Wall clock time and date at job start Mon Mar 30 2020 06:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00459 * 2 1 4 4 H 1.48501 * 109.47408 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47122 * 300.00306 * 3 2 1 6 6 H 1.48497 * 109.46893 * 60.00181 * 3 2 1 7 7 C 1.37889 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99676 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99691 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46832 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47314 * 180.02562 * 10 9 7 12 12 C 1.35904 * 117.00158 * 179.97438 * 11 10 9 13 13 C 1.38644 * 119.94871 * 359.97438 * 12 11 10 14 14 C 1.38121 * 119.86771 * 179.97438 * 13 12 11 15 15 C 1.38171 * 119.99906 * 359.97438 * 14 13 12 16 16 C 1.38495 * 120.33447 * 0.02562 * 15 14 13 17 17 C 1.38166 * 119.88272 * 359.97438 * 16 15 14 18 18 C 1.51361 * 109.78111 * 179.97438 * 17 16 15 19 19 C 1.54347 * 105.16344 * 17.18265 * 18 17 16 20 20 C 1.51375 * 130.36413 * 179.97438 * 16 15 14 21 21 H 1.08998 * 110.30600 * 281.86070 * 20 16 15 22 22 O 1.42905 * 110.30247 * 43.91437 * 20 16 15 23 23 H 0.96998 * 119.99353 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47367 * 60.00557 * 9 7 2 25 25 H 1.08996 * 109.47358 * 299.99854 * 9 7 2 26 26 H 1.09001 * 109.47744 * 59.99709 * 10 9 7 27 27 H 1.09005 * 109.46761 * 299.99922 * 10 9 7 28 28 H 1.07990 * 120.06518 * 359.95682 * 13 12 11 29 29 H 1.07999 * 119.99876 * 180.02562 * 14 13 12 30 30 H 1.08009 * 119.83092 * 179.97438 * 15 14 13 31 31 H 1.09000 * 110.30482 * 136.09900 * 18 17 16 32 32 H 1.08999 * 110.30740 * 258.16060 * 18 17 16 33 33 H 1.09003 * 110.82334 * 215.43941 * 19 18 17 34 34 H 1.09003 * 110.82518 * 91.88239 * 19 18 17 35 35 H 0.96696 * 114.00036 * 298.54386 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 8 1.5305 -4.8997 -0.0011 12 6 2.2707 -6.0395 -0.0018 13 6 3.6551 -5.9658 -0.0023 14 6 4.4057 -7.1253 -0.0024 15 6 3.7766 -8.3554 -0.0014 16 6 2.3938 -8.4339 -0.0008 17 6 1.6387 -7.2769 -0.0007 18 6 0.1660 -7.6264 -0.0007 19 6 0.1018 -9.1045 0.4393 20 6 1.4804 -9.6410 -0.0003 21 1 1.4193 -10.0696 -1.0006 22 8 1.9515 -10.6189 0.9293 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8718 -3.6046 0.8894 27 1 2.8717 -3.6044 -0.8906 28 1 4.1457 -5.0037 -0.0030 29 1 5.4843 -7.0703 -0.0024 30 1 4.3662 -9.2604 -0.0019 31 1 -0.3721 -6.9971 0.7082 32 1 -0.2506 -7.5097 -1.0012 33 1 -0.7014 -9.6285 -0.0788 34 1 -0.0171 -9.1823 1.5200 35 1 2.8332 -10.9608 0.7274 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062800894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:43 Heat of formation + Delta-G solvation = -78.166140 kcal Electronic energy + Delta-G solvation = -17354.268232 eV Core-core repulsion = 14509.761502 eV Total energy + Delta-G solvation = -2844.506731 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.44832 -38.33477 -36.26902 -34.55297 -33.39176 -30.71437 -29.51026 -28.77611 -26.46435 -25.02250 -22.40754 -21.80726 -20.69341 -20.13386 -17.82437 -17.30815 -16.28816 -15.87315 -15.47459 -15.31904 -15.05656 -14.57458 -13.98096 -13.82997 -13.02652 -12.77759 -12.68714 -12.34229 -12.05281 -11.77530 -11.55624 -11.48716 -11.20562 -10.98332 -10.85463 -10.75907 -10.53088 -10.19011 -9.87845 -9.67331 -9.30488 -8.57150 -8.47016 -7.82699 -6.12245 -4.16868 1.36696 1.60737 3.25289 3.32410 3.35939 3.79530 3.81252 4.12447 4.38121 4.39581 4.62236 4.91368 5.07790 5.10800 5.20801 5.24371 5.38544 5.52447 5.63741 5.78989 5.85755 5.88748 6.00751 6.06193 6.13900 6.22046 6.48142 6.52725 6.57609 6.68258 6.92590 7.44049 7.48267 7.61885 7.78871 8.02881 8.21874 8.88875 9.47615 10.99375 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.043924 B = 0.004229 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.308642 B = 6619.946062 C = 7183.476399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.064 3.936 11 O -0.313 6.313 12 C 0.158 3.842 13 C -0.208 4.208 14 C -0.081 4.081 15 C -0.151 4.151 16 C -0.103 4.103 17 C -0.130 4.130 18 C -0.072 4.072 19 C -0.111 4.111 20 C 0.147 3.853 21 H 0.072 0.928 22 O -0.560 6.560 23 H 0.263 0.737 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 -18.233 -0.887 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.010 4.010 11 O -0.226 6.226 12 C 0.110 3.890 13 C -0.226 4.226 14 C -0.099 4.099 15 C -0.170 4.170 16 C -0.103 4.103 17 C -0.131 4.131 18 C -0.109 4.109 19 C -0.148 4.148 20 C 0.088 3.912 21 H 0.090 0.910 22 O -0.365 6.365 23 H 0.073 0.927 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.151 0.849 29 H 0.142 0.858 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.125 -17.945 -0.613 18.423 hybrid contribution 1.394 1.080 -0.314 1.791 sum 5.519 -16.865 -0.927 17.769 Atomic orbital electron populations 1.69986 1.06109 1.26875 1.49745 1.24993 0.94904 0.99396 0.94881 0.86431 0.79979 0.83241 0.77738 1.19642 1.20823 1.20813 1.21012 0.93082 0.90206 1.52190 0.92320 1.19121 0.94158 0.89002 0.98866 1.23348 0.97133 0.80880 0.99638 1.86183 1.36489 1.13121 1.86816 1.18791 0.89910 0.86450 0.93802 1.21312 0.92776 1.00004 1.08553 1.20781 0.99437 0.91652 0.98020 1.20289 0.92735 0.97582 1.06345 1.20993 0.93874 0.95684 0.99790 1.19689 0.96462 0.90381 1.06542 1.20872 0.92338 0.95094 1.02551 1.22352 0.94588 0.95001 1.02878 1.21347 0.92412 0.85047 0.92362 0.91039 1.86545 1.37739 1.58703 1.53518 0.92746 0.95397 0.95397 0.93126 0.93140 0.84857 0.85829 0.86704 0.89919 0.90068 0.89987 0.89797 0.77672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.19 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.67 5.34 -27.88 -0.15 0.52 16 10 C 0.06 1.38 4.68 37.16 0.17 1.55 16 11 O -0.31 -6.50 10.08 -19.44 -0.20 -6.70 16 12 C 0.16 2.82 6.69 -39.17 -0.26 2.56 16 13 C -0.21 -3.30 9.03 -39.47 -0.36 -3.66 16 14 C -0.08 -1.07 10.04 -39.65 -0.40 -1.46 16 15 C -0.15 -1.87 9.93 -39.51 -0.39 -2.26 16 16 C -0.10 -1.39 5.82 -104.22 -0.61 -1.99 16 17 C -0.13 -2.06 6.11 -104.06 -0.64 -2.69 16 18 C -0.07 -0.96 6.71 -26.85 -0.18 -1.14 16 19 C -0.11 -1.24 6.80 -25.33 -0.17 -1.41 16 20 C 0.15 1.64 4.23 -26.86 -0.11 1.53 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 O -0.56 -6.04 13.36 -35.23 -0.47 -6.52 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.05 1.04 7.66 -51.93 -0.40 0.64 16 27 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 28 H 0.13 2.06 6.29 -52.49 -0.33 1.73 16 29 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.11 1.05 8.06 -52.48 -0.42 0.63 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.99 8.11 -51.93 -0.42 0.57 16 35 H 0.38 2.54 9.01 45.56 0.41 2.95 16 LS Contribution 297.26 15.07 4.48 4.48 Total: -1.00 -31.48 297.26 -8.03 -39.51 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -4.06 Total: 0.53 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -3.50 Total: -21.84 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.66 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.67 Total: -13.21 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.48 -8.03 -39.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062800894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.658 kcal (2) G-P(sol) polarization free energy of solvation -31.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds