Wall clock time and date at job start Mon Mar 30 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46872 * 107.27262 * 3 2 1 5 5 N 1.46902 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.46906 * 110.99514 * 170.00288 * 5 4 3 7 7 C 1.50698 * 109.46720 * 293.94660 * 6 5 4 8 8 H 1.07998 * 120.00349 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99634 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00195 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99793 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47117 * 60.00302 * 11 9 7 13 13 H 1.48499 * 109.47028 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47496 * 300.00332 * 11 9 7 15 15 C 1.39850 * 110.99898 * 293.94967 * 5 4 3 16 16 C 1.38833 * 120.08056 * 300.00509 * 15 5 4 17 17 C 1.38146 * 119.94542 * 180.02562 * 16 15 5 18 18 C 1.38273 * 120.11552 * 359.97438 * 17 16 15 19 19 C 1.38288 * 120.15871 * 0.03093 * 18 17 16 20 20 C 1.38276 * 120.05209 * 359.67189 * 19 18 17 21 21 F 1.35095 * 120.06220 * 180.32351 * 20 19 18 22 22 H 1.08993 * 109.47684 * 347.27276 * 3 2 1 23 23 H 1.09000 * 109.47070 * 227.26989 * 3 2 1 24 24 H 1.09000 * 109.47050 * 299.99739 * 4 3 2 25 25 H 1.09001 * 109.46801 * 59.99851 * 4 3 2 26 26 H 1.08991 * 109.47611 * 53.95180 * 6 5 4 27 27 H 1.09000 * 109.46667 * 173.95554 * 6 5 4 28 28 H 0.96997 * 119.99641 * 179.97438 * 10 9 7 29 29 H 1.08000 * 120.02356 * 359.97438 * 16 15 5 30 30 H 1.08008 * 119.94348 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.92175 * 180.02562 * 18 17 16 32 32 H 1.08004 * 119.97398 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.4292 -1.3775 5 7 4.5868 0.4304 -1.3773 6 6 5.1132 0.6044 -2.7377 7 6 4.7559 -0.5986 -3.5721 8 1 4.1936 -1.4108 -3.1357 9 6 5.1468 -0.6622 -4.8928 10 7 5.8319 0.3267 -5.4242 11 14 4.7033 -2.1530 -5.9273 12 1 3.2262 -2.2950 -5.9832 13 1 5.2355 -1.9773 -7.3025 14 1 5.2950 -3.3715 -5.3189 15 6 5.0870 1.4130 -0.5170 16 6 4.7744 2.7489 -0.7297 17 6 5.2704 3.7172 0.1215 18 6 6.0773 3.3583 1.1855 19 6 6.3916 2.0291 1.4016 20 6 5.8938 1.0537 0.5574 21 9 6.1954 -0.2455 0.7722 22 1 2.9718 -1.0015 0.2264 23 1 2.9710 0.6981 0.7549 24 1 2.7547 -0.2683 -2.1324 25 1 2.7539 1.4315 -1.6039 26 1 4.6782 1.4985 -3.1841 27 1 6.1974 0.7092 -2.6970 28 1 6.1073 0.2817 -6.3532 29 1 4.1446 3.0308 -1.5606 30 1 5.0275 4.7565 -0.0443 31 1 6.4631 4.1179 1.8493 32 1 7.0225 1.7521 2.2333 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041229645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:14 Heat of formation + Delta-G solvation = 12.153242 kcal Electronic energy + Delta-G solvation = -17493.454124 eV Core-core repulsion = 14561.696381 eV Total energy + Delta-G solvation = -2931.757743 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.32185 -39.39954 -36.94790 -35.95953 -32.80097 -31.29478 -30.31051 -29.30342 -26.37708 -23.73034 -22.88051 -22.07957 -20.25907 -17.47343 -17.25879 -16.53440 -16.01410 -15.74678 -15.25970 -14.78870 -14.65150 -14.37965 -13.78921 -13.61959 -13.45010 -12.85103 -12.45830 -12.33323 -12.14082 -11.96296 -11.88816 -11.56854 -11.14769 -11.03755 -10.78605 -10.65508 -10.54348 -10.09432 -9.42150 -8.69315 -8.54376 -8.25824 -7.69414 -6.12346 -4.15047 1.40506 1.43175 2.91753 2.96606 3.29904 3.34313 3.37094 3.80525 4.04621 4.36753 4.54231 4.80850 5.01028 5.14092 5.23715 5.29095 5.38353 5.41385 5.56022 5.72072 5.86681 6.12299 6.26865 6.32655 6.43056 6.53886 6.60273 6.91307 7.09102 7.22185 7.67839 7.72945 7.82523 8.00152 8.37989 8.90775 9.49777 10.98172 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.007818 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.786156 B = 3580.549192 C = 4498.454869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.220 3.780 3 C -0.030 4.030 4 C 0.071 3.929 5 N -0.501 5.501 6 C 0.203 3.797 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.059 3.941 10 N -0.895 5.895 11 Si 0.899 3.101 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.074 3.926 16 C -0.122 4.122 17 C -0.125 4.125 18 C -0.107 4.107 19 C -0.157 4.157 20 C 0.115 3.885 21 F -0.128 7.128 22 H 0.117 0.883 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.037 0.963 26 H 0.001 0.999 27 H 0.035 0.965 28 H 0.264 0.736 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.126 0.874 32 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.387 5.208 12.005 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.098 4.098 3 C -0.070 4.070 4 C -0.057 4.057 5 N -0.223 5.223 6 C 0.081 3.919 7 C -0.554 4.554 8 H 0.085 0.915 9 C -0.143 4.143 10 N -0.534 5.534 11 Si 0.727 3.273 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.021 4.021 16 C -0.143 4.143 17 C -0.144 4.144 18 C -0.125 4.125 19 C -0.176 4.176 20 C 0.095 3.905 21 F -0.107 7.107 22 H 0.135 0.865 23 H 0.117 0.883 24 H 0.121 0.879 25 H 0.055 0.945 26 H 0.018 0.982 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.140 0.860 31 H 0.143 0.857 32 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.058 4.730 11.972 12.916 hybrid contribution 0.205 -0.156 -0.976 1.010 sum -0.853 4.573 10.996 11.939 Atomic orbital electron populations 1.81166 1.13109 1.09630 1.09069 1.29235 0.95269 0.92551 0.92717 1.19398 0.80837 1.05840 1.00948 1.21980 0.87819 1.01120 0.94758 1.59852 1.06179 1.43585 1.12668 1.19815 0.95711 0.96829 0.79589 1.21073 1.35690 1.03905 0.94702 0.91514 1.24966 0.95036 0.96467 0.97839 1.69939 1.37762 1.31606 1.14119 0.86539 0.78766 0.82935 0.79096 1.20192 1.21307 1.20013 1.19168 0.97843 0.90853 0.94245 1.21713 1.00332 0.92761 0.99462 1.21047 0.98598 0.99351 0.95426 1.20889 0.98456 0.95120 0.98073 1.21046 1.02926 0.92832 1.00815 1.17663 0.98617 0.78639 0.95615 1.91493 1.91300 1.33765 1.94105 0.86509 0.88313 0.87949 0.94455 0.98154 0.94646 0.92681 0.85300 0.85963 0.85651 0.85087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.66 18.54 42.15 0.78 -6.88 16 2 C 0.22 3.23 15.43 -20.76 -0.32 2.91 16 3 C -0.03 -0.39 5.68 -29.51 -0.17 -0.56 16 4 C 0.07 1.19 4.63 -3.82 -0.02 1.18 16 5 N -0.50 -9.69 4.32 -172.38 -0.74 -10.44 16 6 C 0.20 4.88 4.37 -4.97 -0.02 4.86 16 7 C -0.52 -13.55 8.37 -34.44 -0.29 -13.84 16 8 H 0.07 1.71 7.18 -52.49 -0.38 1.34 16 9 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -25.52 13.29 55.43 0.74 -24.79 16 11 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.07 1.26 3.56 -83.67 -0.30 0.96 16 16 C -0.12 -1.84 8.61 -39.40 -0.34 -2.18 16 17 C -0.13 -1.53 10.04 -39.60 -0.40 -1.93 16 18 C -0.11 -1.21 10.04 -39.55 -0.40 -1.60 16 19 C -0.16 -1.98 10.02 -39.55 -0.40 -2.37 16 20 C 0.12 1.82 7.31 -39.25 -0.29 1.53 16 21 F -0.13 -2.21 17.08 2.25 0.04 -2.17 16 22 H 0.12 1.46 8.14 -51.93 -0.42 1.04 16 23 H 0.10 1.18 7.39 -51.93 -0.38 0.80 16 24 H 0.10 1.89 6.65 -51.93 -0.35 1.55 16 25 H 0.04 0.60 6.93 -51.93 -0.36 0.24 16 26 H 0.00 0.02 7.68 -51.93 -0.40 -0.38 16 27 H 0.04 0.95 8.06 -51.93 -0.42 0.53 16 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.13 1.95 7.11 -52.49 -0.37 1.58 16 30 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 31 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 32 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 289.21 15.07 4.36 4.36 Total: -1.00 -29.50 289.21 -6.36 -35.86 By element: Atomic # 1 Polarization: 1.14 SS G_CDS: -3.48 Total: -2.34 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -3.03 Total: -9.54 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.77 Total: -42.10 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.50 -6.36 -35.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041229645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.016 kcal (2) G-P(sol) polarization free energy of solvation -29.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds