Wall clock time and date at job start Mon Mar 30 2020 06:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46821 * 2 1 4 4 C 1.50708 * 109.46622 * 240.00689 * 2 1 3 5 5 H 1.07994 * 119.99676 * 243.47932 * 4 2 1 6 6 C 1.37877 * 120.00156 * 63.48414 * 4 2 1 7 7 N 1.31512 * 120.00022 * 196.52276 * 6 4 2 8 8 Si 1.86803 * 119.99816 * 16.51625 * 6 4 2 9 9 H 1.48498 * 109.46733 * 95.45647 * 8 6 4 10 10 H 1.48501 * 109.46916 * 215.44834 * 8 6 4 11 11 H 1.48493 * 109.47615 * 335.45315 * 8 6 4 12 12 N 1.46892 * 109.47456 * 120.00372 * 2 1 3 13 13 C 1.46897 * 111.00381 * 304.30337 * 12 2 1 14 14 C 1.39331 * 111.00076 * 180.34004 * 12 2 1 15 15 C 1.39108 * 119.92674 * 60.98331 * 14 12 2 16 16 C 1.37691 * 120.10243 * 180.24968 * 15 14 12 17 17 C 1.39794 * 119.96044 * 359.52306 * 16 15 14 18 18 C 1.43200 * 120.06573 * 180.21211 * 17 16 15 19 19 N 7.38819 * 167.80109 * 118.53878 * 2 1 3 20 20 C 1.39818 * 119.86306 * 0.44855 * 17 16 15 21 21 C 1.37832 * 119.89435 * 359.78245 * 20 17 16 22 22 F 1.35105 * 119.97740 * 179.97438 * 21 20 17 23 23 H 1.09001 * 109.46906 * 305.36192 * 1 2 3 24 24 H 1.08997 * 109.47791 * 65.36778 * 1 2 3 25 25 H 1.09003 * 109.47239 * 185.37086 * 1 2 3 26 26 H 0.96994 * 120.00256 * 180.02562 * 7 6 4 27 27 H 1.09005 * 109.46789 * 296.04790 * 13 12 2 28 28 H 1.08994 * 109.47157 * 56.04067 * 13 12 2 29 29 H 1.08998 * 109.47671 * 176.04927 * 13 12 2 30 30 H 1.08001 * 119.94538 * 359.97438 * 15 14 12 31 31 H 1.07999 * 120.01865 * 179.72178 * 16 15 14 32 32 H 1.07992 * 120.05208 * 179.79535 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6059 -1.6200 -1.1326 6 6 1.7594 -0.1987 -2.4816 7 7 1.9009 -0.9564 -3.5471 8 14 1.1885 1.5707 -2.6628 9 1 2.3554 2.4390 -2.9620 10 1 0.2059 1.6625 -3.7724 11 1 0.5506 2.0171 -1.3984 12 7 2.0197 -0.6925 1.1993 13 6 1.4666 -0.0886 2.4188 14 6 3.4125 -0.7044 1.2353 15 6 4.1160 0.4950 1.2766 16 6 5.4925 0.4876 1.3071 17 6 6.1843 -0.7272 1.3066 18 6 7.6158 -0.7376 1.3428 19 7 8.7514 -0.7459 1.3715 20 6 5.4757 -1.9318 1.2656 21 6 4.0979 -1.9175 1.2304 22 9 3.4116 -3.0806 1.1903 23 1 -0.3633 0.5948 0.8381 24 1 -0.3634 0.4283 -0.9341 25 1 -0.3634 -1.0232 0.0962 26 1 1.7094 -0.5964 -4.4272 27 1 1.8225 0.9377 2.5096 28 1 0.3780 -0.0921 2.3644 29 1 1.7890 -0.6630 3.2872 30 1 3.5816 1.4336 1.2803 31 1 6.0374 1.4197 1.3346 32 1 6.0072 -2.8719 1.2618 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063093593.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:40 Heat of formation + Delta-G solvation = 10.816154 kcal Electronic energy + Delta-G solvation = -17814.223075 eV Core-core repulsion = 14882.407352 eV Total energy + Delta-G solvation = -2931.815723 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.65833 -40.84827 -38.65594 -37.09997 -34.77637 -32.47186 -31.69677 -30.54844 -27.79464 -26.11921 -24.35593 -23.61061 -21.43157 -20.19476 -18.83906 -17.88842 -17.52686 -16.93991 -16.65154 -16.26681 -15.66066 -15.11864 -14.96114 -14.93079 -14.76491 -14.42513 -14.38987 -14.03017 -13.58267 -13.41173 -13.18131 -12.86616 -12.66918 -12.58119 -12.36322 -12.21537 -12.06941 -11.43481 -11.16078 -10.60004 -9.93602 -9.51404 -9.19533 -8.24767 -6.22928 -0.34716 0.23523 1.37949 1.41991 1.50390 1.54398 1.81036 2.39129 2.64013 2.79485 3.02563 3.11208 3.50989 3.83189 4.04588 4.23789 4.36378 4.54025 4.59361 4.72019 4.80012 4.82240 4.84687 5.00266 5.06857 5.15686 5.20866 5.29282 5.48618 5.67963 5.77189 5.97691 6.37127 6.51658 6.63977 6.83757 7.39570 8.92370 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.021343 B = 0.008106 C = 0.007296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.578836 B = 3453.565892 C = 3836.688290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.195 3.805 3 H 0.013 0.987 4 C -0.512 4.512 5 H 0.031 0.969 6 C 0.020 3.980 7 N -0.941 5.941 8 Si 0.924 3.076 9 H -0.277 1.277 10 H -0.291 1.291 11 H -0.221 1.221 12 N -0.525 5.525 13 C 0.024 3.976 14 C 0.120 3.880 15 C -0.130 4.130 16 C -0.052 4.052 17 C -0.024 4.024 18 C 0.289 3.711 19 N -0.455 5.455 20 C -0.097 4.097 21 C 0.091 3.909 22 F -0.141 7.141 23 H 0.066 0.934 24 H 0.042 0.958 25 H 0.046 0.954 26 H 0.264 0.736 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.153 0.847 31 H 0.168 0.832 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.593 5.876 12.827 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.090 3.910 3 H 0.031 0.969 4 C -0.550 4.550 5 H 0.049 0.951 6 C -0.178 4.178 7 N -0.581 5.581 8 Si 0.747 3.253 9 H -0.203 1.203 10 H -0.217 1.217 11 H -0.143 1.143 12 N -0.247 5.247 13 C -0.122 4.122 14 C 0.024 3.976 15 C -0.150 4.150 16 C -0.073 4.073 17 C -0.028 4.028 18 C -0.026 4.026 19 N -0.130 5.130 20 C -0.118 4.118 21 C 0.070 3.930 22 F -0.120 7.120 23 H 0.085 0.915 24 H 0.061 0.939 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.170 0.830 31 H 0.185 0.815 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.100 5.321 12.677 14.093 hybrid contribution -0.571 0.625 -0.952 1.274 sum 2.529 5.946 11.725 13.387 Atomic orbital electron populations 1.22144 0.96206 1.01035 1.00303 1.19613 0.93045 0.91788 0.86598 0.96921 1.21060 1.34143 1.09594 0.90203 0.95063 1.25712 0.95225 1.01555 0.95276 1.70137 1.51034 1.37551 0.99361 0.86209 0.78528 0.80862 0.79662 1.20328 1.21721 1.14326 1.59379 1.03719 1.57314 1.04254 1.22580 1.01461 0.97797 0.90328 1.19173 0.90701 0.92090 0.95654 1.21634 0.94627 0.98263 1.00510 1.21295 0.93382 0.97384 0.95278 1.15602 0.83796 0.94221 1.09148 1.25442 0.92165 0.92622 0.92339 1.81250 1.12712 1.08434 1.10644 1.21066 0.91292 0.99466 1.00010 1.17607 0.89521 0.81264 1.04575 1.91463 1.80209 1.46421 1.93872 0.91542 0.93912 0.93533 0.92736 0.93664 0.89802 0.90777 0.82953 0.81480 0.82431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.28 7.91 71.98 0.57 -4.71 16 2 C 0.20 8.12 1.39 44.17 0.06 8.18 16 3 H 0.01 0.52 5.78 -2.39 -0.01 0.51 16 4 C -0.51 -27.41 8.49 25.60 0.22 -27.19 16 5 H 0.03 1.94 7.50 -2.91 -0.02 1.91 16 6 C 0.02 1.13 5.31 84.65 0.45 1.57 16 7 N -0.94 -57.18 13.96 21.45 0.30 -56.88 16 8 Si 0.92 40.38 25.75 68.60 1.77 42.14 16 9 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.22 -8.33 5.53 99.48 0.55 -7.78 16 12 N -0.52 -19.20 4.42 -699.96 -3.10 -22.30 16 13 C 0.02 0.63 8.99 127.69 1.15 1.78 16 14 C 0.12 4.12 3.70 38.42 0.14 4.26 16 15 C -0.13 -3.57 8.53 22.35 0.19 -3.38 16 16 C -0.05 -1.20 9.74 22.52 0.22 -0.99 16 17 C -0.02 -0.61 5.74 -21.27 -0.12 -0.73 16 18 C 0.29 7.53 15.33 88.33 1.35 8.89 16 19 N -0.45 -13.46 18.54 19.00 0.35 -13.11 16 20 C -0.10 -2.72 9.72 22.56 0.22 -2.50 16 21 C 0.09 3.16 7.02 22.44 0.16 3.32 16 22 F -0.14 -5.60 17.07 44.97 0.77 -4.84 16 23 H 0.07 1.98 6.58 -2.39 -0.02 1.96 16 24 H 0.04 1.69 4.98 -2.39 -0.01 1.68 16 25 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.04 1.01 7.27 -2.38 -0.02 0.99 16 28 H 0.08 2.07 6.13 -2.39 -0.01 2.06 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.15 3.61 6.99 -2.91 -0.02 3.59 16 31 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -66.39 277.27 5.69 -60.70 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 0.99 Total: 5.76 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: 4.61 Total: -11.49 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -2.44 Total: -92.29 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.77 Total: -4.84 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.77 Total: 42.14 kcal Total: -66.39 5.69 -60.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063093593.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.520 kcal (2) G-P(sol) polarization free energy of solvation -66.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds