Wall clock time and date at job start Mon Mar 30 2020 06:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46993 * 2 1 4 4 C 1.46904 * 110.99663 * 75.84726 * 3 2 1 5 5 C 1.50705 * 109.47057 * 199.28416 * 4 3 2 6 6 H 1.07998 * 119.99757 * 355.06147 * 5 4 3 7 7 C 1.37874 * 119.99989 * 175.05862 * 5 4 3 8 8 N 1.31512 * 120.00229 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00015 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47420 * 59.99319 * 9 7 5 11 11 H 1.48496 * 109.47190 * 179.97438 * 9 7 5 12 12 H 1.48508 * 109.46859 * 299.99816 * 9 7 5 13 13 C 1.39340 * 111.00229 * 199.79968 * 3 2 1 14 14 C 1.39106 * 119.92635 * 295.77674 * 13 3 2 15 15 C 1.37694 * 120.09583 * 179.72082 * 14 13 3 16 16 C 1.39782 * 119.96551 * 0.57340 * 15 14 13 17 17 C 1.43198 * 120.07153 * 179.68199 * 16 15 14 18 18 N 7.38902 * 158.44545 * 308.46666 * 2 1 3 19 19 C 1.39818 * 119.85839 * 359.69865 * 16 15 14 20 20 C 1.37826 * 119.90162 * 0.02562 * 19 16 15 21 21 F 1.35103 * 119.98587 * 179.97438 * 20 19 16 22 22 H 1.08998 * 109.47098 * 54.85667 * 1 2 3 23 23 H 1.09008 * 109.46694 * 174.85237 * 1 2 3 24 24 H 1.08998 * 109.47052 * 294.85288 * 1 2 3 25 25 H 1.08996 * 109.47018 * 240.00257 * 2 1 3 26 26 H 1.09003 * 109.47081 * 119.99887 * 2 1 3 27 27 H 1.09002 * 109.47538 * 79.28531 * 4 3 2 28 28 H 1.09003 * 109.47432 * 319.28310 * 4 3 2 29 29 H 0.96996 * 120.00392 * 180.02562 * 8 7 5 30 30 H 1.07997 * 119.95335 * 359.97438 * 14 13 3 31 31 H 1.08007 * 120.01140 * 180.24996 * 15 14 13 32 32 H 1.08003 * 120.05086 * 180.02562 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.8789 1.9930 1.3299 5 6 1.9299 3.4940 1.2039 6 1 2.1340 3.9488 0.2459 7 6 1.7161 4.2864 2.3117 8 7 1.4670 3.7325 3.4783 9 14 1.7786 6.1468 2.1555 10 1 0.7466 6.5972 1.1874 11 1 1.5167 6.7639 3.4805 12 1 3.1219 6.5582 1.6740 13 6 3.3400 1.4479 -0.4406 14 6 4.3479 0.8363 0.2977 15 6 5.6531 0.8913 -0.1375 16 6 5.9678 1.5730 -1.3166 17 6 7.3253 1.6374 -1.7677 18 7 8.4023 1.6887 -2.1255 19 6 4.9542 2.1920 -2.0544 20 6 3.6489 2.1284 -1.6166 21 9 2.6682 2.7264 -2.3280 22 1 -0.3633 0.5915 -0.8403 23 1 -0.3633 -1.0236 -0.0922 24 1 -0.3633 0.4319 0.9325 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 2.6920 1.6545 1.9721 28 1 0.9245 1.6973 1.7656 29 1 1.3162 4.2900 4.2575 30 1 4.1058 0.3140 1.2114 31 1 6.4340 0.4125 0.4348 32 1 5.1937 2.7191 -2.9661 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042451202.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:18 Heat of formation + Delta-G solvation = -0.229549 kcal Electronic energy + Delta-G solvation = -17527.943922 eV Core-core repulsion = 14595.649222 eV Total energy + Delta-G solvation = -2932.294701 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.65765 -40.80335 -38.53195 -37.01657 -34.75065 -32.45315 -31.70037 -30.59653 -28.37688 -25.19575 -24.25996 -23.62155 -21.80347 -20.20012 -18.64665 -17.62752 -17.49440 -16.98759 -16.78544 -16.36603 -15.53069 -15.37392 -15.08645 -14.93499 -14.66899 -14.44360 -14.24078 -13.79032 -13.44126 -13.36165 -12.98404 -12.94345 -12.79245 -12.58247 -12.49038 -12.28528 -12.11855 -11.60479 -11.34283 -10.58021 -9.95597 -9.55006 -9.22123 -8.18186 -6.25481 -0.37088 0.21369 1.41973 1.43213 1.51024 1.54984 1.80281 2.41173 2.64714 2.77040 3.04189 3.16649 3.48740 3.82419 4.02887 4.17335 4.23812 4.46123 4.50828 4.70116 4.72770 4.90107 5.04371 5.06626 5.15407 5.20081 5.25459 5.36474 5.43528 5.65797 5.69175 6.05227 6.37578 6.42946 6.62411 6.87739 7.42855 8.91503 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017240 B = 0.008034 C = 0.006578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.728010 B = 3484.228960 C = 4255.758780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.057 3.943 3 N -0.524 5.524 4 C 0.212 3.788 5 C -0.519 4.519 6 H 0.051 0.949 7 C 0.012 3.988 8 N -0.928 5.928 9 Si 0.952 3.048 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.271 1.271 13 C 0.109 3.891 14 C -0.130 4.130 15 C -0.051 4.051 16 C -0.020 4.020 17 C 0.289 3.711 18 N -0.453 5.453 19 C -0.091 4.091 20 C 0.095 3.905 21 F -0.137 7.137 22 H 0.052 0.948 23 H 0.084 0.916 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.041 0.959 27 H -0.012 1.012 28 H 0.021 0.979 29 H 0.264 0.736 30 H 0.142 0.858 31 H 0.166 0.834 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.281 -7.799 -7.463 11.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.069 4.069 3 N -0.247 5.247 4 C 0.088 3.912 5 C -0.557 4.557 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.568 5.568 9 Si 0.778 3.222 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.196 1.196 13 C 0.013 3.987 14 C -0.151 4.151 15 C -0.072 4.072 16 C -0.024 4.024 17 C -0.025 4.025 18 N -0.129 5.129 19 C -0.113 4.113 20 C 0.074 3.926 21 F -0.116 7.116 22 H 0.071 0.929 23 H 0.103 0.897 24 H 0.055 0.945 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.006 0.994 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.159 0.841 31 H 0.183 0.817 32 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 5.544 -7.396 -8.178 12.342 hybrid contribution -0.484 0.848 0.890 1.321 sum 5.060 -6.548 -7.287 11.027 Atomic orbital electron populations 1.21708 0.94374 1.02105 1.01407 1.22171 0.96866 0.86784 1.01094 1.59605 1.16179 1.18905 1.29966 1.19582 0.95469 0.93588 0.82570 1.21356 1.47541 0.92265 0.94552 0.93028 1.25657 0.95029 1.03029 0.94932 1.70015 1.49633 1.37020 1.00171 0.85688 0.78872 0.80384 0.77263 1.19826 1.20684 1.19585 1.19347 0.90963 0.95289 0.93124 1.21619 0.92647 1.00590 1.00200 1.21262 0.96591 0.95888 0.93491 1.15576 0.84681 1.04594 0.97535 1.25398 0.92173 0.92466 0.92482 1.81266 1.12371 1.09879 1.09407 1.21083 0.89145 0.99700 1.01367 1.17528 0.85452 0.97679 0.91909 1.91473 1.61813 1.81400 1.76896 0.92875 0.89740 0.94492 0.89818 0.94093 0.99438 0.96126 0.92681 0.84072 0.81682 0.81797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.96 71.98 0.72 -3.43 16 2 C 0.06 1.77 5.25 86.30 0.45 2.22 16 3 N -0.52 -20.73 4.16 -699.28 -2.91 -23.63 16 4 C 0.21 10.28 4.47 85.56 0.38 10.66 16 5 C -0.52 -28.28 8.95 25.60 0.23 -28.05 16 6 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 7 C 0.01 0.67 5.46 84.65 0.46 1.13 16 8 N -0.93 -53.33 13.29 21.45 0.28 -53.04 16 9 Si 0.95 43.73 29.54 68.60 2.03 45.75 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.11 3.80 4.19 38.42 0.16 3.96 16 14 C -0.13 -3.73 8.52 22.35 0.19 -3.54 16 15 C -0.05 -1.16 9.74 22.51 0.22 -0.94 16 16 C -0.02 -0.47 5.74 -21.28 -0.12 -0.60 16 17 C 0.29 7.01 15.33 88.33 1.35 8.36 16 18 N -0.45 -12.68 18.54 19.00 0.35 -12.33 16 19 C -0.09 -2.32 9.72 22.55 0.22 -2.10 16 20 C 0.09 3.10 7.30 22.44 0.16 3.26 16 21 F -0.14 -5.05 17.07 44.97 0.77 -4.28 16 22 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 23 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 24 H 0.04 1.27 6.90 -2.39 -0.02 1.25 16 25 H 0.08 2.23 7.91 -2.39 -0.02 2.21 16 26 H 0.04 1.22 7.94 -2.39 -0.02 1.20 16 27 H -0.01 -0.60 6.67 -2.39 -0.02 -0.62 16 28 H 0.02 1.09 6.57 -2.39 -0.02 1.07 16 29 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.14 3.92 7.37 -2.91 -0.02 3.90 16 31 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 32 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -62.52 290.41 6.09 -56.44 By element: Atomic # 1 Polarization: -0.99 SS G_CDS: 1.13 Total: 0.15 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 4.43 Total: -9.05 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -2.27 Total: -89.00 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.77 Total: -4.28 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -62.52 6.09 -56.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042451202.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.208 kcal (2) G-P(sol) polarization free energy of solvation -62.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds