Wall clock time and date at job start Mon Mar 30 2020 06:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46625 * 2 1 4 4 C 1.50697 * 109.47060 * 240.00535 * 2 1 3 5 5 H 1.07997 * 120.00229 * 239.99850 * 4 2 1 6 6 C 1.37878 * 120.00108 * 59.99704 * 4 2 1 7 7 N 1.31512 * 119.99922 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00073 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47097 * 60.00003 * 8 6 4 10 10 H 1.48493 * 109.47399 * 180.02562 * 8 6 4 11 11 H 1.48509 * 109.47093 * 299.99995 * 8 6 4 12 12 S 1.81387 * 109.47223 * 120.00163 * 2 1 3 13 13 C 1.76203 * 103.00264 * 189.25786 * 12 2 1 14 14 C 1.38998 * 120.11402 * 5.96959 * 13 12 2 15 15 C 1.37937 * 119.85099 * 179.97438 * 14 13 12 16 16 C 1.38591 * 120.32351 * 0.02562 * 15 14 13 17 17 C 1.38304 * 119.97729 * 359.97438 * 16 15 14 18 18 C 1.38354 * 119.92961 * 359.97438 * 17 16 15 19 19 C 1.51388 * 109.74864 * 179.97438 * 17 16 15 20 20 C 1.54343 * 105.16990 * 342.80491 * 19 17 16 21 21 C 1.51698 * 130.21035 * 179.78448 * 16 15 14 22 22 H 1.08998 * 109.47185 * 293.81348 * 1 2 3 23 23 H 1.09000 * 109.47366 * 53.81048 * 1 2 3 24 24 H 1.08997 * 109.47096 * 173.81097 * 1 2 3 25 25 H 0.97006 * 119.99767 * 179.97438 * 7 6 4 26 26 H 1.07998 * 120.07606 * 0.02562 * 14 13 12 27 27 H 1.08003 * 119.83890 * 180.02562 * 15 14 13 28 28 H 1.07997 * 119.92464 * 179.97438 * 18 17 16 29 29 H 1.08996 * 110.29903 * 223.87972 * 19 17 16 30 30 H 1.08999 * 110.30087 * 101.72541 * 19 17 16 31 31 H 1.09003 * 110.82113 * 144.61154 * 20 19 17 32 32 H 1.09001 * 110.81402 * 267.94788 * 20 19 17 33 33 H 1.08997 * 110.25614 * 78.31781 * 21 16 15 34 34 H 1.09002 * 110.49769 * 316.06925 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8304 -2.6033 8 14 2.3212 -1.1200 -4.0081 9 1 1.8257 -2.5199 -4.0079 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1206 -4.0083 12 16 2.1346 -0.8551 1.4810 13 6 3.8644 -0.5204 1.4536 14 6 4.3920 0.3467 0.5039 15 6 5.7468 0.6053 0.4878 16 6 6.5849 0.0043 1.4136 17 6 6.0633 -0.8589 2.3599 18 6 4.7050 -1.1209 2.3811 19 6 7.1752 -1.3789 3.2460 20 6 8.4783 -1.0878 2.4718 21 6 8.0862 0.1218 1.5968 22 1 -0.3633 0.4149 0.9402 23 1 -0.3634 0.6068 -0.8294 24 1 -0.3633 -1.0216 -0.1108 25 1 0.7094 1.1620 -3.4844 26 1 3.7425 0.8175 -0.2192 27 1 6.1564 1.2794 -0.2500 28 1 4.2978 -1.7953 3.1199 29 1 7.0615 -2.4511 3.4055 30 1 7.1763 -0.8518 4.2001 31 1 9.2852 -0.8255 3.1561 32 1 8.7593 -1.9396 1.8525 33 1 8.3325 1.0532 2.1064 34 1 8.5934 0.0714 0.6332 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247824.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:07:48 Heat of formation + Delta-G solvation = -8.360218 kcal Electronic energy + Delta-G solvation = -15460.639152 eV Core-core repulsion = 13061.912304 eV Total energy + Delta-G solvation = -2398.726848 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.093 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.80442 -36.61018 -35.99888 -32.52283 -32.20498 -29.92173 -28.11249 -27.35730 -24.17793 -22.78420 -22.01617 -21.60899 -18.54921 -17.84784 -17.17659 -16.50670 -16.40080 -16.01699 -15.47977 -14.96248 -14.64943 -14.16082 -13.80483 -13.66032 -13.50845 -13.31811 -12.89647 -12.88299 -12.59277 -12.34689 -12.22395 -11.98206 -11.90557 -11.78118 -11.64152 -11.32437 -10.87315 -10.51834 -10.18803 -9.60618 -8.34643 -8.01880 -6.37040 0.34449 0.48013 1.00443 1.37864 1.38163 1.46107 1.87035 2.37069 2.76914 3.06302 3.59292 3.70797 4.11178 4.25060 4.25687 4.42421 4.51251 4.63536 4.71241 4.80088 4.80667 4.85914 4.93206 4.99631 5.11089 5.16961 5.30452 5.32395 5.39233 5.51303 5.52623 5.57602 5.70571 5.73908 6.00983 6.08455 6.64217 7.29435 8.82003 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.025539 B = 0.006839 C = 0.005853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.093251 B = 4093.075965 C = 4782.907795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.091 3.909 3 H 0.026 0.974 4 C -0.525 4.525 5 H 0.050 0.950 6 C 0.029 3.971 7 N -0.909 5.909 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.277 1.277 11 H -0.275 1.275 12 S -0.190 6.190 13 C -0.076 4.076 14 C -0.134 4.134 15 C -0.105 4.105 16 C -0.119 4.119 17 C -0.095 4.095 18 C -0.109 4.109 19 C -0.076 4.076 20 C -0.112 4.112 21 C -0.076 4.076 22 H 0.040 0.960 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.267 0.733 26 H 0.113 0.887 27 H 0.129 0.871 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.214 -1.842 8.797 15.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.037 4.037 3 H 0.044 0.956 4 C -0.564 4.564 5 H 0.068 0.932 6 C -0.172 4.172 7 N -0.547 5.547 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.202 1.202 11 H -0.200 1.200 12 S 0.056 5.944 13 C -0.189 4.189 14 C -0.157 4.157 15 C -0.125 4.125 16 C -0.122 4.122 17 C -0.097 4.097 18 C -0.133 4.133 19 C -0.113 4.113 20 C -0.150 4.150 21 C -0.113 4.113 22 H 0.059 0.941 23 H 0.097 0.903 24 H 0.055 0.945 25 H 0.077 0.923 26 H 0.131 0.869 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.121 0.879 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.326 -2.356 9.438 15.702 hybrid contribution 0.196 0.522 -2.096 2.169 sum 12.522 -1.834 7.342 14.631 Atomic orbital electron populations 1.21486 0.94529 1.00807 1.00556 1.20884 0.96512 0.95616 0.90649 0.95640 1.21251 1.32121 1.12563 0.90490 0.93173 1.25612 0.94837 0.95488 1.01296 1.69957 1.36691 1.23414 1.24678 0.85682 0.78738 0.78942 0.78851 1.19731 1.20192 1.19990 1.84493 1.01216 1.71387 1.37293 1.21631 0.96701 1.00846 0.99770 1.21310 0.96519 0.99233 0.98679 1.20707 0.92042 1.00490 0.99230 1.21069 0.97646 0.97764 0.95749 1.20878 0.93238 0.97769 0.97823 1.20354 0.92489 1.01264 0.99174 1.21129 0.90845 1.01692 0.97653 1.22320 0.96810 0.97435 0.98404 1.21162 0.88488 1.00273 1.01366 0.94148 0.90290 0.94452 0.92348 0.86871 0.85263 0.85419 0.89888 0.88823 0.87875 0.90777 0.89022 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.55 8.88 71.98 0.64 -4.91 16 2 C 0.09 4.69 2.00 29.85 0.06 4.75 16 3 H 0.03 1.42 6.90 -2.39 -0.02 1.41 16 4 C -0.53 -28.84 7.08 25.60 0.18 -28.66 16 5 H 0.05 2.86 7.71 -2.91 -0.02 2.83 16 6 C 0.03 1.59 5.30 84.66 0.45 2.04 16 7 N -0.91 -50.57 11.39 21.45 0.24 -50.32 16 8 Si 0.95 43.40 29.54 68.60 2.03 45.43 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 11 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 12 S -0.19 -8.67 21.24 -56.49 -1.20 -9.87 16 13 C -0.08 -3.28 6.04 22.59 0.14 -3.15 16 14 C -0.13 -5.84 8.84 22.38 0.20 -5.64 16 15 C -0.10 -3.79 10.03 22.28 0.22 -3.57 16 16 C -0.12 -3.62 6.15 -19.45 -0.12 -3.74 16 17 C -0.10 -2.88 6.13 -19.60 -0.12 -3.00 16 18 C -0.11 -3.92 9.79 22.44 0.22 -3.70 16 19 C -0.08 -1.53 6.77 30.52 0.21 -1.33 16 20 C -0.11 -1.82 7.07 31.51 0.22 -1.60 16 21 C -0.08 -1.55 6.80 30.63 0.21 -1.34 16 22 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 23 H 0.08 4.12 6.26 -2.39 -0.01 4.10 16 24 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.27 14.12 8.31 -92.70 -0.77 13.35 16 26 H 0.11 5.63 5.14 -2.91 -0.01 5.62 16 27 H 0.13 4.13 8.06 -2.91 -0.02 4.11 16 28 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -60.47 289.93 4.65 -55.82 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: 1.08 Total: 12.79 kcal Atomic # 6 Polarization: -56.34 SS G_CDS: 2.50 Total: -53.84 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: 0.24 Total: -50.32 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.20 Total: -9.87 kcal Total: -60.47 4.65 -55.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247824.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.455 kcal (2) G-P(sol) polarization free energy of solvation -60.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds