Wall clock time and date at job start Mon Mar 30 2020 05:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33540 * 126.03913 * 2 1 4 4 C 1.32002 * 108.65626 * 180.26167 * 3 2 1 5 5 C 1.46125 * 125.75878 * 179.69680 * 4 3 2 6 6 O 1.35313 * 126.60717 * 179.73079 * 5 4 3 7 7 C 1.34977 * 107.54047 * 179.87497 * 6 5 4 8 8 C 1.39204 * 125.50108 * 180.18230 * 7 6 5 9 9 H 1.07995 * 120.00775 * 0.27267 * 8 7 6 10 10 C 1.40358 * 119.99663 * 180.27205 * 8 7 6 11 11 N 1.30616 * 120.00257 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 120.00197 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46875 * 89.99846 * 12 10 8 14 14 H 1.48495 * 109.47315 * 210.00145 * 12 10 8 15 15 H 1.48498 * 109.46888 * 330.00193 * 12 10 8 16 16 N 1.33185 * 108.98831 * 0.39872 * 7 6 5 17 17 C 1.32293 * 109.06257 * 359.74943 * 16 7 6 18 18 C 1.50696 * 126.18704 * 180.02562 * 17 16 7 19 19 O 1.34712 * 108.47840 * 359.73266 * 4 3 2 20 20 C 1.34644 * 107.63704 * 359.97438 * 19 4 3 21 21 C 1.50706 * 126.34643 * 179.97438 * 20 19 4 22 22 H 1.08996 * 109.47255 * 270.19034 * 1 2 3 23 23 H 1.08995 * 109.47410 * 30.19716 * 1 2 3 24 24 H 1.09000 * 109.46627 * 150.19145 * 1 2 3 25 25 H 0.97000 * 120.00299 * 180.02562 * 11 10 8 26 26 H 1.09003 * 109.47550 * 270.00286 * 18 17 16 27 27 H 1.09002 * 109.47266 * 30.00516 * 18 17 16 28 28 H 1.09007 * 109.47251 * 150.00290 * 18 17 16 29 29 H 1.09001 * 109.46953 * 0.02562 * 21 20 19 30 30 H 1.09000 * 109.47318 * 120.01880 * 21 20 19 31 31 H 1.09000 * 109.47161 * 240.02511 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0798 0.0000 4 6 3.5524 0.6855 -0.0057 5 6 4.7216 1.5620 -0.0139 6 8 6.0187 1.1769 -0.0148 7 6 6.7749 2.2949 -0.0263 8 6 8.1665 2.3296 -0.0345 9 1 8.7297 1.4081 -0.0362 10 6 8.8378 3.5622 -0.0405 11 7 8.1567 4.6768 -0.0379 12 14 10.7052 3.6089 -0.0507 13 1 11.1924 3.6185 -1.4535 14 1 11.1736 4.8346 0.6445 15 1 11.2341 2.4104 0.6487 16 7 5.9746 3.3595 -0.0238 17 6 4.7155 2.9535 -0.0164 18 6 3.4955 3.8379 -0.0119 19 8 3.5782 -0.6614 -0.0035 20 6 2.3031 -1.0938 0.0044 21 6 1.8471 -2.5302 0.0089 22 1 -0.3633 0.0034 1.0276 23 1 -0.3634 0.8882 -0.5169 24 1 -0.3632 -0.8917 -0.5109 25 1 8.6206 5.5287 -0.0424 26 1 3.2066 4.0535 1.0168 27 1 3.7209 4.7706 -0.5290 28 1 2.6762 3.3295 -0.5204 29 1 2.7166 -3.1875 0.0053 30 1 1.2522 -2.7198 0.9023 31 1 1.2427 -2.7224 -0.8776 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074111521.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:49:32 Heat of formation + Delta-G solvation = -4.226138 kcal Electronic energy + Delta-G solvation = -17411.907245 eV Core-core repulsion = 14467.066449 eV Total energy + Delta-G solvation = -2944.840795 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -44.11548 -43.03249 -36.24961 -36.11677 -35.38535 -34.04602 -31.96838 -29.99095 -29.43987 -28.49151 -25.46726 -23.42386 -22.94597 -21.35643 -21.28893 -19.57010 -18.11851 -17.86276 -17.31878 -16.76776 -16.32158 -15.55206 -15.20118 -14.79604 -14.17743 -14.09073 -14.03614 -13.81946 -13.74303 -13.56336 -13.19446 -13.08257 -13.06023 -12.91862 -12.59738 -12.04275 -12.00873 -11.69298 -11.32868 -11.11203 -10.60847 -10.21302 -8.88291 -8.82276 -6.87034 -0.06165 1.03124 1.37816 1.46322 1.57933 1.71843 1.90901 2.07817 2.30937 2.33856 3.06817 3.63328 3.86780 3.88977 4.06468 4.22009 4.39303 4.68434 4.71052 4.79201 4.82573 4.84929 4.89832 4.97622 4.99092 5.08648 5.15232 5.20134 5.46332 5.62784 5.69595 5.93710 6.21839 6.45178 6.84772 7.62417 8.11934 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.044229 B = 0.005350 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.919303 B = 5232.024656 C = 5839.184653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.020 4.020 3 N -0.502 5.502 4 C 0.293 3.707 5 C -0.211 4.211 6 O -0.261 6.261 7 C 0.309 3.691 8 C -0.427 4.427 9 H 0.112 0.888 10 C 0.027 3.973 11 N -0.741 5.741 12 Si 1.022 2.978 13 H -0.254 1.254 14 H -0.257 1.257 15 H -0.249 1.249 16 N -0.557 5.557 17 C 0.118 3.882 18 C -0.058 4.058 19 O -0.226 6.226 20 C -0.100 4.100 21 C -0.054 4.054 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.299 0.701 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.941 -6.882 0.009 10.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.142 4.142 3 N -0.235 5.235 4 C 0.096 3.904 5 C -0.265 4.265 6 O -0.160 6.160 7 C 0.133 3.867 8 C -0.459 4.459 9 H 0.130 0.870 10 C -0.198 4.198 11 N -0.363 5.363 12 Si 0.838 3.162 13 H -0.178 1.178 14 H -0.181 1.181 15 H -0.173 1.173 16 N -0.288 5.288 17 C -0.020 4.020 18 C -0.115 4.115 19 O -0.116 6.116 20 C -0.152 4.152 21 C -0.110 4.110 22 H 0.105 0.895 23 H 0.092 0.908 24 H 0.122 0.878 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.820 -5.487 0.015 9.553 hybrid contribution 0.905 -1.256 0.024 1.548 sum -6.915 -6.743 0.039 9.659 Atomic orbital electron populations 1.20220 0.82978 1.04487 1.03906 1.22360 0.99721 0.86883 1.05218 1.70496 0.98130 1.31557 1.23270 1.21619 0.91050 0.77122 1.00648 1.18829 0.79936 0.91477 1.36303 1.84509 1.15885 1.37009 1.78573 1.22826 0.94342 0.77037 0.92514 1.18996 0.85505 0.97152 1.44224 0.86964 1.27270 1.07920 0.92801 0.91840 1.70027 1.41285 0.99893 1.25133 0.84626 0.71289 0.80023 0.80236 1.17791 1.18092 1.17256 1.71289 0.98846 1.28094 1.30599 1.22936 0.95667 0.89766 0.93618 1.20171 0.91206 0.97110 1.03010 1.84513 1.32225 1.23520 1.71299 1.24370 0.79493 1.00538 1.10834 1.20410 1.01963 0.83054 1.05567 0.89476 0.90820 0.87848 0.88917 0.90249 0.90734 0.89343 0.90856 0.87273 0.87160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.26 10.22 71.24 0.73 -0.53 16 2 C -0.02 -0.67 7.10 41.62 0.30 -0.38 16 3 N -0.50 -21.82 9.43 -293.40 -2.77 -24.59 16 4 C 0.29 14.64 8.11 86.72 0.70 15.35 16 5 C -0.21 -11.87 7.36 24.54 0.18 -11.69 16 6 O -0.26 -15.76 10.85 -19.50 -0.21 -15.97 16 7 C 0.31 18.58 7.69 84.72 0.65 19.23 16 8 C -0.43 -23.17 9.43 23.02 0.22 -22.95 16 9 H 0.11 5.58 7.85 -2.91 -0.02 5.55 16 10 C 0.03 1.29 5.50 85.39 0.47 1.76 16 11 N -0.74 -38.37 11.84 21.90 0.26 -38.11 16 12 Si 1.02 34.82 29.56 68.60 2.03 36.84 16 13 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 14 H -0.26 -8.14 7.11 99.48 0.71 -7.43 16 15 H -0.25 -8.13 7.11 99.48 0.71 -7.43 16 16 N -0.56 -33.34 9.33 -295.52 -2.76 -36.10 16 17 C 0.12 6.43 7.20 42.71 0.31 6.73 16 18 C -0.06 -2.50 10.01 71.23 0.71 -1.79 16 19 O -0.23 -10.40 10.81 -9.89 -0.11 -10.51 16 20 C -0.10 -3.42 7.40 25.01 0.19 -3.23 16 21 C -0.05 -1.07 9.97 71.24 0.71 -0.36 16 22 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.10 1.49 7.90 -2.39 -0.02 1.47 16 25 H 0.30 13.50 8.29 -92.71 -0.77 12.73 16 26 H 0.08 3.17 8.14 -2.39 -0.02 3.16 16 27 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 28 H 0.09 3.65 6.63 -2.38 -0.02 3.64 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -74.20 280.80 2.76 -71.43 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.16 Total: 14.87 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 5.16 Total: 2.13 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -5.26 Total: -98.80 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.32 Total: -26.48 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.84 kcal Total: -74.20 2.76 -71.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074111521.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.207 kcal (2) G-P(sol) polarization free energy of solvation -74.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds