Wall clock time and date at job start Mon Mar 30 2020 06:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47558 * 2 1 4 4 C 1.50707 * 109.46875 * 120.00326 * 2 1 3 5 5 H 1.07995 * 120.00296 * 120.00085 * 4 2 1 6 6 C 1.37876 * 119.99607 * 299.99424 * 4 2 1 7 7 N 1.31516 * 120.00184 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00040 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47137 * 90.00287 * 8 6 4 10 10 H 1.48503 * 109.47014 * 210.00457 * 8 6 4 11 11 H 1.48503 * 109.46688 * 330.00350 * 8 6 4 12 12 S 1.81404 * 109.47431 * 239.99811 * 2 1 3 13 13 C 1.76194 * 103.00117 * 171.85602 * 12 2 1 14 14 C 1.38993 * 120.11808 * 354.03913 * 13 12 2 15 15 C 1.37936 * 119.85150 * 179.97438 * 14 13 12 16 16 C 1.38589 * 120.32641 * 0.02562 * 15 14 13 17 17 C 1.38298 * 119.97588 * 359.97438 * 16 15 14 18 18 C 1.38358 * 119.93173 * 359.97438 * 17 16 15 19 19 C 1.51386 * 109.75286 * 179.97438 * 17 16 15 20 20 C 1.54338 * 105.16769 * 342.79471 * 19 17 16 21 21 C 1.51705 * 130.21513 * 179.77969 * 16 15 14 22 22 H 1.09004 * 109.47155 * 65.43871 * 1 2 3 23 23 H 1.09002 * 109.47104 * 185.43590 * 1 2 3 24 24 H 1.08996 * 109.47578 * 305.44031 * 1 2 3 25 25 H 0.97003 * 120.00166 * 179.97438 * 7 6 4 26 26 H 1.08002 * 120.07181 * 359.95848 * 14 13 12 27 27 H 1.08005 * 119.83939 * 179.97438 * 15 14 13 28 28 H 1.07991 * 119.92444 * 179.97438 * 18 17 16 29 29 H 1.09000 * 110.30283 * 223.87313 * 19 17 16 30 30 H 1.09005 * 110.30196 * 101.71560 * 19 17 16 31 31 H 1.09004 * 110.81794 * 144.61158 * 20 19 17 32 32 H 1.09007 * 110.81967 * 267.95517 * 20 19 17 33 33 H 1.09005 * 110.25147 * 78.31129 * 21 16 15 34 34 H 1.08998 * 110.49626 * 316.06660 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6531 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3223 -1.1196 4.0080 9 1 3.6302 -0.5441 4.4120 10 1 1.3442 -0.9490 5.1123 11 1 2.4878 -2.5654 3.7122 12 16 2.1347 -0.8552 -1.4811 13 6 3.8691 -0.5481 -1.4357 14 6 4.4016 0.3042 -0.4755 15 6 5.7603 0.5402 -0.4446 16 6 6.5973 -0.0678 -1.3668 17 6 6.0709 -0.9165 -2.3235 18 6 4.7089 -1.1575 -2.3582 19 6 7.1823 -1.4473 -3.2037 20 6 8.3759 -0.4990 -2.9631 21 6 8.1010 0.0329 -1.5403 22 1 -0.3634 0.4272 -0.9347 23 1 -0.3633 -1.0231 0.0974 24 1 -0.3634 0.5959 0.8372 25 1 0.7081 1.1609 3.4844 26 1 3.7530 0.7807 0.2446 27 1 6.1738 1.2029 0.3013 28 1 4.2979 -1.8198 -3.1056 29 1 6.8816 -1.4187 -4.2511 30 1 7.4427 -2.4647 -2.9118 31 1 9.3182 -1.0460 -2.9966 32 1 8.3764 0.3150 -3.6881 33 1 8.6086 -0.5857 -0.8001 34 1 8.4265 1.0696 -1.4551 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247820.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:45 Heat of formation + Delta-G solvation = 3.350148 kcal Electronic energy + Delta-G solvation = -15461.295124 eV Core-core repulsion = 13063.076076 eV Total energy + Delta-G solvation = -2398.219048 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52649 -35.30605 -34.08274 -31.01460 -30.35710 -28.64210 -26.98405 -25.34627 -22.67379 -21.04240 -20.62210 -20.54261 -16.55392 -16.29684 -15.52266 -15.46089 -14.73699 -14.61790 -13.76644 -13.21910 -13.04806 -12.81700 -12.69263 -12.39223 -11.86159 -11.61391 -11.40637 -11.09358 -11.01088 -10.90047 -10.86550 -10.50330 -10.47772 -10.32483 -10.03696 -9.35049 -8.96661 -8.76038 -8.48531 -8.20347 -6.51907 -6.12150 -4.27366 1.79073 1.92339 2.68632 3.22628 3.29529 3.34126 3.69870 4.20516 4.32597 4.68047 4.76019 5.04652 5.12586 5.38760 5.48915 5.51050 5.79474 5.80628 5.88298 5.90463 6.01309 6.18132 6.24750 6.42101 6.58586 6.60346 6.72721 6.77977 6.93062 7.03894 7.09749 7.31386 7.49415 7.58820 7.79716 8.01466 8.73904 9.37430 10.86123 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.026111 B = 0.006795 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.077879 B = 4119.593146 C = 4805.397755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.092 3.908 3 H 0.050 0.950 4 C -0.517 4.517 5 H 0.066 0.934 6 C 0.070 3.930 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.272 1.272 12 S -0.190 6.190 13 C -0.049 4.049 14 C -0.109 4.109 15 C -0.095 4.095 16 C -0.122 4.122 17 C -0.095 4.095 18 C -0.103 4.103 19 C -0.077 4.077 20 C -0.119 4.119 21 C -0.076 4.076 22 H 0.020 0.980 23 H 0.039 0.961 24 H 0.098 0.902 25 H 0.265 0.735 26 H 0.147 0.853 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.429 -1.026 -7.861 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.035 4.035 3 H 0.068 0.932 4 C -0.556 4.556 5 H 0.085 0.915 6 C -0.134 4.134 7 N -0.526 5.526 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.196 1.196 12 S 0.057 5.943 13 C -0.162 4.162 14 C -0.133 4.133 15 C -0.115 4.115 16 C -0.126 4.126 17 C -0.097 4.097 18 C -0.127 4.127 19 C -0.114 4.114 20 C -0.157 4.157 21 C -0.113 4.113 22 H 0.039 0.961 23 H 0.058 0.942 24 H 0.116 0.884 25 H 0.074 0.926 26 H 0.165 0.835 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.522 -1.529 -8.512 12.863 hybrid contribution 0.941 0.223 1.912 2.142 sum 10.462 -1.306 -6.600 12.439 Atomic orbital electron populations 1.21628 0.95106 1.01241 1.00412 1.21102 0.95998 0.96767 0.89665 0.93178 1.21256 1.32091 1.12962 0.89311 0.91546 1.24956 0.94667 0.94872 0.98926 1.69869 1.36043 1.22653 1.23988 0.86492 0.78645 0.80319 0.82145 1.20459 1.21015 1.19646 1.84798 0.98798 1.71881 1.38788 1.21559 0.97480 0.99179 0.98001 1.21532 0.95354 0.98107 0.98289 1.20511 0.92910 0.99946 0.98179 1.20494 0.95052 0.99694 0.97322 1.20286 0.93178 0.98519 0.97699 1.20141 0.91478 1.01355 0.99743 1.20977 0.92706 0.99013 0.98727 1.22270 0.97742 0.98928 0.96761 1.21013 0.92176 1.01233 0.96892 0.96096 0.94151 0.88401 0.92554 0.83505 0.86714 0.86613 0.91175 0.90681 0.91060 0.91248 0.90863 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 8.89 37.16 0.33 -2.59 16 2 C 0.09 2.26 2.01 -27.88 -0.06 2.21 16 3 H 0.05 1.31 6.97 -51.93 -0.36 0.94 16 4 C -0.52 -13.67 6.96 -34.44 -0.24 -13.91 16 5 H 0.07 1.83 7.71 -52.49 -0.40 1.42 16 6 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 7 N -0.89 -24.03 11.38 55.43 0.63 -23.40 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 S -0.19 -4.20 21.24 -107.50 -2.28 -6.49 16 13 C -0.05 -1.02 6.03 -39.08 -0.24 -1.26 16 14 C -0.11 -2.29 8.81 -39.41 -0.35 -2.64 16 15 C -0.10 -1.73 10.03 -39.56 -0.40 -2.13 16 16 C -0.12 -1.99 6.15 -103.97 -0.64 -2.63 16 17 C -0.10 -1.55 6.13 -104.22 -0.64 -2.19 16 18 C -0.10 -1.89 9.79 -39.31 -0.38 -2.27 16 19 C -0.08 -0.94 6.77 -26.85 -0.18 -1.12 16 20 C -0.12 -1.26 7.07 -25.32 -0.18 -1.44 16 21 C -0.08 -0.94 6.80 -26.68 -0.18 -1.12 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.10 2.47 6.23 -51.93 -0.32 2.14 16 25 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 26 H 0.15 3.40 5.13 -52.49 -0.27 3.13 16 27 H 0.11 1.85 8.06 -52.48 -0.42 1.42 16 28 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 289.81 15.07 4.37 4.37 Total: -1.00 -27.27 289.81 -10.27 -37.54 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.72 Total: 1.46 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -3.24 Total: -29.34 kcal Atomic # 7 Polarization: -24.03 SS G_CDS: 0.63 Total: -23.40 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -4.20 SS G_CDS: -2.28 Total: -6.49 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.27 -10.27 -37.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247820.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.891 kcal (2) G-P(sol) polarization free energy of solvation -27.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds