Wall clock time and date at job start Mon Mar 30 2020 06:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 N 1.46499 * 109.46840 * 180.02562 * 3 2 1 5 5 C 1.37845 * 126.53944 * 90.02710 * 4 3 2 6 6 C 1.40178 * 125.29939 * 359.97438 * 5 4 3 7 7 H 1.07999 * 119.99911 * 359.97438 * 6 5 4 8 8 C 1.40349 * 119.99717 * 179.97438 * 6 5 4 9 9 N 1.30588 * 119.99897 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99915 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.46930 * 60.00090 * 10 8 6 12 12 H 1.48494 * 109.47154 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47196 * 300.00037 * 10 8 6 14 14 N 1.32472 * 109.39604 * 179.97438 * 5 4 3 15 15 C 1.33973 * 109.79598 * 0.02562 * 14 5 4 16 16 C 1.40514 * 133.17365 * 180.02562 * 15 14 5 17 17 C 1.36532 * 119.83335 * 179.27010 * 16 15 14 18 18 F 1.35098 * 119.64411 * 180.19435 * 17 16 15 19 19 C 1.39268 * 120.70902 * 0.56166 * 17 16 15 20 20 C 1.37945 * 120.54991 * 359.65541 * 19 17 16 21 21 C 1.38026 * 126.54208 * 269.71460 * 4 3 2 22 22 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 23 23 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 25 25 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 26 26 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 27 27 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 28 28 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 29 29 H 0.97005 * 119.99525 * 180.02562 * 9 8 6 30 30 H 1.08001 * 120.08747 * 359.94756 * 16 15 14 31 31 H 1.07997 * 119.72920 * 179.63378 * 19 17 16 32 32 H 1.07991 * 120.10756 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.3252 1.4432 -1.1085 6 6 3.8877 1.4435 -2.4402 7 1 2.8306 1.4428 -2.6614 8 6 4.8235 1.4448 -3.4862 9 7 6.1017 1.4461 -3.2188 10 14 4.2405 1.4445 -5.2610 11 1 3.4197 2.6561 -5.5125 12 1 5.4162 1.4466 -6.1681 13 1 3.4224 0.2312 -5.5130 14 7 5.5912 1.4435 -0.7185 15 6 5.6538 1.4425 0.6197 16 6 6.7223 1.4427 1.5322 17 6 6.4697 1.4565 2.8739 18 9 7.4999 1.4607 3.7478 19 6 5.1614 1.4586 3.3513 20 6 4.0955 1.4540 2.4757 21 6 4.3272 1.4479 1.1080 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 1.6765 1.9564 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 6.7484 1.4474 -3.9417 30 1 7.7409 1.4431 1.1732 31 1 4.9798 1.4636 4.4159 32 1 3.0839 1.4552 2.8538 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071743894.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:27:00 Heat of formation + Delta-G solvation = -10.354775 kcal Electronic energy + Delta-G solvation = -17598.346342 eV Core-core repulsion = 14665.612578 eV Total energy + Delta-G solvation = -2932.733763 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.67985 -42.25501 -37.75935 -36.22957 -35.22614 -33.03361 -30.69145 -30.55030 -27.74566 -26.88863 -23.41293 -22.94053 -22.55040 -21.28145 -19.03050 -18.47036 -17.72775 -17.24474 -16.47973 -16.45522 -15.88810 -15.74379 -15.60508 -14.79583 -14.70167 -14.18445 -13.92459 -13.66067 -13.32127 -13.02336 -12.98100 -12.83714 -12.59027 -12.34353 -12.01644 -12.00224 -11.96944 -11.63870 -11.04310 -10.87623 -9.91240 -9.07443 -8.75147 -8.54594 -6.62399 0.29690 0.70031 1.41346 1.45798 1.56245 2.12496 2.25528 2.36627 3.00264 3.46650 3.50004 3.80391 3.89175 4.08920 4.24501 4.37550 4.44244 4.46772 4.55727 4.65519 4.87635 4.92874 4.98555 5.11982 5.16547 5.20318 5.29069 5.41587 5.43688 5.57109 5.86972 6.05644 6.08372 6.39970 6.70353 7.12609 7.97091 8.37218 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.018814 B = 0.008323 C = 0.005899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.867961 B = 3363.240259 C = 4745.181056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.133 4.133 3 C 0.124 3.876 4 N -0.537 5.537 5 C 0.396 3.604 6 C -0.458 4.458 7 H 0.108 0.892 8 C 0.029 3.971 9 N -0.764 5.764 10 Si 1.001 2.999 11 H -0.252 1.252 12 H -0.273 1.273 13 H -0.253 1.253 14 N -0.585 5.585 15 C 0.086 3.914 16 C -0.188 4.188 17 C 0.090 3.910 18 F -0.152 7.152 19 C -0.194 4.194 20 C -0.066 4.066 21 C -0.021 4.021 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.160 0.840 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.308 -0.776 3.776 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.002 3.998 4 N -0.232 5.232 5 C 0.159 3.841 6 C -0.495 4.495 7 H 0.126 0.874 8 C -0.194 4.194 9 N -0.387 5.387 10 Si 0.819 3.181 11 H -0.176 1.176 12 H -0.197 1.197 13 H -0.176 1.176 14 N -0.310 5.310 15 C -0.042 4.042 16 C -0.211 4.211 17 C 0.069 3.931 18 F -0.131 7.131 19 C -0.215 4.215 20 C -0.088 4.088 21 C -0.130 4.130 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.104 0.896 28 H 0.112 0.888 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.177 0.823 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.524 -0.769 3.184 10.072 hybrid contribution 0.101 -0.031 -0.161 0.193 sum -9.422 -0.800 3.023 9.928 Atomic orbital electron populations 1.21637 0.92159 1.02794 1.02904 1.21832 0.98155 0.95725 1.01438 1.21723 0.75818 0.98378 1.03869 1.45741 1.06578 1.66858 1.04061 1.20794 0.83510 0.90820 0.88931 1.19009 0.95980 1.47736 0.86800 0.87432 1.27036 0.94097 0.92016 1.06268 1.70108 1.03260 1.28971 1.36374 0.84982 0.78805 0.80548 0.73730 1.17559 1.19708 1.17640 1.71277 1.18150 1.34315 1.07297 1.19568 0.92293 0.99766 0.92549 1.19662 0.97743 1.12559 0.91110 1.16924 0.84777 1.05884 0.85556 1.91392 1.58397 1.94627 1.68645 1.20693 0.89079 1.10913 1.00813 1.19837 0.99795 1.01554 0.87576 1.19296 0.91731 1.11534 0.90413 0.91794 0.91579 0.91132 0.93547 0.92780 0.89561 0.88814 0.90424 0.87217 0.82289 0.83355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 9.91 71.98 0.71 -2.03 16 2 C -0.13 -3.86 6.26 30.59 0.19 -3.67 16 3 C 0.12 4.08 5.90 86.38 0.51 4.59 16 4 N -0.54 -24.37 2.86 -512.86 -1.47 -25.83 16 5 C 0.40 21.44 7.41 133.69 0.99 22.43 16 6 C -0.46 -23.15 8.99 23.26 0.21 -22.94 16 7 H 0.11 4.77 7.10 -2.91 -0.02 4.75 16 8 C 0.03 1.43 5.50 85.39 0.47 1.90 16 9 N -0.76 -41.61 11.85 21.89 0.26 -41.35 16 10 Si 1.00 35.74 29.56 68.60 2.03 37.77 16 11 H -0.25 -8.45 7.11 99.48 0.71 -7.75 16 12 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 13 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 14 N -0.59 -34.82 9.33 -186.53 -1.74 -36.56 16 15 C 0.09 4.62 7.20 40.14 0.29 4.91 16 16 C -0.19 -9.16 10.04 22.43 0.23 -8.93 16 17 C 0.09 3.73 7.24 22.12 0.16 3.89 16 18 F -0.15 -5.88 17.25 44.97 0.78 -5.10 16 19 C -0.19 -6.88 10.01 22.45 0.22 -6.66 16 20 C -0.07 -2.43 10.04 22.32 0.22 -2.21 16 21 C -0.02 -0.99 6.88 39.05 0.27 -0.72 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 2.75 7.32 -2.39 -0.02 2.73 16 28 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.29 14.06 8.29 -92.70 -0.77 13.29 16 30 H 0.11 5.35 8.06 -2.91 -0.02 5.33 16 31 H 0.16 4.35 8.06 -2.91 -0.02 4.32 16 32 H 0.15 4.21 8.06 -2.92 -0.02 4.19 16 Total: -1.00 -66.52 283.29 5.46 -61.06 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 1.13 Total: 19.46 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: 4.48 Total: -9.44 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -2.95 Total: -103.74 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 0.78 Total: -5.10 kcal Atomic # 14 Polarization: 35.74 SS G_CDS: 2.03 Total: 37.77 kcal Total: -66.52 5.46 -61.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071743894.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.705 kcal (2) G-P(sol) polarization free energy of solvation -66.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds