Wall clock time and date at job start Mon Mar 30 2020 06:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47360 * 320.30787 * 3 2 1 5 5 N 1.46493 * 109.47156 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99811 * 90.00429 * 5 4 3 7 7 C 1.50703 * 109.47289 * 89.99713 * 6 5 4 8 8 H 1.07994 * 119.99399 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99789 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00144 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99733 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46762 * 60.00562 * 11 9 7 13 13 H 1.48506 * 109.46725 * 180.02562 * 11 9 7 14 14 H 1.48494 * 109.47116 * 300.00217 * 11 9 7 15 15 C 1.39814 * 120.00028 * 270.00004 * 5 4 3 16 16 C 1.38871 * 120.05319 * 359.72726 * 15 5 4 17 17 C 1.38127 * 119.95497 * 179.76173 * 16 15 5 18 18 C 1.38463 * 120.04566 * 0.49586 * 17 16 15 19 19 F 1.35099 * 119.95384 * 179.74302 * 18 17 16 20 20 C 1.38473 * 120.09968 * 359.75602 * 18 17 16 21 21 C 1.38124 * 120.04763 * 0.02562 * 20 18 17 22 22 H 1.09001 * 109.46575 * 200.30887 * 3 2 1 23 23 H 1.08997 * 109.47167 * 80.31154 * 3 2 1 24 24 H 1.09006 * 109.46591 * 59.99820 * 4 3 2 25 25 H 1.09005 * 109.46719 * 300.00580 * 4 3 2 26 26 H 1.09001 * 109.47060 * 210.00163 * 6 5 4 27 27 H 1.09004 * 109.47073 * 329.99652 * 6 5 4 28 28 H 0.96997 * 119.99752 * 179.97438 * 10 9 7 29 29 H 1.08001 * 120.02201 * 0.02562 * 16 15 5 30 30 H 1.07992 * 119.97838 * 180.22855 * 17 16 15 31 31 H 1.07995 * 119.97402 * 179.97438 * 20 18 17 32 32 H 1.08001 * 120.02146 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1186 -1.1091 0.9213 5 7 4.5835 -1.1080 0.9217 6 6 5.3151 -0.2973 1.8984 7 6 5.5665 -1.1128 3.1406 8 1 5.2166 -2.1330 3.1966 9 6 6.2439 -0.5568 4.2049 10 7 6.6703 0.6855 4.1363 11 14 6.5548 -1.5674 5.7448 12 1 7.3576 -2.7669 5.3959 13 1 7.2965 -0.7456 6.7348 14 1 5.2572 -1.9927 6.3282 15 6 5.2835 -1.8806 -0.0099 16 6 4.5911 -2.6539 -0.9325 17 6 5.2846 -3.4126 -1.8552 18 6 6.6692 -3.4106 -1.8540 19 9 7.3457 -4.1574 -2.7539 20 6 7.3618 -2.6443 -0.9316 21 6 6.6723 -1.8806 -0.0101 22 1 2.9709 0.9646 0.3567 23 1 2.9715 -0.1721 -1.0130 24 1 2.7556 -2.0730 0.5645 25 1 2.7551 -0.9362 1.9343 26 1 6.2674 0.0157 1.4703 27 1 4.7253 0.5828 2.1548 28 1 7.1466 1.0767 4.8853 29 1 3.5111 -2.6587 -0.9313 30 1 4.7466 -4.0112 -2.5752 31 1 8.4417 -2.6446 -0.9323 32 1 7.2129 -1.2835 0.7094 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041229647.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:16 Heat of formation + Delta-G solvation = 7.521227 kcal Electronic energy + Delta-G solvation = -17118.201231 eV Core-core repulsion = 14186.242629 eV Total energy + Delta-G solvation = -2931.958602 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.29595 -39.12892 -36.89649 -35.64730 -33.02697 -31.50916 -30.52380 -28.80581 -26.66649 -24.14518 -22.82900 -21.93425 -20.07295 -17.63882 -17.37968 -16.55899 -16.12468 -15.92081 -15.04310 -14.93465 -14.70412 -14.01985 -13.93553 -13.76330 -13.15491 -12.92931 -12.56688 -12.36195 -12.20101 -12.06187 -11.90724 -11.59741 -11.36154 -11.06926 -10.84180 -10.75225 -10.38670 -10.05255 -9.91262 -8.97567 -8.65823 -8.59318 -6.69301 -6.16052 -4.28562 1.72924 1.87898 2.78992 2.85336 3.22512 3.27841 3.30556 3.67432 4.15211 4.30523 4.36375 4.86821 5.07756 5.11650 5.20178 5.23435 5.29170 5.54361 5.68715 5.82585 5.90164 6.11489 6.17972 6.34093 6.63728 6.68867 6.79313 6.95779 7.16489 7.33435 7.61136 7.69386 7.97489 8.04733 8.19227 8.79516 9.39317 10.84884 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.012408 B = 0.008409 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.111162 B = 3328.770062 C = 5179.337804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.218 3.782 3 C -0.052 4.052 4 C 0.131 3.869 5 N -0.606 5.606 6 C 0.248 3.752 7 C -0.538 4.538 8 H 0.061 0.939 9 C 0.065 3.935 10 N -0.893 5.893 11 Si 0.895 3.105 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.229 3.771 16 C -0.194 4.194 17 C -0.106 4.106 18 C 0.009 3.991 19 F -0.158 7.158 20 C -0.105 4.105 21 C -0.156 4.156 22 H 0.114 0.886 23 H 0.108 0.892 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.266 0.734 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 -3.121 -8.774 9.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.100 4.100 3 C -0.094 4.094 4 C 0.005 3.995 5 N -0.312 5.312 6 C 0.129 3.871 7 C -0.576 4.576 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.723 3.277 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.123 3.877 16 C -0.217 4.217 17 C -0.126 4.126 18 C -0.012 4.012 19 F -0.137 7.137 20 C -0.125 4.125 21 C -0.178 4.178 22 H 0.132 0.868 23 H 0.126 0.874 24 H 0.092 0.908 25 H 0.107 0.893 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.310 -2.852 -8.518 9.573 hybrid contribution 0.806 -0.615 0.836 1.314 sum -2.504 -3.467 -7.682 8.792 Atomic orbital electron populations 1.81196 1.13124 1.09117 1.09263 1.29199 0.95197 0.92861 0.92756 1.19954 0.81074 1.04174 1.04155 1.21140 0.81963 0.96586 0.99819 1.47134 1.03215 1.47480 1.33328 1.19372 0.92178 0.89892 0.85670 1.21521 1.36934 0.99543 0.99633 0.92120 1.24935 0.95278 0.94962 0.98663 1.69901 1.38043 1.12961 1.32239 0.86595 0.78506 0.80148 0.82469 1.20071 1.21182 1.20217 1.17946 0.91426 0.89894 0.88395 1.20459 0.99447 1.02754 0.99070 1.20689 0.92114 1.00143 0.99655 1.17395 0.90078 0.99787 0.93927 1.91398 1.80515 1.75357 1.66416 1.20869 1.00017 0.96744 0.94846 1.20814 0.92595 1.03183 1.01211 0.86837 0.87376 0.90833 0.89346 0.94318 0.94715 0.92463 0.85760 0.85946 0.85636 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.90 18.54 42.15 0.78 -6.12 16 2 C 0.22 2.78 15.43 -20.76 -0.32 2.45 16 3 C -0.05 -0.57 6.03 -29.52 -0.18 -0.75 16 4 C 0.13 1.79 5.12 -4.05 -0.02 1.77 16 5 N -0.61 -10.33 2.59 -173.09 -0.45 -10.78 16 6 C 0.25 5.27 4.91 -5.19 -0.03 5.24 16 7 C -0.54 -13.18 9.39 -34.44 -0.32 -13.50 16 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 10 N -0.89 -23.76 13.29 55.43 0.74 -23.03 16 11 Si 0.90 20.12 29.54 -169.99 -5.02 15.09 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 15 C 0.23 3.81 6.55 -83.74 -0.55 3.26 16 16 C -0.19 -2.78 9.21 -39.39 -0.36 -3.14 16 17 C -0.11 -1.51 10.02 -39.54 -0.40 -1.91 16 18 C 0.01 0.15 7.30 -39.41 -0.29 -0.14 16 19 F -0.16 -2.49 17.26 2.25 0.04 -2.45 16 20 C -0.11 -1.66 10.02 -39.54 -0.40 -2.06 16 21 C -0.16 -2.69 9.21 -39.38 -0.36 -3.06 16 22 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.07 0.91 6.19 -51.93 -0.32 0.58 16 25 H 0.09 1.30 8.07 -51.93 -0.42 0.88 16 26 H 0.04 0.87 6.20 -51.93 -0.32 0.55 16 27 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.12 1.50 6.14 -52.49 -0.32 1.18 16 30 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.13 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.14 2.71 6.14 -52.49 -0.32 2.39 16 LS Contribution 290.51 15.07 4.38 4.38 Total: -1.00 -27.27 290.51 -6.22 -33.49 By element: Atomic # 1 Polarization: 3.06 SS G_CDS: -3.36 Total: -0.31 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.32 Total: -10.28 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 1.07 Total: -39.93 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.04 Total: -2.45 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.27 -6.22 -33.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041229647.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.008 kcal (2) G-P(sol) polarization free energy of solvation -27.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds