Wall clock time and date at job start Mon Mar 30 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33540 * 126.03913 * 2 1 4 4 C 1.32002 * 108.65626 * 180.26167 * 3 2 1 5 5 C 1.46125 * 125.75878 * 179.69680 * 4 3 2 6 6 O 1.35313 * 126.60717 * 179.73079 * 5 4 3 7 7 C 1.34977 * 107.54047 * 179.87497 * 6 5 4 8 8 C 1.39204 * 125.50108 * 180.18230 * 7 6 5 9 9 H 1.07995 * 120.00775 * 0.27267 * 8 7 6 10 10 C 1.40358 * 119.99663 * 180.27205 * 8 7 6 11 11 N 1.30616 * 120.00257 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 120.00197 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46875 * 89.99846 * 12 10 8 14 14 H 1.48495 * 109.47315 * 210.00145 * 12 10 8 15 15 H 1.48498 * 109.46888 * 330.00193 * 12 10 8 16 16 N 1.33185 * 108.98831 * 0.39872 * 7 6 5 17 17 C 1.32293 * 109.06257 * 359.74943 * 16 7 6 18 18 C 1.50696 * 126.18704 * 180.02562 * 17 16 7 19 19 O 1.34712 * 108.47840 * 359.73266 * 4 3 2 20 20 C 1.34644 * 107.63704 * 359.97438 * 19 4 3 21 21 C 1.50706 * 126.34643 * 179.97438 * 20 19 4 22 22 H 1.08996 * 109.47255 * 270.19034 * 1 2 3 23 23 H 1.08995 * 109.47410 * 30.19716 * 1 2 3 24 24 H 1.09000 * 109.46627 * 150.19145 * 1 2 3 25 25 H 0.97000 * 120.00299 * 180.02562 * 11 10 8 26 26 H 1.09003 * 109.47550 * 270.00286 * 18 17 16 27 27 H 1.09002 * 109.47266 * 30.00516 * 18 17 16 28 28 H 1.09007 * 109.47251 * 150.00290 * 18 17 16 29 29 H 1.09001 * 109.46953 * 0.02562 * 21 20 19 30 30 H 1.09000 * 109.47318 * 120.01880 * 21 20 19 31 31 H 1.09000 * 109.47161 * 240.02511 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0798 0.0000 4 6 3.5524 0.6855 -0.0057 5 6 4.7216 1.5620 -0.0139 6 8 6.0187 1.1769 -0.0148 7 6 6.7749 2.2949 -0.0263 8 6 8.1665 2.3296 -0.0345 9 1 8.7297 1.4081 -0.0362 10 6 8.8378 3.5622 -0.0405 11 7 8.1567 4.6768 -0.0379 12 14 10.7052 3.6089 -0.0507 13 1 11.1924 3.6185 -1.4535 14 1 11.1736 4.8346 0.6445 15 1 11.2341 2.4104 0.6487 16 7 5.9746 3.3595 -0.0238 17 6 4.7155 2.9535 -0.0164 18 6 3.4955 3.8379 -0.0119 19 8 3.5782 -0.6614 -0.0035 20 6 2.3031 -1.0938 0.0044 21 6 1.8471 -2.5302 0.0089 22 1 -0.3633 0.0034 1.0276 23 1 -0.3634 0.8882 -0.5169 24 1 -0.3632 -0.8917 -0.5109 25 1 8.6206 5.5287 -0.0424 26 1 3.2066 4.0535 1.0168 27 1 3.7209 4.7706 -0.5290 28 1 2.6762 3.3295 -0.5204 29 1 2.7166 -3.1875 0.0053 30 1 1.2522 -2.7198 0.9023 31 1 1.2427 -2.7224 -0.8776 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074111521.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:32 Heat of formation + Delta-G solvation = 20.018778 kcal Electronic energy + Delta-G solvation = -17410.855906 eV Core-core repulsion = 14467.066449 eV Total energy + Delta-G solvation = -2943.789457 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.47022 -41.03630 -34.61762 -34.24560 -33.50708 -32.54556 -30.17875 -28.83928 -27.57867 -26.83027 -23.90849 -21.68000 -21.13877 -19.73091 -19.36460 -17.61829 -16.35716 -16.18904 -15.52441 -14.77444 -14.76767 -13.89440 -13.72707 -13.12623 -13.08704 -12.86582 -12.83263 -12.29357 -12.24379 -12.01001 -11.83225 -11.67532 -11.50645 -11.19793 -10.78881 -10.55988 -10.44603 -9.90836 -9.69121 -9.21299 -8.56161 -8.55124 -7.10325 -7.01685 -4.90143 1.67875 2.65503 2.90161 2.92739 2.96566 3.31896 3.62766 3.66405 4.07557 4.19552 5.03788 5.11063 5.15196 5.35973 5.45479 5.53722 5.72272 5.77081 5.81361 5.96352 6.07744 6.12999 6.47830 6.59480 6.64948 6.68133 6.75250 6.89031 6.92653 7.45164 7.62421 7.85873 8.15346 8.39720 8.51201 9.62830 9.88764 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.044229 B = 0.005350 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.919303 B = 5232.024656 C = 5839.184653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.002 3.998 3 N -0.509 5.509 4 C 0.338 3.662 5 C -0.191 4.191 6 O -0.239 6.239 7 C 0.345 3.655 8 C -0.403 4.403 9 H 0.102 0.898 10 C 0.069 3.931 11 N -0.702 5.702 12 Si 0.935 3.065 13 H -0.263 1.263 14 H -0.270 1.270 15 H -0.256 1.256 16 N -0.527 5.527 17 C 0.140 3.860 18 C -0.071 4.071 19 O -0.204 6.204 20 C -0.111 4.111 21 C -0.053 4.053 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.287 0.713 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.919 -5.648 -0.018 8.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 N -0.241 5.241 4 C 0.141 3.859 5 C -0.246 4.246 6 O -0.137 6.137 7 C 0.169 3.831 8 C -0.435 4.435 9 H 0.120 0.880 10 C -0.160 4.160 11 N -0.324 5.324 12 Si 0.757 3.243 13 H -0.188 1.188 14 H -0.195 1.195 15 H -0.180 1.180 16 N -0.256 5.256 17 C 0.001 3.999 18 C -0.128 4.128 19 O -0.094 6.094 20 C -0.164 4.164 21 C -0.110 4.110 22 H 0.087 0.913 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.748 -4.241 -0.012 7.970 hybrid contribution 0.833 -1.452 0.031 1.674 sum -5.915 -5.693 0.018 8.210 Atomic orbital electron populations 1.20010 0.87249 1.02625 1.02205 1.21403 0.97276 0.88074 1.05301 1.70535 0.98655 1.29716 1.25159 1.21799 0.90977 0.76530 0.96549 1.18295 0.79865 0.90297 1.36173 1.84564 1.14779 1.36337 1.78024 1.22170 0.93237 0.76819 0.90885 1.18392 0.85956 0.95357 1.43825 0.88034 1.26058 1.02334 0.94270 0.93299 1.69969 1.38435 0.98805 1.25190 0.85858 0.79208 0.79444 0.79746 1.18787 1.19504 1.17998 1.71360 0.97832 1.27708 1.28742 1.22321 0.95045 0.89122 0.93438 1.20168 0.92984 0.97615 1.02061 1.84526 1.29412 1.23935 1.71521 1.23006 0.81217 0.97672 1.14546 1.20026 1.01094 0.87320 1.02546 0.91256 0.90941 0.91370 0.90144 0.91516 0.91614 0.89971 0.91109 0.90447 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.80 10.22 36.01 0.37 -0.44 16 2 C 0.00 0.03 7.10 -82.90 -0.59 -0.56 16 3 N -0.51 -11.11 9.43 -8.21 -0.08 -11.19 16 4 C 0.34 8.20 8.11 -14.32 -0.12 8.08 16 5 C -0.19 -5.09 7.36 -36.08 -0.27 -5.36 16 6 O -0.24 -6.77 10.85 0.95 0.01 -6.76 16 7 C 0.35 9.80 7.69 -16.61 -0.13 9.68 16 8 C -0.40 -10.51 9.43 -38.43 -0.36 -10.87 16 9 H 0.10 2.43 7.85 -52.49 -0.41 2.02 16 10 C 0.07 1.65 5.50 -17.27 -0.10 1.56 16 11 N -0.70 -17.72 11.84 55.57 0.66 -17.07 16 12 Si 0.94 17.18 29.56 -169.99 -5.03 12.15 16 13 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 14 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 15 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 16 N -0.53 -14.95 9.33 -9.11 -0.09 -15.03 16 17 C 0.14 3.65 7.20 -82.06 -0.59 3.06 16 18 C -0.07 -1.50 10.01 36.00 0.36 -1.14 16 19 O -0.20 -4.63 10.81 3.64 0.04 -4.60 16 20 C -0.11 -2.01 7.40 -35.36 -0.26 -2.27 16 21 C -0.05 -0.64 9.97 36.01 0.36 -0.28 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.07 0.68 7.90 -51.93 -0.41 0.27 16 25 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.08 1.67 6.63 -51.92 -0.34 1.33 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 280.80 15.07 4.23 4.23 Total: -1.00 -31.56 280.80 -4.83 -36.39 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -3.26 Total: 0.41 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: -1.32 Total: 1.46 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 0.50 Total: -43.28 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.05 Total: -11.36 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.56 -4.83 -36.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074111521.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.405 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds