Wall clock time and date at job start Mon Mar 30 2020 06:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86800 * 120.00200 * 2 1 4 4 H 1.48505 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46894 * 299.99596 * 3 2 1 6 6 H 1.48500 * 109.47158 * 59.99614 * 3 2 1 7 7 C 1.39898 * 120.00025 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00154 * 197.95628 * 7 2 1 9 9 C 1.41213 * 119.99496 * 17.95610 * 7 2 1 10 10 C 1.40832 * 120.17640 * 204.54759 * 9 7 2 11 11 C 1.36440 * 119.81004 * 179.97438 * 10 9 7 12 12 C 1.39315 * 120.18624 * 0.02562 * 11 10 9 13 13 O 1.35669 * 119.81631 * 180.02562 * 12 11 10 14 14 C 1.42899 * 116.99933 * 179.97438 * 13 12 11 15 15 H 1.09006 * 109.48881 * 54.96979 * 14 13 12 16 16 C 1.53085 * 109.48375 * 174.99821 * 14 13 12 17 17 C 1.53175 * 109.22004 * 177.56191 * 16 14 13 18 18 C 1.53191 * 109.02983 * 303.11416 * 17 16 14 19 19 C 1.53090 * 109.21114 * 56.88488 * 18 17 16 20 20 O 1.42902 * 109.41489 * 302.42207 * 19 18 17 21 21 C 1.39312 * 120.36264 * 0.27321 * 12 11 10 22 22 C 1.36437 * 120.18512 * 359.44429 * 21 12 11 23 23 H 0.97000 * 119.99520 * 0.02562 * 1 2 3 24 24 H 1.07998 * 120.09472 * 359.95252 * 10 9 7 25 25 H 1.08001 * 119.90710 * 179.97438 * 11 10 9 26 26 H 1.09004 * 109.52494 * 297.49914 * 16 14 13 27 27 H 1.09003 * 109.52629 * 57.62270 * 16 14 13 28 28 H 1.08998 * 109.54707 * 62.91756 * 17 16 14 29 29 H 1.09002 * 109.54775 * 183.18626 * 17 16 14 30 30 H 1.09000 * 109.46999 * 296.98076 * 18 17 16 31 31 H 1.09000 * 109.57629 * 176.85196 * 18 17 16 32 32 H 1.09003 * 109.47875 * 182.44158 * 19 18 17 33 33 H 1.08996 * 109.48393 * 62.40862 * 19 18 17 34 34 H 1.08003 * 119.90815 * 179.70961 * 21 12 11 35 35 H 1.07997 * 120.09647 * 180.27615 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 0.0006 5 1 1.8842 2.3963 -1.2126 6 1 1.8841 2.3965 1.2124 7 6 2.0083 -1.2116 0.0005 8 1 3.0488 -1.2342 0.2889 9 6 1.3537 -2.4048 -0.3760 10 6 1.8262 -3.6480 0.0874 11 6 1.1877 -4.7962 -0.2806 12 6 0.0717 -4.7413 -1.1127 13 8 -0.5577 -5.8877 -1.4736 14 6 -1.6961 -5.7614 -2.3281 15 1 -1.4186 -5.2053 -3.2237 16 6 -2.1932 -7.1537 -2.7254 17 6 -3.4490 -7.0127 -3.5911 18 6 -4.5035 -6.2169 -2.8156 19 6 -3.9171 -4.8607 -2.4149 20 8 -2.7355 -5.0651 -1.6377 21 6 -0.3983 -3.5161 -1.5805 22 6 0.2252 -2.3582 -1.2172 23 1 -0.4849 0.8401 -0.0004 24 1 2.6916 -3.6923 0.7319 25 1 1.5490 -5.7504 0.0735 26 1 -1.4173 -7.6701 -3.2907 27 1 -2.4316 -7.7252 -1.8283 28 1 -3.1998 -6.4854 -4.5119 29 1 -3.8401 -8.0017 -3.8301 30 1 -4.7895 -6.7689 -1.9203 31 1 -5.3804 -6.0631 -3.4445 32 1 -4.6488 -4.3081 -1.8255 33 1 -3.6687 -4.2928 -3.3115 34 1 -1.2613 -3.4825 -2.2290 35 1 -0.1431 -1.4089 -1.5771 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039214191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:08 Heat of formation + Delta-G solvation = -94.075998 kcal Electronic energy + Delta-G solvation = -17920.237536 eV Core-core repulsion = 15075.040901 eV Total energy + Delta-G solvation = -2845.196634 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16144 -39.52924 -37.79540 -35.23539 -34.69145 -31.82855 -31.51034 -30.64385 -26.98634 -25.67733 -24.60497 -23.00693 -22.32877 -21.16687 -19.27585 -18.92110 -17.73899 -17.54407 -16.80217 -16.10796 -15.76850 -15.52720 -15.11190 -14.80401 -14.61776 -14.24287 -13.89903 -13.88646 -13.64165 -13.48575 -13.05313 -12.77504 -12.50654 -12.22435 -12.17232 -12.01396 -11.89331 -11.63576 -11.38001 -11.20811 -10.86651 -10.49760 -9.55104 -8.95823 -8.60427 -6.24001 0.92847 1.04615 1.39517 1.50424 1.55529 2.22554 2.27217 2.72067 2.97578 3.70076 3.71600 3.83296 3.96912 3.97464 4.09300 4.31854 4.41197 4.42357 4.59986 4.74956 4.81895 4.87344 5.00198 5.01008 5.05919 5.10433 5.15528 5.32359 5.36652 5.50364 5.66219 5.96925 6.05152 6.17166 6.27220 6.55028 6.75958 6.94343 7.07196 8.36786 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.037450 B = 0.005339 C = 0.004806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.487841 B = 5242.784255 C = 5824.532316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.033 3.967 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.078 0.922 9 C 0.058 3.942 10 C -0.209 4.209 11 C -0.118 4.118 12 C -0.009 4.009 13 O -0.320 6.320 14 C 0.252 3.748 15 H 0.050 0.950 16 C -0.133 4.133 17 C -0.114 4.114 18 C -0.152 4.152 19 C 0.056 3.944 20 O -0.428 6.428 21 C -0.156 4.156 22 C -0.159 4.159 23 H 0.287 0.713 24 H 0.113 0.887 25 H 0.122 0.878 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.101 0.899 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.705 -8.251 -7.639 13.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.528 4.528 8 H 0.096 0.904 9 C 0.056 3.944 10 C -0.228 4.228 11 C -0.137 4.137 12 C -0.052 4.052 13 O -0.236 6.236 14 C 0.157 3.843 15 H 0.067 0.933 16 C -0.171 4.171 17 C -0.151 4.151 18 C -0.189 4.189 19 C -0.020 4.020 20 O -0.350 6.350 21 C -0.175 4.175 22 C -0.179 4.179 23 H 0.097 0.903 24 H 0.131 0.869 25 H 0.140 0.860 26 H 0.110 0.890 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.122 0.878 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.835 -8.240 -7.387 13.559 hybrid contribution 0.164 0.982 -0.009 0.995 sum -7.672 -7.258 -7.395 12.893 Atomic orbital electron populations 1.69925 1.09119 1.30385 1.36492 1.26786 0.95454 1.04615 0.91243 0.85132 0.79447 0.76061 0.78868 1.18011 1.18910 1.19135 1.19768 0.98451 0.92344 1.42260 0.90364 1.17972 0.92501 0.93341 0.90630 1.20794 1.03940 0.92108 1.05995 1.19918 0.95646 0.98425 0.99694 1.18680 0.97308 0.84551 1.04674 1.85938 1.40299 1.29802 1.67598 1.23223 0.78837 0.94585 0.87631 0.93257 1.22053 0.99758 0.93706 1.01585 1.21624 0.93122 1.02597 0.97747 1.22221 0.99534 0.95624 1.01567 1.22810 0.85430 0.97923 0.95840 1.87940 1.26246 1.77610 1.43166 1.20759 1.00844 0.92439 1.03437 1.20901 0.99541 0.96566 1.00887 0.90257 0.86921 0.86031 0.89009 0.90736 0.90684 0.88099 0.91173 0.87789 0.88099 0.92649 0.87294 0.87667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.22 10.96 21.82 0.24 -44.98 16 2 C 0.03 1.70 5.13 85.24 0.44 2.14 16 3 Si 0.98 39.09 29.60 68.60 2.03 41.12 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 5 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 6 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.50 -27.77 9.04 23.40 0.21 -27.56 16 8 H 0.08 4.17 7.91 -2.91 -0.02 4.15 16 9 C 0.06 3.28 5.57 -21.28 -0.12 3.16 16 10 C -0.21 -10.84 9.74 22.48 0.22 -10.62 16 11 C -0.12 -5.76 9.92 22.11 0.22 -5.54 16 12 C -0.01 -0.44 6.59 22.79 0.15 -0.29 16 13 O -0.32 -13.89 10.05 -67.09 -0.67 -14.57 16 14 C 0.25 8.78 2.52 72.01 0.18 8.97 16 15 H 0.05 1.72 7.33 -2.38 -0.02 1.70 16 16 C -0.13 -3.30 5.78 30.68 0.18 -3.12 16 17 C -0.11 -1.97 6.03 30.72 0.19 -1.79 16 18 C -0.15 -2.76 6.13 30.69 0.19 -2.57 16 19 C 0.06 1.42 6.84 72.01 0.49 1.92 16 20 O -0.43 -15.79 8.92 -126.21 -1.13 -16.92 16 21 C -0.16 -7.96 8.55 22.11 0.19 -7.77 16 22 C -0.16 -8.92 8.64 22.48 0.19 -8.73 16 23 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 24 H 0.11 5.37 8.06 -2.91 -0.02 5.35 16 25 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 26 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.11 5.14 5.67 -2.91 -0.02 5.12 16 35 H 0.11 6.09 6.16 -2.91 -0.02 6.07 16 Total: -1.00 -66.04 287.97 4.27 -61.77 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 1.07 Total: 25.39 kcal Atomic # 6 Polarization: -54.54 SS G_CDS: 2.73 Total: -51.81 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: 0.24 Total: -44.98 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -1.80 Total: -31.48 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -66.04 4.27 -61.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039214191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.310 kcal (2) G-P(sol) polarization free energy of solvation -66.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds