Wall clock time and date at job start Mon Mar 30 2020 06:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86792 * 120.00199 * 2 1 4 4 H 1.48503 * 109.47366 * 83.27379 * 3 2 1 5 5 H 1.48498 * 109.47453 * 203.27568 * 3 2 1 6 6 H 1.48510 * 109.47138 * 323.27486 * 3 2 1 7 7 C 1.39936 * 119.99914 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99832 * 23.63822 * 7 2 1 9 9 C 1.41401 * 119.99783 * 203.64364 * 7 2 1 10 10 C 1.40766 * 120.21847 * 26.24184 * 9 7 2 11 11 C 1.37634 * 119.85275 * 179.74251 * 10 9 7 12 12 C 1.38564 * 120.30786 * 0.55853 * 11 10 9 13 13 C 1.39118 * 120.44034 * 359.69348 * 12 11 10 14 14 O 1.35898 * 119.92979 * 180.02562 * 13 12 11 15 15 C 1.42900 * 117.00115 * 359.97101 * 14 13 12 16 16 H 1.08996 * 109.47920 * 310.02827 * 15 14 13 17 17 C 1.53096 * 109.48203 * 190.00301 * 15 14 13 18 18 C 1.53172 * 109.16556 * 182.41094 * 17 15 14 19 19 C 1.53177 * 109.03525 * 56.97938 * 18 17 15 20 20 C 1.53093 * 109.16443 * 303.02101 * 19 18 17 21 21 O 1.42895 * 109.41609 * 57.60806 * 20 19 18 22 22 C 1.38140 * 120.13692 * 0.02562 * 13 12 11 23 23 H 0.97000 * 119.99773 * 173.16816 * 1 2 3 24 24 H 1.07996 * 120.07390 * 0.02562 * 10 9 7 25 25 H 1.08005 * 119.84705 * 180.27318 * 11 10 9 26 26 H 1.08000 * 119.77740 * 179.71441 * 12 11 10 27 27 H 1.09000 * 109.51945 * 302.31907 * 17 15 14 28 28 H 1.09005 * 109.52301 * 62.44163 * 17 15 14 29 29 H 1.08999 * 109.54796 * 176.84865 * 18 17 15 30 30 H 1.09010 * 109.54123 * 297.11577 * 18 17 15 31 31 H 1.08993 * 109.52241 * 62.92722 * 19 18 17 32 32 H 1.09007 * 109.51874 * 183.05410 * 19 18 17 33 33 H 1.09001 * 109.47803 * 177.59412 * 20 19 18 34 34 H 1.08998 * 109.47772 * 297.61173 * 20 19 18 35 35 H 1.07999 * 120.14849 * 179.97438 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 2.3479 2.1284 1.3904 5 1 3.6037 1.4033 -0.5532 6 1 1.5180 2.6075 -0.8373 7 6 2.0080 -1.2119 0.0005 8 1 1.5359 -2.1081 -0.3741 9 6 3.3330 -1.2630 0.4917 10 6 3.7704 -0.3281 1.4488 11 6 5.0601 -0.3881 1.9256 12 6 5.9336 -1.3574 1.4594 13 6 5.5161 -2.2844 0.5098 14 8 6.3813 -3.2310 0.0602 15 6 7.7021 -3.2142 0.6054 16 1 8.1083 -2.2047 0.5429 17 6 8.5939 -4.1735 -0.1871 18 6 9.9911 -4.1954 0.4402 19 6 9.8710 -4.5966 1.9136 20 6 8.9299 -3.6210 2.6250 21 8 7.6584 -3.6266 1.9730 22 6 4.2240 -2.2446 0.0229 23 1 -0.4850 -0.8341 -0.0999 24 1 3.0941 0.4318 1.8115 25 1 5.3942 0.3266 2.6632 26 1 6.9451 -1.3938 1.8361 27 1 8.1662 -5.1757 -0.1589 28 1 8.6632 -3.8360 -1.2213 29 1 10.6154 -4.9184 -0.0849 30 1 10.4390 -3.2042 0.3675 31 1 9.4692 -5.6073 1.9842 32 1 10.8548 -4.5621 2.3818 33 1 8.8070 -3.9268 3.6640 34 1 9.3525 -2.6169 2.5892 35 1 3.8998 -2.9638 -0.7146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044368411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:49 Heat of formation + Delta-G solvation = -102.000579 kcal Electronic energy + Delta-G solvation = -17904.575150 eV Core-core repulsion = 15059.034880 eV Total energy + Delta-G solvation = -2845.540270 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.29280 -39.64234 -37.97133 -35.49151 -34.71126 -32.10368 -31.90421 -30.26973 -26.92000 -25.91299 -24.51968 -23.16086 -22.32965 -21.19135 -20.40288 -18.50155 -17.87423 -17.56328 -16.91521 -16.33450 -15.79691 -15.55709 -15.35731 -14.92148 -14.83932 -14.61333 -14.02163 -13.83081 -13.79878 -13.63375 -12.99207 -12.80288 -12.40523 -12.20810 -12.09844 -12.04526 -11.86883 -11.59230 -11.31363 -11.27581 -10.89116 -10.52292 -9.78752 -9.34160 -8.99299 -6.65213 0.75479 0.84547 1.38099 1.57226 1.79603 2.07435 2.18340 2.57144 2.91049 3.44893 3.66998 3.79180 3.94872 3.97297 4.05615 4.21824 4.38590 4.46912 4.58596 4.59782 4.72462 4.81365 4.86643 4.88805 4.98551 5.05167 5.08902 5.29371 5.32366 5.39777 5.63987 5.69901 5.80636 5.86809 6.14515 6.32918 6.45003 6.75405 6.78767 7.92059 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.048789 B = 0.005195 C = 0.005015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.767045 B = 5388.063346 C = 5581.415244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.017 3.983 3 Si 1.107 2.893 4 H -0.253 1.253 5 H -0.264 1.264 6 H -0.276 1.276 7 C -0.552 4.552 8 H 0.045 0.955 9 C 0.106 3.894 10 C -0.278 4.278 11 C -0.045 4.045 12 C -0.295 4.295 13 C 0.153 3.847 14 O -0.324 6.324 15 C 0.250 3.750 16 H 0.067 0.933 17 C -0.138 4.138 18 C -0.113 4.113 19 C -0.155 4.155 20 C 0.057 3.943 21 O -0.425 6.425 22 C -0.274 4.274 23 H 0.279 0.721 24 H 0.108 0.892 25 H 0.140 0.860 26 H 0.129 0.871 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.064 0.936 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.761 -3.309 3.167 21.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.198 4.198 3 Si 0.926 3.074 4 H -0.178 1.178 5 H -0.188 1.188 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.063 0.937 9 C 0.103 3.897 10 C -0.297 4.297 11 C -0.063 4.063 12 C -0.315 4.315 13 C 0.109 3.891 14 O -0.239 6.239 15 C 0.155 3.845 16 H 0.085 0.915 17 C -0.176 4.176 18 C -0.150 4.150 19 C -0.193 4.193 20 C -0.018 4.018 21 O -0.347 6.347 22 C -0.294 4.294 23 H 0.090 0.910 24 H 0.126 0.874 25 H 0.157 0.843 26 H 0.147 0.853 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.125 0.875 34 H 0.082 0.918 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.238 -1.949 3.184 20.579 hybrid contribution -0.558 -2.157 -0.296 2.248 sum 19.680 -4.106 2.888 20.310 Atomic orbital electron populations 1.70603 1.08555 1.32998 1.33365 1.28425 0.95616 1.06864 0.88899 0.83201 0.74923 0.70043 0.79225 1.17796 1.18846 1.20209 1.20588 0.99076 0.97251 1.41167 0.93686 1.17618 0.91732 0.90707 0.89632 1.21133 0.98175 1.05439 1.04924 1.20855 0.92246 0.96353 0.96888 1.20823 1.01447 1.02266 1.06922 1.18832 0.88973 0.87848 0.93401 1.86121 1.23571 1.52592 1.61659 1.23333 0.81033 0.98158 0.81928 0.91540 1.22101 0.95629 0.99570 1.00270 1.21620 0.94004 1.03744 0.95662 1.22242 1.01179 0.99758 0.96073 1.22852 0.82066 0.99827 0.97067 1.87904 1.33124 1.88722 1.24992 1.20352 0.92272 1.07580 1.09201 0.91032 0.87391 0.84251 0.85307 0.91090 0.89287 0.88507 0.90223 0.91503 0.87650 0.87541 0.91788 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.92 13.65 21.82 0.30 -46.63 16 2 C 0.02 0.93 5.34 85.25 0.46 1.38 16 3 Si 1.11 49.48 24.98 68.60 1.71 51.20 16 4 H -0.25 -10.29 6.68 99.48 0.66 -9.62 16 5 H -0.26 -11.79 7.00 99.48 0.70 -11.09 16 6 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.55 -32.43 9.40 23.46 0.22 -32.21 16 8 H 0.04 2.81 8.06 -2.91 -0.02 2.79 16 9 C 0.11 5.84 5.15 -21.30 -0.11 5.74 16 10 C -0.28 -13.71 7.35 22.75 0.17 -13.55 16 11 C -0.05 -1.94 10.02 22.20 0.22 -1.71 16 12 C -0.30 -12.53 8.70 22.56 0.20 -12.33 16 13 C 0.15 7.24 6.58 22.46 0.15 7.38 16 14 O -0.32 -13.63 10.04 -69.63 -0.70 -14.33 16 15 C 0.25 7.79 2.49 72.01 0.18 7.97 16 16 H 0.07 1.94 7.02 -2.39 -0.02 1.93 16 17 C -0.14 -3.16 5.79 30.68 0.18 -2.98 16 18 C -0.11 -1.68 6.03 30.71 0.19 -1.49 16 19 C -0.16 -2.28 6.14 30.68 0.19 -2.09 16 20 C 0.06 1.14 6.84 72.01 0.49 1.63 16 21 O -0.43 -13.42 9.40 -126.21 -1.19 -14.61 16 22 C -0.27 -14.60 9.73 22.83 0.22 -14.38 16 23 H 0.28 15.63 8.73 -92.71 -0.81 14.82 16 24 H 0.11 5.16 4.68 -2.91 -0.01 5.15 16 25 H 0.14 4.73 8.06 -2.91 -0.02 4.71 16 26 H 0.13 4.68 5.75 -2.91 -0.02 4.67 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -66.99 283.91 3.86 -63.13 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.99 Total: 17.88 kcal Atomic # 6 Polarization: -59.39 SS G_CDS: 2.74 Total: -56.65 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.30 Total: -46.63 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -1.89 Total: -28.94 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.71 Total: 51.20 kcal Total: -66.99 3.86 -63.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044368411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.867 kcal (2) G-P(sol) polarization free energy of solvation -66.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds