Wall clock time and date at job start Mon Mar 30 2020 06:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46936 * 2 1 4 4 H 1.08995 * 109.47599 * 56.18536 * 3 2 1 5 5 C 1.50700 * 109.46807 * 176.18931 * 3 2 1 6 6 H 1.08001 * 119.99964 * 115.11843 * 5 3 2 7 7 C 1.37871 * 120.00073 * 295.11411 * 5 3 2 8 8 N 1.31518 * 120.00047 * 348.23986 * 7 5 3 9 9 Si 1.86797 * 120.00305 * 168.23289 * 7 5 3 10 10 H 1.48500 * 109.46993 * 60.00280 * 9 7 5 11 11 H 1.48498 * 109.47561 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.47243 * 300.00670 * 9 7 5 13 13 N 1.46506 * 109.46831 * 296.18596 * 3 2 1 14 14 C 1.39841 * 119.99914 * 94.99419 * 13 3 2 15 15 C 1.39051 * 119.96706 * 6.70596 * 14 13 3 16 16 C 1.38153 * 120.27570 * 179.76468 * 15 14 13 17 17 C 1.38290 * 120.20032 * 0.51423 * 16 15 14 18 18 F 1.35098 * 120.03287 * 179.76954 * 17 16 15 19 19 C 1.39842 * 119.93193 * 359.73709 * 17 16 15 20 20 C 1.43200 * 120.13482 * 180.02562 * 19 17 16 21 21 N 7.80767 * 62.67772 * 317.20755 * 2 1 3 22 22 C 1.38526 * 119.96900 * 186.98166 * 14 13 3 23 23 H 1.09001 * 109.47090 * 185.22086 * 1 2 3 24 24 H 1.08998 * 109.47421 * 305.22410 * 1 2 3 25 25 H 1.09001 * 109.46957 * 65.22386 * 1 2 3 26 26 H 1.09001 * 109.47109 * 239.99550 * 2 1 3 27 27 H 1.08994 * 109.46653 * 120.00080 * 2 1 3 28 28 H 0.97003 * 119.99710 * 1.02245 * 8 7 5 29 29 H 0.96993 * 120.00149 * 274.98653 * 13 3 2 30 30 H 1.08006 * 119.86709 * 359.97438 * 15 14 13 31 31 H 1.07997 * 119.90078 * 180.23079 * 16 15 14 32 32 H 1.07995 * 120.09843 * 359.95043 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6219 1.9757 0.8538 5 6 3.5440 1.4435 0.0944 6 1 4.1363 1.8221 -0.7255 7 6 4.1639 0.9613 1.2276 8 7 3.4580 0.7176 2.3102 9 14 6.0064 0.6539 1.2253 10 1 6.7199 1.9245 0.9393 11 1 6.4242 0.1394 2.5542 12 1 6.3400 -0.3471 0.1802 13 7 1.6280 2.1060 -1.2395 14 6 0.4584 2.8721 -1.2672 15 6 -0.2379 3.1193 -0.0892 16 6 -1.3914 3.8794 -0.1084 17 6 -1.8676 4.3910 -1.3017 18 9 -2.9985 5.1299 -1.3173 19 6 -1.1769 4.1432 -2.4922 20 6 -1.6658 4.6713 -3.7302 21 7 -2.0537 5.0902 -4.7124 22 6 -0.0084 3.3791 -2.4688 23 1 -0.3633 -1.0234 0.0935 24 1 -0.3634 0.5927 0.8395 25 1 -0.3633 0.4307 -0.9331 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 2.4990 0.8630 2.3067 29 1 2.1666 2.0141 -2.0410 30 1 0.1263 2.7184 0.8452 31 1 -1.9254 4.0707 0.8106 32 1 0.5299 3.1844 -3.3845 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051636594.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:32 Heat of formation + Delta-G solvation = -13.960459 kcal Electronic energy + Delta-G solvation = -17289.126061 eV Core-core repulsion = 14356.235944 eV Total energy + Delta-G solvation = -2932.890118 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.82962 -40.62671 -38.25051 -37.24904 -34.66367 -32.99944 -32.37864 -30.08146 -27.55663 -25.48013 -24.74132 -23.30189 -21.88101 -19.91512 -19.29598 -18.31385 -17.43146 -17.19867 -16.66862 -16.00830 -15.61211 -15.23880 -15.02891 -14.80275 -14.69835 -14.41916 -14.22681 -14.00876 -13.78621 -13.67290 -13.27192 -13.08149 -12.54349 -12.40698 -12.18283 -12.07952 -11.92536 -11.56107 -11.05228 -10.47293 -10.32046 -10.10494 -8.59124 -8.17248 -6.29610 -0.32855 0.39048 1.45602 1.60413 1.64587 1.83789 1.87777 2.49987 2.62821 2.78746 2.90505 3.20934 3.27207 3.81137 4.09943 4.28366 4.39727 4.46777 4.51066 4.63578 4.78093 4.92899 5.02596 5.16259 5.21290 5.26610 5.30149 5.39295 5.64799 5.68780 5.93933 6.11473 6.28641 6.56193 6.70513 7.04808 7.47163 8.81307 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.034489 B = 0.005290 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.647034 B = 5291.433656 C = 5534.267833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.265 3.735 4 H 0.026 0.974 5 C -0.625 4.625 6 H 0.051 0.949 7 C -0.013 4.013 8 N -0.926 5.926 9 Si 1.106 2.894 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.716 5.716 14 C 0.219 3.781 15 C -0.150 4.150 16 C -0.087 4.087 17 C 0.061 3.939 18 F -0.145 7.145 19 C -0.016 4.016 20 C 0.279 3.721 21 N -0.448 5.448 22 C -0.131 4.131 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.042 0.958 28 H 0.265 0.735 29 H 0.400 0.600 30 H 0.133 0.867 31 H 0.165 0.835 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 2.395 -4.175 8.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.161 3.839 4 H 0.044 0.956 5 C -0.663 4.663 6 H 0.069 0.931 7 C -0.215 4.215 8 N -0.562 5.562 9 Si 0.930 3.070 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.339 5.339 14 C 0.111 3.889 15 C -0.174 4.174 16 C -0.106 4.106 17 C 0.036 3.964 18 F -0.124 7.124 19 C -0.021 4.021 20 C -0.036 4.036 21 N -0.124 5.124 22 C -0.157 4.157 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.235 0.765 30 H 0.151 0.849 31 H 0.182 0.818 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.876 2.447 -4.567 7.834 hybrid contribution -0.994 0.373 -0.740 1.294 sum -6.870 2.820 -5.307 9.128 Atomic orbital electron populations 1.21773 0.95434 1.01013 1.01380 1.21912 0.95342 0.99201 1.00186 1.18633 0.93478 0.88778 0.83046 0.95628 1.22389 0.92401 1.46250 1.05267 0.93074 1.26818 1.09906 0.93217 0.91510 1.70928 1.09126 1.47405 1.28755 0.83036 0.70673 0.77251 0.76087 1.20246 1.21437 1.19927 1.45062 1.22870 1.52020 1.13989 1.17906 0.87423 0.90345 0.93252 1.20988 0.96470 1.02093 0.97852 1.20932 0.96122 0.96518 0.97077 1.17322 0.86017 0.99541 0.93482 1.91465 1.48653 1.75009 1.97279 1.15595 0.97642 1.03388 0.85489 1.25573 0.92671 0.92687 0.92634 1.81204 1.09252 1.10113 1.11860 1.20426 0.95973 1.01457 0.97795 0.93066 0.93036 0.92627 0.93744 0.93900 0.92480 0.76496 0.84929 0.81752 0.83015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 8.61 71.98 0.62 -3.75 16 2 C -0.13 -4.97 5.34 30.59 0.16 -4.81 16 3 C 0.27 10.89 1.80 44.24 0.08 10.97 16 4 H 0.03 1.15 5.00 -2.39 -0.01 1.14 16 5 C -0.62 -30.11 8.68 25.60 0.22 -29.89 16 6 H 0.05 2.46 7.84 -2.91 -0.02 2.44 16 7 C -0.01 -0.67 5.13 84.65 0.43 -0.24 16 8 N -0.93 -49.85 12.98 21.45 0.28 -49.57 16 9 Si 1.11 45.55 29.92 68.60 2.05 47.60 16 10 H -0.28 -10.82 7.11 99.48 0.71 -10.12 16 11 H -0.29 -12.17 7.11 99.48 0.71 -11.46 16 12 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 13 N -0.72 -23.80 4.93 -322.56 -1.59 -25.39 16 14 C 0.22 6.27 5.38 38.13 0.21 6.48 16 15 C -0.15 -4.15 7.90 22.44 0.18 -3.97 16 16 C -0.09 -2.04 10.00 22.26 0.22 -1.81 16 17 C 0.06 1.52 7.27 22.67 0.16 1.69 16 18 F -0.15 -3.84 16.80 44.97 0.76 -3.09 16 19 C -0.02 -0.41 5.74 -21.31 -0.12 -0.53 16 20 C 0.28 7.77 14.97 88.33 1.32 9.09 16 21 N -0.45 -13.96 18.54 19.00 0.35 -13.61 16 22 C -0.13 -3.24 9.60 22.68 0.22 -3.02 16 23 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.05 1.57 7.10 -2.39 -0.02 1.55 16 25 H 0.05 1.64 6.91 -2.39 -0.02 1.63 16 26 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.04 1.92 6.52 -2.39 -0.02 1.91 16 28 H 0.26 14.07 6.26 -92.71 -0.58 13.49 16 29 H 0.40 12.42 8.71 -92.71 -0.81 11.61 16 30 H 0.13 4.01 5.28 -2.91 -0.02 3.99 16 31 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 32 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -54.38 280.93 6.10 -48.28 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.55 Total: 15.58 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 3.71 Total: -19.81 kcal Atomic # 7 Polarization: -87.60 SS G_CDS: -0.96 Total: -88.56 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 0.76 Total: -3.09 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.05 Total: 47.60 kcal Total: -54.38 6.10 -48.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051636594.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.320 kcal (2) G-P(sol) polarization free energy of solvation -54.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds