Wall clock time and date at job start Mon Mar 30 2020 06:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 O 1.42893 * 109.47427 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00473 * 179.97438 * 11 10 9 13 13 C 1.38651 * 119.94641 * 359.72910 * 12 11 10 14 14 C 1.38118 * 119.86894 * 179.74414 * 13 12 11 15 15 C 1.38169 * 120.00065 * 0.52515 * 14 13 12 16 16 C 1.38496 * 120.32840 * 359.72289 * 15 14 13 17 17 C 1.38172 * 119.88639 * 0.02734 * 16 15 14 18 18 C 1.51363 * 109.77758 * 179.97438 * 17 16 15 19 19 C 1.54349 * 105.16906 * 342.82171 * 18 17 16 20 20 C 1.51382 * 130.36257 * 180.02562 * 16 15 14 21 21 H 1.08996 * 110.30698 * 78.29065 * 20 16 15 22 22 O 1.42902 * 110.30474 * 316.23846 * 20 16 15 23 23 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 25 25 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 26 26 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 27 27 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 28 28 H 1.08004 * 120.06393 * 359.97438 * 13 12 11 29 29 H 1.08003 * 119.99908 * 180.24456 * 14 13 12 30 30 H 1.07992 * 119.83552 * 179.74291 * 15 14 13 31 31 H 1.09002 * 110.30055 * 101.73999 * 18 17 16 32 32 H 1.08992 * 110.30296 * 223.89415 * 18 17 16 33 33 H 1.09000 * 110.81856 * 268.11567 * 19 18 17 34 34 H 1.08995 * 110.82296 * 144.56368 * 19 18 17 35 35 H 0.96698 * 113.99742 * 61.44943 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 8 5.4506 -2.6364 -0.0009 12 6 6.0677 -3.8473 -0.0003 13 6 5.3116 -5.0094 0.0060 14 6 5.9403 -6.2392 0.0013 15 6 7.3202 -6.3096 0.0013 16 6 8.0796 -5.1513 0.0003 17 6 7.4552 -3.9187 -0.0002 18 6 8.4943 -2.8182 -0.0007 19 6 9.8065 -3.5015 0.4396 20 6 9.5817 -4.9638 -0.0004 21 1 9.9824 -5.1235 -1.0014 22 8 10.1940 -5.8623 0.9269 23 1 -0.4849 0.8401 -0.0004 24 1 3.8746 -0.6800 -0.8911 25 1 3.8753 -0.6803 0.8889 26 1 3.6586 -3.1501 0.8892 27 1 3.6580 -3.1504 -0.8907 28 1 4.2330 -4.9532 0.0107 29 1 5.3534 -7.1458 0.0021 30 1 7.8091 -7.2725 0.0019 31 1 8.6027 -2.4008 -1.0018 32 1 8.2184 -2.0372 0.7077 33 1 9.9332 -3.4368 1.5202 34 1 10.6618 -3.0681 -0.0787 35 1 10.0490 -6.7965 0.7236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062800895.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:46 Heat of formation + Delta-G solvation = -74.462386 kcal Electronic energy + Delta-G solvation = -17406.572440 eV Core-core repulsion = 14562.226316 eV Total energy + Delta-G solvation = -2844.346124 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51596 -38.42749 -36.33610 -34.61167 -33.36609 -31.04404 -29.65797 -28.93543 -26.52783 -25.20661 -22.40902 -21.66040 -20.72193 -20.11631 -17.92391 -17.39477 -16.68315 -15.92309 -15.60545 -15.39455 -15.15241 -14.27365 -14.07461 -13.88901 -13.08203 -12.99474 -12.86973 -12.51586 -12.11459 -11.91155 -11.68767 -11.62394 -11.33105 -11.01994 -10.83226 -10.80078 -10.28863 -10.15826 -10.02122 -9.83919 -9.37190 -8.64840 -8.62168 -7.90509 -6.15840 -4.16961 1.31375 1.54667 3.26810 3.34128 3.39266 3.70670 3.74561 4.07225 4.32636 4.36966 4.55799 4.85759 5.02388 5.05510 5.15807 5.18303 5.32145 5.46166 5.58123 5.73183 5.79588 5.81059 5.88487 5.95309 6.06880 6.14412 6.36076 6.46851 6.49439 6.56185 6.82639 7.06377 7.20150 7.39787 7.59690 7.86457 8.36210 8.84670 9.44387 10.96695 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.037823 B = 0.004630 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.109546 B = 6046.303632 C = 6714.473391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.263 1.263 6 H -0.286 1.286 7 C -0.528 4.528 8 H 0.074 0.926 9 C -0.008 4.008 10 C 0.071 3.929 11 O -0.317 6.317 12 C 0.157 3.843 13 C -0.206 4.206 14 C -0.080 4.080 15 C -0.149 4.149 16 C -0.103 4.103 17 C -0.130 4.130 18 C -0.071 4.071 19 C -0.111 4.111 20 C 0.147 3.853 21 H 0.072 0.928 22 O -0.559 6.559 23 H 0.266 0.734 24 H 0.028 0.972 25 H 0.023 0.977 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.135 0.865 29 H 0.125 0.875 30 H 0.116 0.884 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.215 -11.064 -0.907 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.707 3.293 4 H -0.200 1.200 5 H -0.188 1.188 6 H -0.211 1.211 7 C -0.566 4.566 8 H 0.092 0.908 9 C -0.045 4.045 10 C -0.003 4.003 11 O -0.230 6.230 12 C 0.110 3.890 13 C -0.225 4.225 14 C -0.098 4.098 15 C -0.168 4.168 16 C -0.103 4.103 17 C -0.131 4.131 18 C -0.108 4.108 19 C -0.148 4.148 20 C 0.088 3.912 21 H 0.090 0.910 22 O -0.365 6.365 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.153 0.847 29 H 0.143 0.857 30 H 0.134 0.866 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 18.306 -10.164 -0.635 20.948 hybrid contribution -0.331 0.096 -0.292 0.452 sum 17.975 -10.068 -0.927 20.623 Atomic orbital electron populations 1.69893 1.06284 1.27243 1.50135 1.24932 0.94757 0.99209 0.94068 0.86757 0.80443 0.83274 0.78792 1.20030 1.18766 1.21144 1.20840 0.88330 0.94950 1.52443 0.90756 1.19578 0.96911 0.90181 0.97878 1.23097 0.74667 1.02019 1.00495 1.86128 1.23958 1.25849 1.87104 1.18737 0.90670 0.85442 0.94176 1.21339 1.00741 0.92113 1.08264 1.20801 0.94034 0.97120 0.97855 1.20306 0.93536 0.96835 1.06085 1.20999 0.96369 0.93189 0.99791 1.19675 0.90838 0.95969 1.06611 1.20871 0.91122 0.96383 1.02457 1.22356 0.97739 0.91848 1.02889 1.21347 0.86653 0.90747 0.92428 0.91018 1.86542 1.76767 1.19598 1.53585 0.92421 0.95418 0.95850 0.92523 0.92489 0.84704 0.85706 0.86630 0.90108 0.90010 0.89788 0.89985 0.77612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.26 -6.23 6.54 56.52 0.37 -5.87 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.01 -0.19 4.41 -27.88 -0.12 -0.32 16 10 C 0.07 1.47 4.68 37.16 0.17 1.64 16 11 O -0.32 -6.21 10.08 -19.43 -0.20 -6.41 16 12 C 0.16 2.69 6.69 -39.17 -0.26 2.42 16 13 C -0.21 -3.17 9.03 -39.47 -0.36 -3.53 16 14 C -0.08 -1.03 10.04 -39.65 -0.40 -1.42 16 15 C -0.15 -1.78 9.93 -39.51 -0.39 -2.17 16 16 C -0.10 -1.33 5.82 -104.22 -0.61 -1.94 16 17 C -0.13 -1.97 6.11 -104.06 -0.64 -2.60 16 18 C -0.07 -0.91 6.71 -26.85 -0.18 -1.09 16 19 C -0.11 -1.18 6.80 -25.31 -0.17 -1.35 16 20 C 0.15 1.57 4.22 -26.84 -0.11 1.46 16 21 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 22 O -0.56 -5.81 13.36 -35.23 -0.47 -6.29 16 23 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 25 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 26 H 0.06 1.13 7.64 -51.93 -0.40 0.73 16 27 H 0.06 1.13 7.67 -51.93 -0.40 0.73 16 28 H 0.14 2.04 6.29 -52.48 -0.33 1.71 16 29 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 30 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.38 2.40 9.01 45.56 0.41 2.81 16 LS Contribution 293.67 15.07 4.43 4.43 Total: -1.00 -31.76 293.67 -7.66 -39.42 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -4.03 Total: 0.52 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -3.50 Total: -22.07 kcal Atomic # 7 Polarization: -27.20 SS G_CDS: 0.77 Total: -26.43 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.67 Total: -12.69 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.76 -7.66 -39.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062800895.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.045 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds