95622 0.95895 1.88013 1.24680 1.77016 1.41459 1.20636 1.00662 0.92622 1.03364 1.20939 0.98610 0.96455 0.99688 0.91105 0.88253 0.88604 0.90218 0.90232 0.91634 0.90942 0.90879 0.90811 0.88691 0.93259 0.88550 0.86214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.26 10.96 55.55 0.61 -20.65 16 2 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 3 Si 0.91 19.02 29.60 -169.99 -5.03 13.99 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 7 C -0.46 -12.61 9.04 -37.83 -0.34 -12.95 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.09 2.46 5.57 -106.80 -0.60 1.87 16 10 C -0.20 -5.12 9.74 -39.25 -0.38 -5.50 16 11 C -0.11 -2.70 9.92 -39.83 -0.40 -3.10 16 12 C -0.01 -0.30 6.59 -38.78 -0.26 -0.56 16 13 O -0.31 -6.78 10.05 -42.52 -0.43 -7.20 16 14 C 0.26 4.67 2.52 37.20 0.09 4.77 16 15 H 0.05 0.91 7.33 -51.93 -0.38 0.53 16 16 C -0.14 -1.88 5.78 -26.60 -0.15 -2.03 16 17 C -0.12 -1.23 6.03 -26.54 -0.16 -1.39 16 18 C -0.16 -1.68 6.13 -26.59 -0.16 -1.84 16 19 C 0.07 0.92 6.84 37.20 0.25 1.17 16 20 O -0.39 -7.28 8.92 -59.04 -0.53 -7.80 16 21 C -0.15 -3.85 8.55 -39.83 -0.34 -4.19 16 22 C -0.14 -3.72 8.64 -39.25 -0.34 -4.06 16 23 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 24 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 25 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.10 2.22 5.67 -52.48 -0.30 1.93 16 35 H 0.12 3.31 6.16 -52.49 -0.32 2.99 16 LS Contribution 287.97 15.07 4.34 4.34 Total: -1.00 -30.02 287.97 -8.68 -38.70 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.78 Total: 4.59 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: -2.87 Total: -25.97 kcal Atomic # 7 Polarization: -21.26 SS G_CDS: 0.61 Total: -20.65 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.95 Total: -15.00 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.02 -8.68 -38.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039214191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.957 kcal (2) G-P(sol) polarization free energy of solvation -30.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds