Wall clock time and date at job start Mon Mar 30 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29993 * 127.32265 * 2 1 4 4 O 1.20655 * 112.38536 * 179.97438 * 3 2 1 5 5 C 1.33694 * 113.13689 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.85717 * 179.97438 * 5 4 3 7 7 C 1.37590 * 106.27923 * 0.02562 * 5 4 3 8 8 C 1.47142 * 128.57924 * 179.97438 * 7 5 4 9 9 N 1.32037 * 125.29187 * 359.68925 * 8 7 5 10 10 C 1.32797 * 109.21756 * 179.88881 * 9 8 7 11 11 C 1.50700 * 126.34523 * 180.11121 * 10 9 8 12 12 C 1.39753 * 107.30759 * 0.37010 * 10 9 8 13 13 C 1.39538 * 126.77979 * 179.80884 * 12 10 9 14 14 H 1.08002 * 120.00497 * 359.97438 * 13 12 10 15 15 C 1.40134 * 120.00114 * 179.97438 * 13 12 10 16 16 N 1.30839 * 119.99581 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00208 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47245 * 90.00256 * 17 15 13 19 19 H 1.48503 * 109.46925 * 210.00452 * 17 15 13 20 20 H 1.48502 * 109.46959 * 329.99972 * 17 15 13 21 21 O 1.34589 * 125.28668 * 179.97438 * 8 7 5 22 22 H 1.08997 * 109.47091 * 270.02434 * 1 2 3 23 23 H 1.08996 * 109.46977 * 30.02575 * 1 2 3 24 24 H 1.08999 * 109.46885 * 150.02727 * 1 2 3 25 25 H 1.09002 * 109.47626 * 0.02933 * 6 5 4 26 26 H 1.08997 * 109.47377 * 120.02734 * 6 5 4 27 27 H 1.09003 * 109.47170 * 240.02341 * 6 5 4 28 28 H 1.09007 * 109.47013 * 270.31011 * 11 10 9 29 29 H 1.09003 * 109.47165 * 30.30649 * 11 10 9 30 30 H 1.08996 * 109.47306 * 150.31024 * 11 10 9 31 31 H 0.96998 * 119.99375 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0337 0.0000 4 8 3.4610 0.7227 0.0005 5 6 3.6517 -0.6005 0.0015 6 6 4.9740 -1.3232 0.0018 7 6 2.3994 -1.1706 0.0010 8 6 2.0410 -2.5977 0.0011 9 7 2.9003 -3.6001 -0.0040 10 6 2.2329 -4.7482 0.0003 11 6 2.8333 -6.1304 -0.0008 12 6 0.8704 -4.4370 0.0001 13 6 -0.1929 -5.3405 0.0002 14 1 0.0011 -6.4029 0.0000 15 6 -1.5127 -4.8694 0.0005 16 7 -1.7478 -3.5823 0.0003 17 14 -2.9362 -6.0789 0.0013 18 1 -3.3131 -6.3990 1.4016 19 1 -4.0988 -5.4755 -0.6986 20 1 -2.5286 -7.3236 -0.6986 21 8 0.7860 -3.0841 0.0011 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 5.7858 -0.5958 0.0016 26 1 5.0464 -1.9481 0.8919 27 1 5.0464 -1.9488 -0.8880 28 1 2.9785 -6.4626 -1.0288 29 1 3.7942 -6.1095 0.5134 30 1 2.1616 -6.8187 0.5120 31 1 -2.6613 -3.2562 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074111515.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:34 Heat of formation + Delta-G solvation = 45.387523 kcal Electronic energy + Delta-G solvation = -17855.259755 eV Core-core repulsion = 14912.570370 eV Total energy + Delta-G solvation = -2942.689385 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -44.05814 -40.99535 -34.36628 -33.86114 -33.41991 -32.82395 -30.18968 -28.07520 -27.52612 -27.39551 -24.82025 -22.52432 -20.37690 -19.72070 -18.78317 -17.62224 -17.05860 -16.50860 -15.48012 -14.74976 -14.72050 -13.79215 -13.39400 -13.13198 -12.85201 -12.56652 -12.54676 -12.14670 -12.05992 -12.02708 -11.79299 -11.58163 -11.55821 -11.07772 -10.87444 -10.59669 -10.26711 -10.05276 -9.55358 -9.16165 -8.98000 -8.80033 -7.29431 -7.19006 -4.66917 1.89356 2.44211 2.76169 2.86918 2.91606 3.44466 3.62120 3.63909 4.29762 4.35656 4.85685 4.87308 5.00380 5.33343 5.73213 5.91782 6.01319 6.09631 6.14791 6.17995 6.23239 6.39453 6.49085 6.58912 6.60189 6.67069 6.78097 6.87613 7.08247 7.45181 7.89183 8.02109 8.26756 8.33201 8.91956 9.48067 9.78690 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.026095 B = 0.007683 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.733825 B = 3643.748155 C = 4690.732446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.029 3.971 3 N -0.372 5.372 4 O 0.082 5.918 5 C -0.050 4.050 6 C -0.048 4.048 7 C -0.065 4.065 8 C 0.069 3.931 9 N -0.422 5.422 10 C -0.190 4.190 11 C -0.026 4.026 12 C 0.187 3.813 13 C -0.413 4.413 14 H 0.112 0.888 15 C 0.063 3.937 16 N -0.757 5.757 17 Si 0.928 3.072 18 H -0.264 1.264 19 H -0.272 1.272 20 H -0.256 1.256 21 O -0.177 6.177 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.068 0.932 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.274 0.431 0.022 2.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.133 4.133 3 N -0.081 5.081 4 O 0.019 5.981 5 C -0.114 4.114 6 C -0.105 4.105 7 C -0.070 4.070 8 C -0.123 4.123 9 N -0.151 5.151 10 C -0.322 4.322 11 C -0.084 4.084 12 C 0.131 3.869 13 C -0.442 4.442 14 H 0.130 0.870 15 C -0.161 4.161 16 N -0.381 5.381 17 Si 0.751 3.249 18 H -0.189 1.189 19 H -0.197 1.197 20 H -0.180 1.180 21 O -0.066 6.066 22 H 0.094 0.906 23 H 0.085 0.915 24 H 0.117 0.883 25 H 0.087 0.913 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.568 2.130 0.011 3.336 hybrid contribution -1.649 -1.288 0.020 2.092 sum 0.919 0.841 0.031 1.247 Atomic orbital electron populations 1.20137 0.85375 1.03876 1.03279 1.24776 0.98585 0.87364 1.02557 1.73421 0.89538 1.23948 1.21168 1.84423 1.21076 1.22907 1.69661 1.24101 0.97423 0.82872 1.06959 1.20093 0.87987 0.97855 1.04597 1.18773 0.91131 0.88865 1.08245 1.20678 0.79287 0.90484 1.21865 1.69406 1.34722 0.98039 1.12893 1.21404 0.89783 0.93677 1.27301 1.19464 0.98611 0.90605 0.99721 1.20454 0.94400 0.79687 0.92391 1.18843 0.88191 0.93987 1.43176 0.86988 1.26258 1.01248 0.96319 0.92275 1.69760 1.23911 1.14311 1.30140 0.85944 0.78796 0.80418 0.79711 1.18862 1.19694 1.17962 1.84838 1.28091 1.20196 1.73470 0.90629 0.91540 0.88323 0.91308 0.89469 0.89450 0.94005 0.93446 0.92707 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.32 10.39 36.01 0.37 -0.95 16 2 C 0.03 0.62 7.59 -79.73 -0.61 0.02 16 3 N -0.37 -7.63 12.00 34.82 0.42 -7.22 16 4 O 0.08 1.58 11.07 18.14 0.20 1.78 16 5 C -0.05 -0.99 7.57 -34.55 -0.26 -1.25 16 6 C -0.05 -0.75 9.70 36.00 0.35 -0.40 16 7 C -0.07 -1.48 6.49 -102.88 -0.67 -2.15 16 8 C 0.07 1.77 8.12 -13.85 -0.11 1.66 16 9 N -0.42 -10.56 10.53 -7.05 -0.07 -10.63 16 10 C -0.19 -4.72 7.25 -81.61 -0.59 -5.31 16 11 C -0.03 -0.53 10.22 36.01 0.37 -0.16 16 12 C 0.19 4.93 6.82 -38.53 -0.26 4.67 16 13 C -0.41 -10.11 9.07 -38.39 -0.35 -10.46 16 14 H 0.11 2.49 7.33 -52.49 -0.38 2.11 16 15 C 0.06 1.44 5.50 -17.26 -0.09 1.35 16 16 N -0.76 -18.25 12.04 55.56 0.67 -17.58 16 17 Si 0.93 16.80 29.56 -169.99 -5.03 11.78 16 18 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 19 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 20 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 21 O -0.18 -4.83 8.30 1.35 0.01 -4.82 16 22 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.10 2.10 7.35 -51.93 -0.38 1.71 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 27 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 1.01 7.58 -51.93 -0.39 0.62 16 31 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 LS Contribution 281.12 15.07 4.24 4.24 Total: -1.00 -28.52 281.12 -4.67 -33.19 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -3.25 Total: 2.25 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.85 Total: -12.98 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 1.01 Total: -35.43 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: 0.21 Total: -3.03 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.78 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.52 -4.67 -33.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074111515.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.579 kcal (2) G-P(sol) polarization free energy of solvation -28.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds