Wall clock time and date at job start Mon Mar 30 2020 06:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 O 1.42893 * 109.47427 * 180.02562 * 10 9 7 12 12 C 1.35900 * 117.00473 * 179.97438 * 11 10 9 13 13 C 1.38651 * 119.94641 * 359.72910 * 12 11 10 14 14 C 1.38118 * 119.86894 * 179.74414 * 13 12 11 15 15 C 1.38169 * 120.00065 * 0.52515 * 14 13 12 16 16 C 1.38496 * 120.32840 * 359.72289 * 15 14 13 17 17 C 1.38172 * 119.88639 * 0.02734 * 16 15 14 18 18 C 1.51363 * 109.77758 * 179.97438 * 17 16 15 19 19 C 1.54349 * 105.16906 * 342.82171 * 18 17 16 20 20 C 1.51382 * 130.36257 * 180.02562 * 16 15 14 21 21 H 1.08996 * 110.30698 * 78.29065 * 20 16 15 22 22 O 1.42902 * 110.30474 * 316.23846 * 20 16 15 23 23 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 24 24 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 25 25 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 26 26 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 27 27 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 28 28 H 1.08004 * 120.06393 * 359.97438 * 13 12 11 29 29 H 1.08003 * 119.99908 * 180.24456 * 14 13 12 30 30 H 1.07992 * 119.83552 * 179.74291 * 15 14 13 31 31 H 1.09002 * 110.30055 * 101.73999 * 18 17 16 32 32 H 1.08992 * 110.30296 * 223.89415 * 18 17 16 33 33 H 1.09000 * 110.81856 * 268.11567 * 19 18 17 34 34 H 1.08995 * 110.82296 * 144.56368 * 19 18 17 35 35 H 0.96698 * 113.99742 * 61.44943 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 8 5.4506 -2.6364 -0.0009 12 6 6.0677 -3.8473 -0.0003 13 6 5.3116 -5.0094 0.0060 14 6 5.9403 -6.2392 0.0013 15 6 7.3202 -6.3096 0.0013 16 6 8.0796 -5.1513 0.0003 17 6 7.4552 -3.9187 -0.0002 18 6 8.4943 -2.8182 -0.0007 19 6 9.8065 -3.5015 0.4396 20 6 9.5817 -4.9638 -0.0004 21 1 9.9824 -5.1235 -1.0014 22 8 10.1940 -5.8623 0.9269 23 1 -0.4849 0.8401 -0.0004 24 1 3.8746 -0.6800 -0.8911 25 1 3.8753 -0.6803 0.8889 26 1 3.6586 -3.1501 0.8892 27 1 3.6580 -3.1504 -0.8907 28 1 4.2330 -4.9532 0.0107 29 1 5.3534 -7.1458 0.0021 30 1 7.8091 -7.2725 0.0019 31 1 8.6027 -2.4008 -1.0018 32 1 8.2184 -2.0372 0.7077 33 1 9.9332 -3.4368 1.5202 34 1 10.6618 -3.0681 -0.0787 35 1 10.0490 -6.7965 0.7236 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062800895.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:46 Heat of formation + Delta-G solvation = -95.903369 kcal Electronic energy + Delta-G solvation = -17407.502190 eV Core-core repulsion = 14562.226316 eV Total energy + Delta-G solvation = -2845.275875 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 248.120 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.59795 -39.64394 -37.33403 -35.52080 -35.42518 -32.91115 -30.84098 -30.00996 -27.49884 -27.02313 -23.57662 -23.11899 -21.78430 -21.47133 -19.36779 -18.55406 -18.13566 -17.16389 -17.05585 -16.51552 -16.32439 -16.10419 -15.26924 -14.95319 -14.65456 -14.35620 -14.09193 -13.88326 -13.36074 -13.28666 -12.95828 -12.70921 -12.50974 -12.38664 -12.30132 -11.98335 -11.88994 -11.77242 -11.57345 -11.46761 -11.03892 -10.83978 -9.65307 -9.09680 -8.37362 -6.44473 0.25553 0.45012 1.34489 1.35734 1.48526 2.30930 2.31220 2.69252 2.97648 3.29215 3.40731 3.67058 3.96302 4.00049 4.10520 4.17725 4.23313 4.28663 4.38312 4.53153 4.62116 4.64670 4.79128 4.86020 4.97903 5.06567 5.16972 5.20817 5.26451 5.38523 5.43654 5.49890 5.51344 5.84624 6.13424 6.47158 6.61067 6.85018 7.20959 8.78443 Molecular weight = 248.12amu Principal moments of inertia in cm(-1) A = 0.037823 B = 0.004630 C = 0.004169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.109546 B = 6046.303632 C = 6714.473391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.251 1.251 6 H -0.278 1.278 7 C -0.539 4.539 8 H 0.041 0.959 9 C -0.004 4.004 10 C 0.087 3.913 11 O -0.333 6.333 12 C 0.116 3.884 13 C -0.222 4.222 14 C -0.082 4.082 15 C -0.139 4.139 16 C -0.105 4.105 17 C -0.150 4.150 18 C -0.074 4.074 19 C -0.107 4.107 20 C 0.152 3.848 21 H 0.097 0.903 22 O -0.570 6.570 23 H 0.271 0.729 24 H 0.028 0.972 25 H 0.025 0.975 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.127 0.873 29 H 0.153 0.847 30 H 0.156 0.844 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.088 -11.920 -1.156 24.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.183 4.183 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.174 1.174 6 H -0.203 1.203 7 C -0.577 4.577 8 H 0.060 0.940 9 C -0.042 4.042 10 C 0.012 3.988 11 O -0.247 6.247 12 C 0.070 3.930 13 C -0.241 4.241 14 C -0.100 4.100 15 C -0.157 4.157 16 C -0.106 4.106 17 C -0.150 4.150 18 C -0.111 4.111 19 C -0.144 4.144 20 C 0.094 3.906 21 H 0.114 0.886 22 O -0.378 6.378 23 H 0.080 0.920 24 H 0.046 0.954 25 H 0.044 0.956 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.145 0.855 29 H 0.171 0.829 30 H 0.174 0.826 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 21.197 -11.059 -0.882 23.924 hybrid contribution -1.195 0.176 -0.206 1.225 sum 20.002 -10.883 -1.088 22.797 Atomic orbital electron populations 1.70024 1.08109 1.28566 1.51455 1.25873 0.95616 1.03295 0.93546 0.85679 0.79426 0.78293 0.79443 1.18946 1.17448 1.20298 1.21110 0.90499 0.93923 1.52139 0.94031 1.19426 0.94380 0.92613 0.97759 1.22663 0.76032 0.99604 1.00508 1.86035 1.22611 1.27780 1.88319 1.19114 0.91747 0.84899 0.97215 1.21462 1.00528 0.92994 1.09104 1.21178 0.95007 0.96987 0.96846 1.20804 0.93172 0.98353 1.03387 1.21473 0.97910 0.92611 0.98600 1.20083 0.90387 0.98022 1.06553 1.20944 0.91764 0.95792 1.02618 1.22369 0.97302 0.92082 1.02648 1.21369 0.84941 0.90704 0.93634 0.88583 1.86519 1.76476 1.21059 1.53778 0.92032 0.95391 0.95624 0.92662 0.92486 0.85538 0.82885 0.82621 0.89367 0.91364 0.90668 0.87389 0.75506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16 2 C 0.02 0.88 5.47 84.65 0.46 1.34 16 3 Si 0.95 44.36 27.47 68.60 1.88 46.24 16 4 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 5 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.54 -31.21 9.66 25.60 0.25 -30.96 16 8 H 0.04 2.60 7.99 -2.91 -0.02 2.57 16 9 C 0.00 -0.21 4.41 29.85 0.13 -0.08 16 10 C 0.09 3.67 4.68 71.98 0.34 4.01 16 11 O -0.33 -13.38 10.08 -92.43 -0.93 -14.31 16 12 C 0.12 4.01 6.69 22.54 0.15 4.16 16 13 C -0.22 -6.86 9.03 22.34 0.20 -6.65 16 14 C -0.08 -1.94 10.04 22.22 0.22 -1.72 16 15 C -0.14 -2.85 9.93 22.31 0.22 -2.63 16 16 C -0.11 -2.46 5.82 -19.60 -0.11 -2.57 16 17 C -0.15 -4.40 6.11 -19.50 -0.12 -4.52 16 18 C -0.07 -1.81 6.71 30.52 0.20 -1.61 16 19 C -0.11 -2.00 6.80 31.51 0.21 -1.79 16 20 C 0.15 2.73 4.22 30.53 0.13 2.86 16 21 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 22 O -0.57 -9.70 13.36 -148.98 -1.99 -11.69 16 23 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 24 H 0.03 1.36 7.20 -2.39 -0.02 1.34 16 25 H 0.03 1.23 7.57 -2.38 -0.02 1.21 16 26 H 0.06 2.30 7.64 -2.39 -0.02 2.29 16 27 H 0.06 2.36 7.67 -2.39 -0.02 2.34 16 28 H 0.13 3.97 6.29 -2.91 -0.02 3.95 16 29 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 30 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 31 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.07 1.54 8.11 -2.39 -0.02 1.52 16 34 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.39 3.30 9.01 -74.06 -0.67 2.64 16 Total: -1.00 -69.83 293.67 1.92 -67.91 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: 0.37 Total: 10.15 kcal Atomic # 6 Polarization: -42.46 SS G_CDS: 2.29 Total: -40.17 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.30 Total: -58.13 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -2.92 Total: -26.00 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.24 kcal Total: -69.83 1.92 -67.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062800895.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.994 kcal (2) G-P(sol) polarization free energy of solvation -69.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds