Wall clock time and date at job start Mon Mar 30 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46872 * 107.27262 * 3 2 1 5 5 N 1.46902 * 109.46626 * 179.97438 * 4 3 2 6 6 C 1.46906 * 110.99514 * 170.00288 * 5 4 3 7 7 C 1.50698 * 109.46720 * 293.94660 * 6 5 4 8 8 H 1.07998 * 120.00349 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99634 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00195 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99793 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47117 * 60.00302 * 11 9 7 13 13 H 1.48499 * 109.47028 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47496 * 300.00332 * 11 9 7 15 15 C 1.39850 * 110.99898 * 293.94967 * 5 4 3 16 16 C 1.38833 * 120.08056 * 300.00509 * 15 5 4 17 17 C 1.38146 * 119.94542 * 180.02562 * 16 15 5 18 18 C 1.38273 * 120.11552 * 359.97438 * 17 16 15 19 19 C 1.38288 * 120.15871 * 0.03093 * 18 17 16 20 20 C 1.38276 * 120.05209 * 359.67189 * 19 18 17 21 21 F 1.35095 * 120.06220 * 180.32351 * 20 19 18 22 22 H 1.08993 * 109.47684 * 347.27276 * 3 2 1 23 23 H 1.09000 * 109.47070 * 227.26989 * 3 2 1 24 24 H 1.09000 * 109.47050 * 299.99739 * 4 3 2 25 25 H 1.09001 * 109.46801 * 59.99851 * 4 3 2 26 26 H 1.08991 * 109.47611 * 53.95180 * 6 5 4 27 27 H 1.09000 * 109.46667 * 173.95554 * 6 5 4 28 28 H 0.96997 * 119.99641 * 179.97438 * 10 9 7 29 29 H 1.08000 * 120.02356 * 359.97438 * 16 15 5 30 30 H 1.08008 * 119.94348 * 179.97438 * 17 16 15 31 31 H 1.07999 * 119.92175 * 180.02562 * 18 17 16 32 32 H 1.08004 * 119.97398 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1177 0.4292 -1.3775 5 7 4.5868 0.4304 -1.3773 6 6 5.1132 0.6044 -2.7377 7 6 4.7559 -0.5986 -3.5721 8 1 4.1936 -1.4108 -3.1357 9 6 5.1468 -0.6622 -4.8928 10 7 5.8319 0.3267 -5.4242 11 14 4.7033 -2.1530 -5.9273 12 1 3.2262 -2.2950 -5.9832 13 1 5.2355 -1.9773 -7.3025 14 1 5.2950 -3.3715 -5.3189 15 6 5.0870 1.4130 -0.5170 16 6 4.7744 2.7489 -0.7297 17 6 5.2704 3.7172 0.1215 18 6 6.0773 3.3583 1.1855 19 6 6.3916 2.0291 1.4016 20 6 5.8938 1.0537 0.5574 21 9 6.1954 -0.2455 0.7722 22 1 2.9718 -1.0015 0.2264 23 1 2.9710 0.6981 0.7549 24 1 2.7547 -0.2683 -2.1324 25 1 2.7539 1.4315 -1.6039 26 1 4.6782 1.4985 -3.1841 27 1 6.1974 0.7092 -2.6970 28 1 6.1073 0.2817 -6.3532 29 1 4.1446 3.0308 -1.5606 30 1 5.0275 4.7565 -0.0443 31 1 6.4631 4.1179 1.8493 32 1 7.0225 1.7521 2.2333 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041229645.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:14 Heat of formation + Delta-G solvation = -4.792036 kcal Electronic energy + Delta-G solvation = -17494.188926 eV Core-core repulsion = 14561.696381 eV Total energy + Delta-G solvation = -2932.492545 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.55926 -40.64074 -38.18452 -37.29790 -34.78763 -32.57348 -31.38756 -30.75153 -28.09798 -25.10983 -24.45538 -23.26606 -21.60593 -18.84847 -18.51012 -18.20407 -17.18496 -17.15162 -16.69337 -16.34020 -15.97296 -15.57969 -15.18136 -14.87016 -14.81186 -14.21332 -14.05382 -13.76918 -13.54749 -13.37173 -13.07694 -12.83552 -12.77008 -12.59621 -12.29941 -12.15136 -11.95009 -11.84461 -11.34463 -10.61385 -9.78454 -9.41246 -9.25088 -8.20407 -6.29805 0.31267 0.35767 1.43299 1.45152 1.52713 1.67862 1.75952 2.40081 2.74222 2.77979 3.13585 3.36948 3.57083 3.98797 4.04075 4.15394 4.20893 4.46903 4.50538 4.55372 4.73014 4.91757 4.99947 5.14842 5.20326 5.25985 5.33390 5.49157 5.56013 5.66185 5.95903 6.09316 6.12341 6.52420 6.73715 6.84288 7.39464 8.90227 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.007818 C = 0.006223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.786156 B = 3580.549192 C = 4498.454869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.244 3.756 3 C -0.011 4.011 4 C 0.073 3.927 5 N -0.505 5.505 6 C 0.223 3.777 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.006 3.994 10 N -0.931 5.931 11 Si 0.963 3.037 12 H -0.269 1.269 13 H -0.285 1.285 14 H -0.269 1.269 15 C 0.042 3.958 16 C -0.137 4.137 17 C -0.118 4.118 18 C -0.091 4.091 19 C -0.148 4.148 20 C 0.093 3.907 21 F -0.143 7.143 22 H 0.129 0.871 23 H 0.120 0.880 24 H 0.079 0.921 25 H 0.039 0.961 26 H -0.022 1.022 27 H 0.000 1.000 28 H 0.264 0.736 29 H 0.117 0.883 30 H 0.152 0.848 31 H 0.169 0.831 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 5.851 13.825 15.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.073 4.073 3 C -0.052 4.052 4 C -0.055 4.055 5 N -0.226 5.226 6 C 0.099 3.901 7 C -0.564 4.564 8 H 0.087 0.913 9 C -0.192 4.192 10 N -0.571 5.571 11 Si 0.788 3.212 12 H -0.194 1.194 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.053 4.053 16 C -0.157 4.157 17 C -0.137 4.137 18 C -0.108 4.108 19 C -0.167 4.167 20 C 0.073 3.927 21 F -0.122 7.122 22 H 0.147 0.853 23 H 0.138 0.862 24 H 0.098 0.902 25 H 0.057 0.943 26 H -0.004 1.004 27 H 0.018 0.982 28 H 0.073 0.927 29 H 0.135 0.865 30 H 0.169 0.831 31 H 0.186 0.814 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.824 5.372 13.820 14.850 hybrid contribution 0.185 -0.237 -1.456 1.486 sum -0.639 5.136 12.364 13.404 Atomic orbital electron populations 1.81191 1.14192 1.11027 1.10221 1.29296 0.95168 0.91320 0.91564 1.19268 0.79710 1.07000 0.99189 1.21903 0.86611 1.00715 0.96295 1.59611 1.07415 1.45284 1.10297 1.19331 0.93425 0.95124 0.82261 1.21446 1.35147 1.04535 0.95259 0.91298 1.25821 0.94991 0.99202 0.99200 1.70064 1.39083 1.33565 1.14429 0.85522 0.78775 0.79512 0.77359 1.19359 1.21040 1.19403 1.19240 0.99944 0.91123 0.94959 1.21707 1.01078 0.92745 1.00141 1.21407 0.97559 1.00084 0.94648 1.21391 0.96523 0.95396 0.97519 1.21413 1.02105 0.92668 1.00518 1.17958 0.99420 0.78794 0.96512 1.91450 1.91538 1.34928 1.94251 0.85266 0.86201 0.90238 0.94317 1.00379 0.98188 0.92685 0.86537 0.83059 0.81381 0.82304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.25 18.54 20.01 0.37 -15.88 16 2 C 0.24 6.94 15.43 89.44 1.38 8.32 16 3 C -0.01 -0.29 5.68 28.79 0.16 -0.13 16 4 C 0.07 2.48 4.63 86.31 0.40 2.88 16 5 N -0.50 -20.05 4.32 -699.30 -3.02 -23.07 16 6 C 0.22 11.24 4.37 85.56 0.37 11.61 16 7 C -0.53 -28.47 8.37 25.60 0.21 -28.25 16 8 H 0.07 3.61 7.18 -2.91 -0.02 3.59 16 9 C 0.01 0.36 5.46 84.66 0.46 0.82 16 10 N -0.93 -54.61 13.29 21.45 0.28 -54.33 16 11 Si 0.96 43.46 29.54 68.60 2.03 45.48 16 12 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 13 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 14 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 15 C 0.04 1.43 3.56 38.21 0.14 1.57 16 16 C -0.14 -4.02 8.61 22.39 0.19 -3.83 16 17 C -0.12 -2.54 10.04 22.26 0.22 -2.32 16 18 C -0.09 -1.64 10.04 22.29 0.22 -1.41 16 19 C -0.15 -3.25 10.02 22.29 0.22 -3.02 16 20 C 0.09 2.84 7.31 22.48 0.16 3.01 16 21 F -0.14 -4.86 17.08 44.97 0.77 -4.09 16 22 H 0.13 3.07 8.14 -2.39 -0.02 3.05 16 23 H 0.12 2.65 7.39 -2.39 -0.02 2.63 16 24 H 0.08 3.03 6.65 -2.39 -0.02 3.02 16 25 H 0.04 1.29 6.93 -2.39 -0.02 1.27 16 26 H -0.02 -1.15 7.68 -2.39 -0.02 -1.17 16 27 H 0.00 0.00 8.06 -2.39 -0.02 -0.02 16 28 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 29 H 0.12 3.63 7.11 -2.91 -0.02 3.61 16 30 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -65.92 289.21 5.72 -60.20 By element: Atomic # 1 Polarization: 1.31 SS G_CDS: 1.13 Total: 2.45 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 4.16 Total: -10.76 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -2.37 Total: -93.28 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.77 Total: -4.09 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -65.92 5.72 -60.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041229645.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.413 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds