Wall clock time and date at job start Mon Mar 30 2020 06:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86792 * 120.00199 * 2 1 4 4 H 1.48503 * 109.47366 * 83.27379 * 3 2 1 5 5 H 1.48498 * 109.47453 * 203.27568 * 3 2 1 6 6 H 1.48510 * 109.47138 * 323.27486 * 3 2 1 7 7 C 1.39936 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99832 * 23.63822 * 7 2 1 9 9 C 1.41401 * 119.99783 * 203.64364 * 7 2 1 10 10 C 1.40766 * 120.21847 * 26.24184 * 9 7 2 11 11 C 1.37634 * 119.85275 * 179.74251 * 10 9 7 12 12 C 1.38564 * 120.30786 * 0.55853 * 11 10 9 13 13 C 1.39118 * 120.44034 * 359.69348 * 12 11 10 14 14 O 1.35898 * 119.92979 * 180.02562 * 13 12 11 15 15 C 1.42900 * 117.00115 * 359.97101 * 14 13 12 16 16 H 1.08996 * 109.47920 * 310.02827 * 15 14 13 17 17 C 1.53096 * 109.48203 * 190.00301 * 15 14 13 18 18 C 1.53172 * 109.16556 * 182.41094 * 17 15 14 19 19 C 1.53177 * 109.03525 * 56.97938 * 18 17 15 20 20 C 1.53093 * 109.16443 * 303.02101 * 19 18 17 21 21 O 1.42895 * 109.41609 * 57.60806 * 20 19 18 22 22 C 1.38140 * 120.13692 * 0.02562 * 13 12 11 23 23 H 0.97000 * 119.99773 * 173.16816 * 1 2 3 24 24 H 1.07996 * 120.07390 * 0.02562 * 10 9 7 25 25 H 1.08005 * 119.84705 * 180.27318 * 11 10 9 26 26 H 1.08000 * 119.77740 * 179.71441 * 12 11 10 27 27 H 1.09000 * 109.51945 * 302.31907 * 17 15 14 28 28 H 1.09005 * 109.52301 * 62.44163 * 17 15 14 29 29 H 1.08999 * 109.54796 * 176.84865 * 18 17 15 30 30 H 1.09010 * 109.54123 * 297.11577 * 18 17 15 31 31 H 1.08993 * 109.52241 * 62.92722 * 19 18 17 32 32 H 1.09007 * 109.51874 * 183.05410 * 19 18 17 33 33 H 1.09001 * 109.47803 * 177.59412 * 20 19 18 34 34 H 1.08998 * 109.47772 * 297.61173 * 20 19 18 35 35 H 1.07999 * 120.14849 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3479 2.1284 1.3904 5 1 3.6037 1.4033 -0.5532 6 1 1.5180 2.6075 -0.8373 7 6 2.0080 -1.2119 0.0005 8 1 1.5359 -2.1081 -0.3741 9 6 3.3330 -1.2630 0.4917 10 6 3.7704 -0.3281 1.4488 11 6 5.0601 -0.3881 1.9256 12 6 5.9336 -1.3574 1.4594 13 6 5.5161 -2.2844 0.5098 14 8 6.3813 -3.2310 0.0602 15 6 7.7021 -3.2142 0.6054 16 1 8.1083 -2.2047 0.5429 17 6 8.5939 -4.1735 -0.1871 18 6 9.9911 -4.1954 0.4402 19 6 9.8710 -4.5966 1.9136 20 6 8.9299 -3.6210 2.6250 21 8 7.6584 -3.6266 1.9730 22 6 4.2240 -2.2446 0.0229 23 1 -0.4850 -0.8341 -0.0999 24 1 3.0941 0.4318 1.8115 25 1 5.3942 0.3266 2.6632 26 1 6.9451 -1.3938 1.8361 27 1 8.1662 -5.1757 -0.1589 28 1 8.6632 -3.8360 -1.2213 29 1 10.6154 -4.9184 -0.0849 30 1 10.4390 -3.2042 0.3675 31 1 9.4692 -5.6073 1.9842 32 1 10.8548 -4.5621 2.3818 33 1 8.8070 -3.9268 3.6640 34 1 9.3525 -2.6169 2.5892 35 1 3.8998 -2.9638 -0.7146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044368411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:50 Heat of formation + Delta-G solvation = -84.154732 kcal Electronic energy + Delta-G solvation = -17903.801296 eV Core-core repulsion = 15059.034880 eV Total energy + Delta-G solvation = -2844.766416 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.90993 -38.11308 -36.26835 -33.76807 -33.49098 -30.73997 -30.12855 -28.58595 -25.08031 -24.75874 -23.38820 -21.32189 -20.76060 -19.99707 -18.52174 -16.79690 -16.58512 -16.25067 -15.14711 -15.00602 -14.55962 -14.14191 -13.84655 -13.35270 -13.31233 -13.04907 -12.74853 -12.59344 -12.14338 -11.96039 -11.32406 -11.28779 -11.23529 -11.04051 -10.87861 -10.41039 -10.20980 -10.17682 -9.73428 -9.48262 -9.32727 -8.94754 -7.79025 -7.28784 -7.10210 -4.53606 2.68353 2.76062 3.23386 3.37965 3.43699 3.58944 4.04933 4.09617 4.55931 4.63336 4.66017 4.78411 4.95719 5.03771 5.28610 5.43885 5.46967 5.54693 5.62564 5.72606 5.83131 5.87452 6.00138 6.11622 6.26011 6.50996 6.73247 6.78936 7.13095 7.31579 7.47853 7.56973 7.64326 7.75733 7.84315 8.25463 8.47518 8.64844 8.80422 10.00648 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.048789 B = 0.005195 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.767045 B = 5388.063346 C = 5581.415244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.046 3.954 3 Si 1.075 2.925 4 H -0.277 1.277 5 H -0.262 1.262 6 H -0.290 1.290 7 C -0.516 4.516 8 H 0.077 0.923 9 C 0.123 3.877 10 C -0.264 4.264 11 C -0.049 4.049 12 C -0.309 4.309 13 C 0.151 3.849 14 O -0.307 6.307 15 C 0.260 3.740 16 H 0.059 0.941 17 C -0.141 4.141 18 C -0.118 4.118 19 C -0.160 4.160 20 C 0.069 3.931 21 O -0.392 6.392 22 C -0.245 4.245 23 H 0.287 0.713 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.099 0.901 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.016 -4.270 1.876 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.174 4.174 3 Si 0.901 3.099 4 H -0.203 1.203 5 H -0.186 1.186 6 H -0.218 1.218 7 C -0.544 4.544 8 H 0.095 0.905 9 C 0.120 3.880 10 C -0.283 4.283 11 C -0.068 4.068 12 C -0.329 4.329 13 C 0.108 3.892 14 O -0.222 6.222 15 C 0.164 3.836 16 H 0.077 0.923 17 C -0.179 4.179 18 C -0.156 4.156 19 C -0.198 4.198 20 C -0.007 4.007 21 O -0.313 6.313 22 C -0.265 4.265 23 H 0.098 0.902 24 H 0.121 0.879 25 H 0.114 0.886 26 H 0.117 0.883 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.068 0.932 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 16.480 -2.882 1.881 16.836 hybrid contribution 0.371 -1.684 0.048 1.725 sum 16.852 -4.566 1.928 17.566 Atomic orbital electron populations 1.70535 1.08132 1.33500 1.31244 1.27306 0.95510 1.04588 0.90009 0.83569 0.75993 0.72720 0.77664 1.20347 1.18613 1.21773 1.20597 0.97748 0.97531 1.38521 0.90501 1.17450 0.92023 0.89596 0.88960 1.20978 0.96767 1.05575 1.05024 1.20387 0.93433 0.95996 0.96961 1.20416 1.00180 1.03702 1.08578 1.18756 0.89235 0.87371 0.93804 1.86131 1.21636 1.53454 1.60936 1.22883 0.83221 0.96477 0.80983 0.92335 1.22033 0.94541 1.01261 1.00067 1.21577 0.96137 1.02185 0.95693 1.22260 1.00356 1.00944 0.96194 1.22481 0.83444 0.98185 0.96628 1.87963 1.29872 1.88433 1.25046 1.20268 0.90712 1.07258 1.08306 0.90165 0.87908 0.88578 0.88274 0.90075 0.89979 0.90782 0.91554 0.90795 0.90692 0.88653 0.93196 0.87864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.14 13.65 55.55 0.76 -21.38 16 2 C 0.05 1.24 5.34 -17.34 -0.09 1.14 16 3 Si 1.07 24.81 24.98 -169.99 -4.25 20.56 16 4 H -0.28 -6.08 6.68 56.52 0.38 -5.70 16 5 H -0.26 -6.04 7.00 56.52 0.40 -5.65 16 6 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.39 9.40 -37.74 -0.35 -14.75 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 C 0.12 3.31 5.15 -106.84 -0.55 2.76 16 10 C -0.26 -6.68 7.35 -38.85 -0.29 -6.97 16 11 C -0.05 -1.13 10.02 -39.68 -0.40 -1.53 16 12 C -0.31 -6.99 8.70 -39.13 -0.34 -7.33 16 13 C 0.15 3.61 6.58 -39.29 -0.26 3.35 16 14 O -0.31 -6.52 10.04 -43.23 -0.43 -6.96 16 15 C 0.26 4.32 2.49 37.21 0.09 4.41 16 16 H 0.06 0.95 7.02 -51.93 -0.36 0.58 16 17 C -0.14 -1.78 5.79 -26.59 -0.15 -1.93 16 18 C -0.12 -1.11 6.03 -26.55 -0.16 -1.27 16 19 C -0.16 -1.49 6.14 -26.59 -0.16 -1.65 16 20 C 0.07 0.81 6.84 37.21 0.25 1.06 16 21 O -0.39 -6.64 9.40 -59.04 -0.56 -7.19 16 22 C -0.25 -6.35 9.73 -38.72 -0.38 -6.72 16 23 H 0.29 7.61 8.73 -40.82 -0.36 7.25 16 24 H 0.10 2.54 4.68 -52.49 -0.25 2.30 16 25 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 26 H 0.10 2.01 5.75 -52.49 -0.30 1.71 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.10 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 283.91 15.07 4.28 4.28 Total: -1.00 -29.95 283.91 -7.73 -37.68 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -4.75 Total: 2.43 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.79 Total: -29.41 kcal Atomic # 7 Polarization: -22.14 SS G_CDS: 0.76 Total: -21.38 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.99 Total: -14.15 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -4.25 Total: 20.56 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.95 -7.73 -37.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.476 kcal (2) G-P(sol) polarization free energy of solvation -29.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds