Wall clock time and date at job start Mon Mar 30 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29993 * 127.32265 * 2 1 4 4 O 1.20655 * 112.38536 * 179.97438 * 3 2 1 5 5 C 1.33694 * 113.13689 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.85717 * 179.97438 * 5 4 3 7 7 C 1.37590 * 106.27923 * 0.02562 * 5 4 3 8 8 C 1.47142 * 128.57924 * 179.97438 * 7 5 4 9 9 N 1.32037 * 125.29187 * 359.68925 * 8 7 5 10 10 C 1.32797 * 109.21756 * 179.88881 * 9 8 7 11 11 C 1.50700 * 126.34523 * 180.11121 * 10 9 8 12 12 C 1.39753 * 107.30759 * 0.37010 * 10 9 8 13 13 C 1.39538 * 126.77979 * 179.80884 * 12 10 9 14 14 H 1.08002 * 120.00497 * 359.97438 * 13 12 10 15 15 C 1.40134 * 120.00114 * 179.97438 * 13 12 10 16 16 N 1.30839 * 119.99581 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00208 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47245 * 90.00256 * 17 15 13 19 19 H 1.48503 * 109.46925 * 210.00452 * 17 15 13 20 20 H 1.48502 * 109.46959 * 329.99972 * 17 15 13 21 21 O 1.34589 * 125.28668 * 179.97438 * 8 7 5 22 22 H 1.08997 * 109.47091 * 270.02434 * 1 2 3 23 23 H 1.08996 * 109.46977 * 30.02575 * 1 2 3 24 24 H 1.08999 * 109.46885 * 150.02727 * 1 2 3 25 25 H 1.09002 * 109.47626 * 0.02933 * 6 5 4 26 26 H 1.08997 * 109.47377 * 120.02734 * 6 5 4 27 27 H 1.09003 * 109.47170 * 240.02341 * 6 5 4 28 28 H 1.09007 * 109.47013 * 270.31011 * 11 10 9 29 29 H 1.09003 * 109.47165 * 30.30649 * 11 10 9 30 30 H 1.08996 * 109.47306 * 150.31024 * 11 10 9 31 31 H 0.96998 * 119.99375 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0337 0.0000 4 8 3.4610 0.7227 0.0005 5 6 3.6517 -0.6005 0.0015 6 6 4.9740 -1.3232 0.0018 7 6 2.3994 -1.1706 0.0010 8 6 2.0410 -2.5977 0.0011 9 7 2.9003 -3.6001 -0.0040 10 6 2.2329 -4.7482 0.0003 11 6 2.8333 -6.1304 -0.0008 12 6 0.8704 -4.4370 0.0001 13 6 -0.1929 -5.3405 0.0002 14 1 0.0011 -6.4029 0.0000 15 6 -1.5127 -4.8694 0.0005 16 7 -1.7478 -3.5823 0.0003 17 14 -2.9362 -6.0789 0.0013 18 1 -3.3131 -6.3990 1.4016 19 1 -4.0988 -5.4755 -0.6986 20 1 -2.5286 -7.3236 -0.6986 21 8 0.7860 -3.0841 0.0011 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8897 -0.5142 24 1 -0.3633 -0.8902 -0.5134 25 1 5.7858 -0.5958 0.0016 26 1 5.0464 -1.9481 0.8919 27 1 5.0464 -1.9488 -0.8880 28 1 2.9785 -6.4626 -1.0288 29 1 3.7942 -6.1095 0.5134 30 1 2.1616 -6.8187 0.5120 31 1 -2.6613 -3.2562 0.0002 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074111515.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:34 Heat of formation + Delta-G solvation = 27.111434 kcal Electronic energy + Delta-G solvation = -17856.052266 eV Core-core repulsion = 14912.570370 eV Total energy + Delta-G solvation = -2943.481896 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -45.70101 -42.87927 -36.09660 -35.54598 -35.24991 -34.42473 -31.95450 -29.69244 -29.24215 -28.87485 -26.54202 -24.29208 -22.14618 -21.49701 -20.45815 -19.46581 -18.69281 -18.18777 -17.17761 -16.66920 -16.35968 -15.47596 -15.00690 -14.73468 -14.33788 -14.17088 -13.93750 -13.75001 -13.70073 -13.46429 -13.36708 -13.14381 -13.06914 -12.80113 -12.53156 -12.09771 -11.87474 -11.78325 -11.28939 -10.87608 -10.84737 -10.45729 -9.14569 -8.91277 -6.51533 0.24003 0.75051 1.22607 1.38330 1.55461 1.76414 2.03429 2.11921 2.44253 2.60385 3.05145 3.22884 3.37264 3.70563 4.23027 4.41258 4.53422 4.57076 4.59902 4.69149 4.73820 4.87300 4.93103 4.96151 5.05373 5.11316 5.22670 5.23991 5.36228 5.63554 6.05717 6.20104 6.42051 6.51636 7.29196 7.58140 8.09064 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.026095 B = 0.007683 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.733825 B = 3643.748155 C = 4690.732446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.374 5.374 4 O 0.094 5.906 5 C -0.021 4.021 6 C -0.047 4.047 7 C -0.115 4.115 8 C 0.051 3.949 9 N -0.427 5.427 10 C -0.213 4.213 11 C -0.021 4.021 12 C 0.147 3.853 13 C -0.434 4.434 14 H 0.129 0.871 15 C 0.019 3.981 16 N -0.791 5.791 17 Si 1.007 2.993 18 H -0.258 1.258 19 H -0.267 1.267 20 H -0.245 1.245 21 O -0.198 6.198 22 H 0.080 0.920 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.111 0.889 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.458 -0.075 0.039 2.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.143 4.143 3 N -0.082 5.082 4 O 0.032 5.968 5 C -0.085 4.085 6 C -0.104 4.104 7 C -0.121 4.121 8 C -0.142 4.142 9 N -0.156 5.156 10 C -0.344 4.344 11 C -0.078 4.078 12 C 0.091 3.909 13 C -0.462 4.462 14 H 0.146 0.854 15 C -0.201 4.201 16 N -0.416 5.416 17 Si 0.825 3.175 18 H -0.182 1.182 19 H -0.191 1.191 20 H -0.168 1.168 21 O -0.088 6.088 22 H 0.099 0.901 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.130 0.870 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.776 1.631 0.027 3.219 hybrid contribution -1.618 -1.017 0.014 1.911 sum 1.158 0.614 0.041 1.311 Atomic orbital electron populations 1.20078 0.84424 1.03792 1.03586 1.25057 0.99484 0.87183 1.02540 1.73400 0.89752 1.23561 1.21499 1.84428 1.20680 1.22769 1.68941 1.24777 0.97983 0.82636 1.03101 1.20291 0.87149 0.98550 1.04386 1.19051 0.93061 0.88343 1.11598 1.21287 0.79046 0.91774 1.22058 1.69397 1.34562 0.98140 1.13489 1.22144 0.89652 0.95361 1.27198 1.19532 0.99194 0.88269 1.00832 1.21103 0.95941 0.79836 0.93989 1.19337 0.88853 0.94611 1.43356 0.85353 1.27316 1.03627 0.98127 0.91051 1.69839 1.25162 1.16368 1.30259 0.84793 0.74778 0.77925 0.79965 1.18206 1.19130 1.16802 1.84799 1.29109 1.20915 1.73971 0.90105 0.88893 0.90945 0.87012 0.89504 0.89513 0.92822 0.92098 0.91552 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.38 10.39 71.24 0.74 -1.64 16 2 C 0.02 0.82 7.59 45.19 0.34 1.16 16 3 N -0.37 -14.98 12.00 -44.59 -0.54 -15.52 16 4 O 0.09 3.48 11.07 75.17 0.83 4.32 16 5 C -0.02 -0.80 7.57 25.53 0.19 -0.61 16 6 C -0.05 -1.36 9.70 71.24 0.69 -0.66 16 7 C -0.12 -5.32 6.49 -18.74 -0.12 -5.44 16 8 C 0.05 2.68 8.12 87.00 0.71 3.39 16 9 N -0.43 -21.69 10.53 -289.80 -3.05 -24.75 16 10 C -0.21 -10.69 7.25 42.78 0.31 -10.38 16 11 C -0.02 -0.81 10.22 71.24 0.73 -0.09 16 12 C 0.15 7.96 6.82 22.95 0.16 8.11 16 13 C -0.43 -21.44 9.07 23.04 0.21 -21.23 16 14 H 0.13 5.66 7.33 -2.91 -0.02 5.64 16 15 C 0.02 0.87 5.50 85.30 0.47 1.34 16 16 N -0.79 -38.97 12.04 21.87 0.26 -38.71 16 17 Si 1.01 33.63 29.56 68.60 2.03 35.65 16 18 H -0.26 -8.30 7.11 99.48 0.71 -7.60 16 19 H -0.27 -8.59 7.11 99.48 0.71 -7.89 16 20 H -0.25 -7.68 7.11 99.48 0.71 -6.98 16 21 O -0.20 -11.23 8.30 -18.07 -0.15 -11.38 16 22 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 23 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 24 H 0.07 3.21 7.35 -2.39 -0.02 3.19 16 25 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 26 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 28 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 29 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.39 7.58 -2.39 -0.02 2.37 16 31 H 0.30 13.06 8.30 -92.71 -0.77 12.29 16 Total: -1.00 -62.88 281.12 4.97 -57.91 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.16 Total: 18.52 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 4.43 Total: -26.04 kcal Atomic # 7 Polarization: -75.65 SS G_CDS: -3.32 Total: -78.97 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: 0.68 Total: -7.06 kcal Atomic # 14 Polarization: 33.63 SS G_CDS: 2.03 Total: 35.65 kcal Total: -62.88 4.97 -57.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074111515.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.017 kcal (2) G-P(sol) polarization free energy of solvation -62.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds