Wall clock time and date at job start Mon Mar 30 2020 06:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00459 * 2 1 4 4 H 1.48501 * 109.47408 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47122 * 300.00306 * 3 2 1 6 6 H 1.48497 * 109.46893 * 60.00181 * 3 2 1 7 7 C 1.37889 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99676 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99691 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46832 * 180.02562 * 9 7 2 11 11 O 1.42895 * 109.47314 * 180.02562 * 10 9 7 12 12 C 1.35904 * 117.00158 * 179.97438 * 11 10 9 13 13 C 1.38644 * 119.94871 * 359.97438 * 12 11 10 14 14 C 1.38121 * 119.86771 * 179.97438 * 13 12 11 15 15 C 1.38171 * 119.99906 * 359.97438 * 14 13 12 16 16 C 1.38495 * 120.33447 * 0.02562 * 15 14 13 17 17 C 1.38166 * 119.88272 * 359.97438 * 16 15 14 18 18 C 1.51361 * 109.78111 * 179.97438 * 17 16 15 19 19 C 1.54347 * 105.16344 * 17.18265 * 18 17 16 20 20 C 1.51375 * 130.36413 * 179.97438 * 16 15 14 21 21 H 1.08998 * 110.30600 * 281.86070 * 20 16 15 22 22 O 1.42905 * 110.30247 * 43.91437 * 20 16 15 23 23 H 0.96998 * 119.99353 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47367 * 60.00557 * 9 7 2 25 25 H 1.08996 * 109.47358 * 299.99854 * 9 7 2 26 26 H 1.09001 * 109.47744 * 59.99709 * 10 9 7 27 27 H 1.09005 * 109.46761 * 299.99922 * 10 9 7 28 28 H 1.07990 * 120.06518 * 359.95682 * 13 12 11 29 29 H 1.07999 * 119.99876 * 180.02562 * 14 13 12 30 30 H 1.08009 * 119.83092 * 179.97438 * 15 14 13 31 31 H 1.09000 * 110.30482 * 136.09900 * 18 17 16 32 32 H 1.08999 * 110.30740 * 258.16060 * 18 17 16 33 33 H 1.09003 * 110.82334 * 215.43941 * 19 18 17 34 34 H 1.09003 * 110.82518 * 91.88239 * 19 18 17 35 35 H 0.96696 * 114.00036 * 298.54386 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 8 1.5305 -4.8997 -0.0011 12 6 2.2707 -6.0395 -0.0018 13 6 3.6551 -5.9658 -0.0023 14 6 4.4057 -7.1253 -0.0024 15 6 3.7766 -8.3554 -0.0014 16 6 2.3938 -8.4339 -0.0008 17 6 1.6387 -7.2769 -0.0007 18 6 0.1660 -7.6264 -0.0007 19 6 0.1018 -9.1045 0.4393 20 6 1.4804 -9.6410 -0.0003 21 1 1.4193 -10.0696 -1.0006 22 8 1.9515 -10.6189 0.9293 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.8718 -3.6046 0.8894 27 1 2.8717 -3.6044 -0.8906 28 1 4.1457 -5.0037 -0.0030 29 1 5.4843 -7.0703 -0.0024 30 1 4.3662 -9.2604 -0.0019 31 1 -0.3721 -6.9971 0.7082 32 1 -0.2506 -7.5097 -1.0012 33 1 -0.7014 -9.6285 -0.0788 34 1 -0.0171 -9.1823 1.5200 35 1 2.8332 -10.9608 0.7274 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062800894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:43 Heat of formation + Delta-G solvation = -98.993641 kcal Electronic energy + Delta-G solvation = -17355.171381 eV Core-core repulsion = 14509.761502 eV Total energy + Delta-G solvation = -2845.409879 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.58602 -39.62499 -37.32256 -35.52076 -35.47241 -32.52548 -30.76856 -29.95170 -27.48292 -26.94938 -23.79374 -23.20868 -21.82631 -21.45808 -19.15414 -18.39319 -18.02891 -17.18635 -17.00279 -16.54404 -16.41806 -16.14847 -15.12675 -14.92683 -14.36495 -14.25554 -14.09082 -13.87588 -13.28637 -13.17991 -12.93727 -12.74139 -12.54953 -12.51827 -12.36453 -12.03297 -11.88331 -11.60024 -11.57567 -11.41217 -11.03604 -10.64663 -9.64755 -9.08170 -8.28602 -6.42517 0.26490 0.46262 1.40019 1.41003 1.54502 2.25768 2.50111 2.70336 3.05943 3.29115 3.41155 3.67184 3.96632 4.01879 4.10647 4.22927 4.24996 4.29213 4.41544 4.53548 4.63681 4.69917 4.79590 4.87720 4.98249 5.14860 5.19662 5.29660 5.41051 5.43799 5.45233 5.51395 5.66355 5.86801 6.05347 6.52328 6.72260 6.85734 7.27837 8.84805 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.043924 B = 0.004229 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.308642 B = 6619.946062 C = 7183.476399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.977 3.023 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.030 3.970 10 C 0.084 3.916 11 O -0.339 6.339 12 C 0.113 3.887 13 C -0.221 4.221 14 C -0.080 4.080 15 C -0.140 4.140 16 C -0.104 4.104 17 C -0.153 4.153 18 C -0.076 4.076 19 C -0.106 4.106 20 C 0.153 3.847 21 H 0.097 0.903 22 O -0.569 6.569 23 H 0.267 0.733 24 H -0.002 1.002 25 H -0.003 1.003 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.130 0.870 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.310 -19.928 -1.159 21.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.800 3.200 4 H -0.181 1.181 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.585 4.585 8 H 0.088 0.912 9 C -0.008 4.008 10 C 0.010 3.990 11 O -0.253 6.253 12 C 0.068 3.932 13 C -0.240 4.240 14 C -0.098 4.098 15 C -0.158 4.158 16 C -0.105 4.105 17 C -0.154 4.154 18 C -0.113 4.113 19 C -0.143 4.143 20 C 0.095 3.905 21 H 0.115 0.885 22 O -0.378 6.378 23 H 0.076 0.924 24 H 0.017 0.983 25 H 0.015 0.985 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.148 0.852 29 H 0.174 0.826 30 H 0.175 0.825 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 6.375 -19.678 -0.885 20.704 hybrid contribution 0.712 1.446 -0.220 1.627 sum 7.087 -18.232 -1.105 19.592 Atomic orbital electron populations 1.70128 1.08069 1.28199 1.50582 1.26048 0.95825 1.03697 0.94069 0.85222 0.79023 0.77798 0.77924 1.18141 1.20149 1.20198 1.21427 0.93816 0.91013 1.52211 0.91153 1.18951 0.94500 0.91373 0.95936 1.22859 0.95447 0.80369 1.00337 1.86091 1.37392 1.13652 1.88214 1.19204 0.91015 0.85881 0.97087 1.21465 0.92161 1.01244 1.09103 1.21197 1.00998 0.90929 0.96694 1.20820 0.92631 0.98878 1.03449 1.21460 0.94709 0.95716 0.98612 1.20095 0.98001 0.90511 1.06822 1.20934 0.91236 0.96694 1.02399 1.22356 0.96062 0.93302 1.02626 1.21341 0.91272 0.84323 0.93601 0.88508 1.86522 1.39349 1.58258 1.53648 0.92408 0.98316 0.98454 0.92423 0.92239 0.85188 0.82552 0.82464 0.91865 0.89617 0.87396 0.90680 0.75472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.94 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.98 43.66 29.54 68.60 2.03 45.69 16 4 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.55 -31.21 9.11 25.60 0.23 -30.97 16 8 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 9 C 0.03 1.65 5.34 29.85 0.16 1.81 16 10 C 0.08 3.79 4.68 71.98 0.34 4.13 16 11 O -0.34 -14.94 10.08 -92.47 -0.93 -15.87 16 12 C 0.11 4.18 6.69 22.54 0.15 4.33 16 13 C -0.22 -6.95 9.03 22.34 0.20 -6.75 16 14 C -0.08 -1.91 10.04 22.23 0.22 -1.68 16 15 C -0.14 -2.95 9.93 22.32 0.22 -2.72 16 16 C -0.10 -2.58 5.82 -19.61 -0.11 -2.69 16 17 C -0.15 -4.87 6.11 -19.50 -0.12 -4.98 16 18 C -0.08 -2.07 6.71 30.52 0.20 -1.87 16 19 C -0.11 -2.22 6.80 31.50 0.21 -2.00 16 20 C 0.15 2.96 4.23 30.51 0.13 3.09 16 21 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 22 O -0.57 -10.23 13.36 -148.98 -1.99 -12.22 16 23 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 24 H 0.00 -0.10 8.14 -2.39 -0.02 -0.11 16 25 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 26 H 0.06 2.46 7.66 -2.39 -0.02 2.44 16 27 H 0.06 2.52 7.65 -2.38 -0.02 2.50 16 28 H 0.13 4.03 6.29 -2.92 -0.02 4.01 16 29 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 1.69 8.11 -2.39 -0.02 1.67 16 35 H 0.40 3.56 9.01 -74.06 -0.67 2.89 16 Total: -1.00 -70.58 297.26 2.11 -68.46 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.42 Total: 10.33 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 2.30 Total: -39.73 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -2.92 Total: -28.10 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -70.58 2.11 -68.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062800894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.529 kcal (2) G-P(sol) polarization free energy of solvation -70.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds