Wall clock time and date at job start Mon Mar 30 2020 06:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46993 * 2 1 4 4 C 1.46904 * 110.99663 * 75.84726 * 3 2 1 5 5 C 1.50705 * 109.47057 * 199.28416 * 4 3 2 6 6 H 1.07998 * 119.99757 * 355.06147 * 5 4 3 7 7 C 1.37874 * 119.99989 * 175.05862 * 5 4 3 8 8 N 1.31512 * 120.00229 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47420 * 59.99319 * 9 7 5 11 11 H 1.48496 * 109.47190 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46859 * 299.99816 * 9 7 5 13 13 C 1.39340 * 111.00229 * 199.79968 * 3 2 1 14 14 C 1.39106 * 119.92635 * 295.77674 * 13 3 2 15 15 C 1.37694 * 120.09583 * 179.72082 * 14 13 3 16 16 C 1.39782 * 119.96551 * 0.57340 * 15 14 13 17 17 C 1.43198 * 120.07153 * 179.68199 * 16 15 14 18 18 N 7.38902 * 158.44545 * 308.46666 * 2 1 3 19 19 C 1.39818 * 119.85839 * 359.69865 * 16 15 14 20 20 C 1.37826 * 119.90162 * 0.02562 * 19 16 15 21 21 F 1.35103 * 119.98587 * 179.97438 * 20 19 16 22 22 H 1.08998 * 109.47098 * 54.85667 * 1 2 3 23 23 H 1.09008 * 109.46694 * 174.85237 * 1 2 3 24 24 H 1.08998 * 109.47052 * 294.85288 * 1 2 3 25 25 H 1.08996 * 109.47018 * 240.00257 * 2 1 3 26 26 H 1.09003 * 109.47081 * 119.99887 * 2 1 3 27 27 H 1.09002 * 109.47538 * 79.28531 * 4 3 2 28 28 H 1.09003 * 109.47432 * 319.28310 * 4 3 2 29 29 H 0.96996 * 120.00392 * 180.02562 * 8 7 5 30 30 H 1.07997 * 119.95335 * 359.97438 * 14 13 3 31 31 H 1.08007 * 120.01140 * 180.24996 * 15 14 13 32 32 H 1.08003 * 120.05086 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8789 1.9930 1.3299 5 6 1.9299 3.4940 1.2039 6 1 2.1340 3.9488 0.2459 7 6 1.7161 4.2864 2.3117 8 7 1.4670 3.7325 3.4783 9 14 1.7786 6.1468 2.1555 10 1 0.7466 6.5972 1.1874 11 1 1.5167 6.7639 3.4805 12 1 3.1219 6.5582 1.6740 13 6 3.3400 1.4479 -0.4406 14 6 4.3479 0.8363 0.2977 15 6 5.6531 0.8913 -0.1375 16 6 5.9678 1.5730 -1.3166 17 6 7.3253 1.6374 -1.7677 18 7 8.4023 1.6887 -2.1255 19 6 4.9542 2.1920 -2.0544 20 6 3.6489 2.1284 -1.6166 21 9 2.6682 2.7264 -2.3280 22 1 -0.3633 0.5915 -0.8403 23 1 -0.3633 -1.0236 -0.0922 24 1 -0.3633 0.4319 0.9325 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.6920 1.6545 1.9721 28 1 0.9245 1.6973 1.7656 29 1 1.3162 4.2900 4.2575 30 1 4.1058 0.3140 1.2114 31 1 6.4340 0.4125 0.4348 32 1 5.1937 2.7191 -2.9661 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042451202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:18 Heat of formation + Delta-G solvation = 15.718797 kcal Electronic energy + Delta-G solvation = -17527.252350 eV Core-core repulsion = 14595.649222 eV Total energy + Delta-G solvation = -2931.603128 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.32511 -39.54146 -37.23492 -35.78251 -32.73362 -31.22331 -30.53688 -29.04156 -26.69111 -23.69565 -22.71709 -22.44588 -20.39007 -19.00195 -16.85650 -16.33382 -15.94534 -15.68993 -15.34621 -14.70589 -14.06417 -13.97673 -13.89481 -13.78032 -13.33880 -13.22926 -12.67896 -12.28648 -12.12117 -11.87253 -11.70625 -11.42463 -11.39434 -11.07569 -10.91338 -10.72768 -10.43307 -9.93440 -9.40428 -8.80179 -8.50614 -8.29388 -7.70287 -6.10573 -4.11617 0.80426 1.36967 2.65906 2.96405 3.31664 3.35244 3.39244 3.80889 3.90696 4.28703 4.47617 4.70997 4.93468 5.08542 5.26439 5.40117 5.44911 5.64730 5.71043 5.88623 5.93956 6.12476 6.17130 6.30979 6.38904 6.46895 6.68952 6.82449 7.06697 7.10638 7.47995 7.64299 7.95647 8.05908 8.32734 8.94501 9.52850 10.99837 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.008034 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.728010 B = 3484.228960 C = 4255.758780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 N -0.512 5.512 4 C 0.195 3.805 5 C -0.508 4.508 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.898 5.898 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.138 3.862 14 C -0.126 4.126 15 C -0.070 4.070 16 C -0.030 4.030 17 C 0.268 3.732 18 N -0.431 5.431 19 C -0.107 4.107 20 C 0.119 3.881 21 F -0.121 7.121 22 H 0.062 0.938 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.000 1.000 28 H 0.044 0.956 29 H 0.263 0.737 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 -7.491 -6.756 10.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 N -0.234 5.234 4 C 0.072 3.928 5 C -0.547 4.547 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.538 5.538 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.041 3.959 14 C -0.146 4.146 15 C -0.091 4.091 16 C -0.033 4.033 17 C -0.047 4.047 18 N -0.106 5.106 19 C -0.129 4.129 20 C 0.098 3.902 21 F -0.100 7.100 22 H 0.081 0.919 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.053 0.947 27 H 0.018 0.982 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.247 -7.075 -7.451 11.118 hybrid contribution -0.133 0.822 0.720 1.100 sum 4.114 -6.253 -6.732 10.067 Atomic orbital electron populations 1.21734 0.94705 1.00395 1.03244 1.22041 0.96577 0.88351 0.99778 1.59807 1.14177 1.16811 1.32608 1.20002 0.97356 0.94865 0.80532 1.21075 1.48067 0.90393 0.95119 0.91937 1.24922 0.95182 0.98973 0.95144 1.69919 1.48573 1.35650 0.99608 0.86579 0.78776 0.85117 0.77155 1.20039 1.21296 1.20173 1.19159 0.91316 0.93476 0.91958 1.21588 0.92232 1.00593 1.00228 1.20985 0.96863 0.97320 0.93966 1.15599 0.85086 1.05009 0.97624 1.25607 0.92607 0.93247 0.93222 1.81221 1.11642 1.09111 1.08661 1.20915 0.90418 1.00631 1.00887 1.17304 0.84683 0.96735 0.91493 1.91520 1.60972 1.80921 1.76543 0.91924 0.93111 0.92010 0.92071 0.94738 0.98189 0.93760 0.92742 0.84377 0.84930 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.96 37.16 0.37 -1.79 16 2 C 0.06 0.94 5.25 -3.82 -0.02 0.92 16 3 N -0.51 -10.04 4.16 -172.38 -0.72 -10.76 16 4 C 0.19 4.62 4.47 -4.97 -0.02 4.60 16 5 C -0.51 -13.63 8.95 -34.44 -0.31 -13.94 16 6 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -25.47 13.29 55.43 0.74 -24.74 16 9 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.14 2.44 4.19 -83.72 -0.35 2.09 16 14 C -0.13 -1.90 8.52 -39.46 -0.34 -2.24 16 15 C -0.07 -0.90 9.74 -39.20 -0.38 -1.28 16 16 C -0.03 -0.39 5.74 -106.80 -0.61 -1.00 16 17 C 0.27 3.66 15.33 -22.47 -0.34 3.31 16 18 N -0.43 -6.58 18.54 41.84 0.78 -5.81 16 19 C -0.11 -1.47 9.72 -39.14 -0.38 -1.85 16 20 C 0.12 1.99 7.30 -39.32 -0.29 1.71 16 21 F -0.12 -2.23 17.07 2.25 0.04 -2.19 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 24 H 0.06 1.04 6.90 -51.93 -0.36 0.68 16 25 H 0.06 0.86 7.91 -51.93 -0.41 0.45 16 26 H 0.03 0.52 7.94 -51.93 -0.41 0.11 16 27 H 0.00 0.01 6.67 -51.93 -0.35 -0.34 16 28 H 0.04 1.12 6.57 -51.93 -0.34 0.78 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.14 1.99 7.37 -52.49 -0.39 1.61 16 31 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 32 H 0.14 1.63 8.06 -52.48 -0.42 1.20 16 LS Contribution 290.41 15.07 4.38 4.38 Total: -1.00 -29.01 290.41 -6.07 -35.09 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: -3.49 Total: -4.29 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.77 Total: -7.96 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.80 Total: -41.31 kcal Atomic # 9 Polarization: -2.23 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.01 -6.07 -35.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.806 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds