Wall clock time and date at job start Mon Mar 30 2020 06:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46821 * 2 1 4 4 C 1.50708 * 109.46622 * 240.00689 * 2 1 3 5 5 H 1.07994 * 119.99676 * 243.47932 * 4 2 1 6 6 C 1.37877 * 120.00156 * 63.48414 * 4 2 1 7 7 N 1.31512 * 120.00022 * 196.52276 * 6 4 2 8 8 Si 1.86803 * 119.99816 * 16.51625 * 6 4 2 9 9 H 1.48498 * 109.46733 * 95.45647 * 8 6 4 10 10 H 1.48501 * 109.46916 * 215.44834 * 8 6 4 11 11 H 1.48493 * 109.47615 * 335.45315 * 8 6 4 12 12 N 1.46892 * 109.47456 * 120.00372 * 2 1 3 13 13 C 1.46897 * 111.00381 * 304.30337 * 12 2 1 14 14 C 1.39331 * 111.00076 * 180.34004 * 12 2 1 15 15 C 1.39108 * 119.92674 * 60.98331 * 14 12 2 16 16 C 1.37691 * 120.10243 * 180.24968 * 15 14 12 17 17 C 1.39794 * 119.96044 * 359.52306 * 16 15 14 18 18 C 1.43200 * 120.06573 * 180.21211 * 17 16 15 19 19 N 7.38819 * 167.80109 * 118.53878 * 2 1 3 20 20 C 1.39818 * 119.86306 * 0.44855 * 17 16 15 21 21 C 1.37832 * 119.89435 * 359.78245 * 20 17 16 22 22 F 1.35105 * 119.97740 * 179.97438 * 21 20 17 23 23 H 1.09001 * 109.46906 * 305.36192 * 1 2 3 24 24 H 1.08997 * 109.47791 * 65.36778 * 1 2 3 25 25 H 1.09003 * 109.47239 * 185.37086 * 1 2 3 26 26 H 0.96994 * 120.00256 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.46789 * 296.04790 * 13 12 2 28 28 H 1.08994 * 109.47157 * 56.04067 * 13 12 2 29 29 H 1.08998 * 109.47671 * 176.04927 * 13 12 2 30 30 H 1.08001 * 119.94538 * 359.97438 * 15 14 12 31 31 H 1.07999 * 120.01865 * 179.72178 * 16 15 14 32 32 H 1.07992 * 120.05208 * 179.79535 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6059 -1.6200 -1.1326 6 6 1.7594 -0.1987 -2.4816 7 7 1.9009 -0.9564 -3.5471 8 14 1.1885 1.5707 -2.6628 9 1 2.3554 2.4390 -2.9620 10 1 0.2059 1.6625 -3.7724 11 1 0.5506 2.0171 -1.3984 12 7 2.0197 -0.6925 1.1993 13 6 1.4666 -0.0886 2.4188 14 6 3.4125 -0.7044 1.2353 15 6 4.1160 0.4950 1.2766 16 6 5.4925 0.4876 1.3071 17 6 6.1843 -0.7272 1.3066 18 6 7.6158 -0.7376 1.3428 19 7 8.7514 -0.7459 1.3715 20 6 5.4757 -1.9318 1.2656 21 6 4.0979 -1.9175 1.2304 22 9 3.4116 -3.0806 1.1903 23 1 -0.3633 0.5948 0.8381 24 1 -0.3634 0.4283 -0.9341 25 1 -0.3634 -1.0232 0.0962 26 1 1.7094 -0.5964 -4.4272 27 1 1.8225 0.9377 2.5096 28 1 0.3780 -0.0921 2.3644 29 1 1.7890 -0.6630 3.2872 30 1 3.5816 1.4336 1.2803 31 1 6.0374 1.4197 1.3346 32 1 6.0072 -2.8719 1.2618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063093593.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:40 Heat of formation + Delta-G solvation = 29.326392 kcal Electronic energy + Delta-G solvation = -17813.420411 eV Core-core repulsion = 14882.407352 eV Total energy + Delta-G solvation = -2931.013059 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.27676 -39.58713 -37.34449 -35.83630 -32.89735 -30.91427 -30.50731 -29.16219 -26.33744 -24.46419 -23.01412 -22.40263 -19.87433 -18.95529 -16.98391 -16.46111 -16.19923 -15.67012 -15.26064 -14.66381 -14.09332 -13.90624 -13.73546 -13.60971 -13.29405 -13.17785 -12.74852 -12.52324 -12.36872 -12.03853 -11.80207 -11.57861 -11.37101 -10.94065 -10.83818 -10.65544 -10.38501 -9.69787 -9.31872 -8.76614 -8.58192 -8.25634 -7.79804 -6.18299 -4.12585 0.84173 1.41284 2.70152 2.99925 3.19004 3.28003 3.30947 3.83402 3.95880 4.30825 4.33562 4.72414 4.96118 5.10262 5.13353 5.41516 5.55254 5.70126 5.78423 5.95227 6.09381 6.17593 6.26775 6.32886 6.39600 6.42014 6.52921 6.71556 6.84585 7.17577 7.48590 7.52329 7.67199 7.93900 8.48258 8.94090 9.45577 10.94515 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.008106 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.578836 B = 3453.565892 C = 3836.688290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.192 3.808 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.080 0.920 6 C 0.080 3.920 7 N -0.883 5.883 8 Si 0.858 3.142 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.256 1.256 12 N -0.503 5.503 13 C 0.025 3.975 14 C 0.143 3.857 15 C -0.127 4.127 16 C -0.070 4.070 17 C -0.028 4.028 18 C 0.268 3.732 19 N -0.431 5.431 20 C -0.104 4.104 21 C 0.124 3.876 22 F -0.121 7.121 23 H 0.026 0.974 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.265 0.735 27 H 0.024 0.976 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 3.252 11.146 11.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.087 3.913 3 H 0.020 0.980 4 C -0.555 4.555 5 H 0.098 0.902 6 C -0.123 4.123 7 N -0.520 5.520 8 Si 0.685 3.315 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.180 1.180 12 N -0.225 5.225 13 C -0.122 4.122 14 C 0.046 3.954 15 C -0.147 4.147 16 C -0.091 4.091 17 C -0.032 4.032 18 C -0.046 4.046 19 N -0.107 5.107 20 C -0.126 4.126 21 C 0.103 3.897 22 F -0.099 7.099 23 H 0.045 0.955 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 3.116 2.692 10.945 11.694 hybrid contribution -0.660 1.551 -0.497 1.757 sum 2.456 4.242 10.448 11.540 Atomic orbital electron populations 1.22223 0.97423 1.01033 0.99203 1.19792 0.92252 0.91938 0.87343 0.98023 1.20829 1.35533 1.11217 0.87872 0.90158 1.24835 0.94657 0.97062 0.95757 1.69972 1.48123 1.35165 0.98695 0.87257 0.78952 0.86771 0.78505 1.20646 1.21085 1.18026 1.59570 1.02569 1.56576 1.03759 1.22479 1.01215 0.96641 0.91834 1.18936 0.90906 0.91100 0.94411 1.21458 0.93870 0.98689 1.00693 1.20941 0.93931 0.96339 0.97893 1.15591 0.84090 0.94123 1.09365 1.25601 0.92492 0.93402 0.93146 1.81214 1.12028 1.07635 1.09787 1.20914 0.92234 0.98161 1.01317 1.17247 0.88457 0.81617 1.02376 1.91526 1.79628 1.45334 1.93399 0.95530 0.92879 0.92213 0.92533 0.95744 0.90432 0.92074 0.84690 0.84986 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 7.91 37.16 0.29 -2.55 16 2 C 0.19 4.15 1.39 -68.86 -0.10 4.05 16 3 H 0.00 0.05 5.78 -51.93 -0.30 -0.25 16 4 C -0.52 -13.63 8.49 -34.44 -0.29 -13.92 16 5 H 0.08 2.37 7.50 -52.49 -0.39 1.98 16 6 C 0.08 2.19 5.31 -17.82 -0.09 2.10 16 7 N -0.88 -25.90 13.96 55.43 0.77 -25.13 16 8 Si 0.86 19.91 25.75 -169.99 -4.38 15.53 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.26 -5.48 5.53 56.52 0.31 -5.17 16 12 N -0.50 -9.53 4.42 -172.59 -0.76 -10.30 16 13 C 0.03 0.37 8.99 60.06 0.54 0.91 16 14 C 0.14 2.53 3.70 -83.72 -0.31 2.22 16 15 C -0.13 -1.91 8.53 -39.46 -0.34 -2.25 16 16 C -0.07 -0.92 9.74 -39.20 -0.38 -1.30 16 17 C -0.03 -0.38 5.74 -106.80 -0.61 -1.00 16 18 C 0.27 3.80 15.33 -22.47 -0.34 3.45 16 19 N -0.43 -6.78 18.54 41.84 0.78 -6.01 16 20 C -0.10 -1.51 9.72 -39.14 -0.38 -1.89 16 21 C 0.12 2.14 7.02 -39.32 -0.28 1.86 16 22 F -0.12 -2.29 17.07 2.25 0.04 -2.26 16 23 H 0.03 0.44 6.58 -51.93 -0.34 0.10 16 24 H 0.05 1.12 4.98 -51.93 -0.26 0.86 16 25 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.02 0.32 7.27 -51.93 -0.38 -0.05 16 28 H 0.08 1.09 6.13 -51.93 -0.32 0.77 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.14 1.88 6.99 -52.49 -0.37 1.51 16 31 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 277.27 15.07 4.18 4.18 Total: -1.00 -29.58 277.27 -4.94 -34.52 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -3.27 Total: -2.23 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.29 Total: -8.31 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 0.79 Total: -41.43 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.26 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.38 Total: 15.53 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.58 -4.94 -34.52 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093593.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.847 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds