Wall clock time and date at job start Mon Mar 30 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.32420 * 126.32844 * 90.02039 * 3 2 1 5 5 C 1.32262 * 109.26469 * 179.97438 * 4 3 2 6 6 C 1.46401 * 125.29969 * 180.02562 * 5 4 3 7 7 N 1.31833 * 125.75962 * 359.69383 * 6 5 4 8 8 C 1.33568 * 108.66563 * 179.89519 * 7 6 5 9 9 C 1.35184 * 107.90672 * 0.36388 * 8 7 6 10 10 C 1.50707 * 126.34561 * 179.78182 * 9 8 7 11 11 O 1.34596 * 107.30426 * 359.77779 * 9 8 7 12 12 O 1.34756 * 109.39362 * 359.97438 * 5 4 3 13 13 C 1.35471 * 107.56490 * 359.76542 * 12 5 4 14 14 C 1.39312 * 126.79256 * 180.25828 * 13 12 5 15 15 H 1.07998 * 120.00559 * 180.12533 * 14 13 12 16 16 C 1.40332 * 119.99502 * 0.12402 * 14 13 12 17 17 N 1.30698 * 119.99979 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 119.99898 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47309 * 60.00152 * 18 16 14 20 20 H 1.48506 * 109.47433 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47281 * 299.99896 * 18 16 14 22 22 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 23 23 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 25 25 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 26 26 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 27 27 H 1.07998 * 126.04400 * 180.10965 * 8 7 6 28 28 H 1.08999 * 109.46673 * 180.02562 * 10 9 8 29 29 H 1.09001 * 109.46759 * 300.02131 * 10 9 8 30 30 H 1.08996 * 109.47425 * 60.02229 * 10 9 8 31 31 H 0.97001 * 120.00184 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2943 2.1603 1.0668 5 6 2.7161 3.3522 0.6787 6 6 3.1036 4.4449 1.5727 7 7 3.0844 4.4059 2.8903 8 6 3.5063 5.5833 3.3590 9 6 3.7869 6.3757 2.3003 10 6 4.2895 7.7955 2.3557 11 8 3.5343 5.6617 1.1877 12 8 2.7348 3.4037 -0.6677 13 6 2.3151 2.2010 -1.1287 14 6 2.1869 1.8168 -2.4617 15 1 1.8378 0.8246 -2.7066 16 6 2.5116 2.7192 -3.4862 17 7 2.9336 3.9201 -3.1898 18 14 2.3405 2.2040 -5.2735 19 1 0.9279 1.8397 -5.5506 20 1 2.7438 3.3298 -6.1540 21 1 3.2146 1.0326 -5.5369 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5137 0.8901 26 1 1.8933 -0.5138 -0.8899 27 1 3.6020 5.8556 4.3997 28 1 4.4228 8.1734 1.3420 29 1 3.5654 8.4168 2.8828 30 1 5.2434 7.8230 2.8822 31 1 3.1584 4.5438 -3.8979 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074111534.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:35 Heat of formation + Delta-G solvation = 14.340208 kcal Electronic energy + Delta-G solvation = -17483.824479 eV Core-core repulsion = 14539.788781 eV Total energy + Delta-G solvation = -2944.035698 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.50671 -41.08113 -34.32663 -34.20139 -33.90195 -32.25771 -31.38386 -29.29634 -27.32128 -24.82090 -23.15928 -22.13877 -21.31503 -20.08830 -19.22944 -17.71551 -16.77994 -16.14357 -15.55142 -14.75396 -14.63100 -13.98229 -13.92237 -13.54601 -13.22792 -12.88896 -12.81663 -12.46016 -12.00777 -11.78893 -11.59199 -11.47010 -11.29871 -10.75895 -10.75752 -10.48120 -10.15802 -9.94702 -9.78006 -9.57774 -9.00662 -8.49288 -7.34755 -7.28161 -4.81543 1.72193 2.63929 2.82416 2.86438 2.98417 3.15628 3.48082 3.56623 4.06435 4.28516 4.78068 5.12909 5.25459 5.37205 5.56981 5.69180 5.77422 5.88575 5.99313 6.25572 6.30350 6.43080 6.53897 6.60010 6.61156 6.68565 6.88947 6.95350 7.03603 7.35442 7.75340 7.88999 8.11479 8.20594 8.44317 9.39634 9.67915 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.007322 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.102931 B = 3823.204232 C = 5056.893583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.005 4.005 3 C -0.164 4.164 4 N -0.371 5.371 5 C 0.036 3.964 6 C 0.334 3.666 7 N -0.483 5.483 8 C -0.030 4.030 9 C -0.095 4.095 10 C -0.057 4.057 11 O -0.194 6.194 12 O -0.179 6.179 13 C 0.196 3.804 14 C -0.399 4.399 15 H 0.118 0.882 16 C 0.058 3.942 17 N -0.743 5.743 18 Si 0.932 3.068 19 H -0.257 1.257 20 H -0.272 1.272 21 H -0.257 1.257 22 H 0.053 0.947 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.178 0.822 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.510 2.553 0.864 2.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.044 4.044 3 C -0.302 4.302 4 N -0.102 5.102 5 C -0.153 4.153 6 C 0.135 3.865 7 N -0.213 5.213 8 C -0.171 4.171 9 C -0.149 4.149 10 C -0.114 4.114 11 O -0.081 6.081 12 O -0.068 6.068 13 C 0.139 3.861 14 C -0.427 4.427 15 H 0.136 0.864 16 C -0.167 4.167 17 N -0.367 5.367 18 Si 0.754 3.246 19 H -0.181 1.181 20 H -0.197 1.197 21 H -0.181 1.181 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.195 0.805 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.417 2.308 1.811 2.963 hybrid contribution 0.307 0.896 -1.798 2.033 sum 0.724 3.204 0.013 3.285 Atomic orbital electron populations 1.21746 0.96599 0.99823 1.01845 1.19290 0.94246 0.89940 1.00884 1.21551 1.22188 0.99263 0.87212 1.69353 1.08059 1.00212 1.32566 1.19244 1.24138 0.92557 0.79332 1.21021 0.96479 0.81443 0.87558 1.70693 1.21749 1.22821 1.06065 1.23010 1.04199 0.90000 0.99938 1.23399 1.10085 0.97090 0.84318 1.20095 1.00871 0.86805 1.03607 1.84532 1.64753 1.23680 1.35148 1.84921 1.69368 1.33839 1.18627 1.20564 0.90111 0.80942 0.94517 1.18960 1.36336 1.00874 0.86496 0.86388 1.26403 0.92554 0.94162 1.03610 1.69724 1.24879 1.04698 1.37382 0.85930 0.80530 0.79642 0.78464 1.18069 1.19691 1.18073 0.92795 0.93773 0.93235 0.92405 0.91754 0.80460 0.90842 0.90109 0.90102 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.90 37.16 0.37 -2.18 16 2 C -0.01 -0.11 6.28 -27.88 -0.18 -0.29 16 3 C -0.16 -4.16 6.50 -81.64 -0.53 -4.69 16 4 N -0.37 -10.13 11.25 -7.18 -0.08 -10.22 16 5 C 0.04 0.99 8.14 -14.08 -0.11 0.88 16 6 C 0.33 8.57 8.19 -14.27 -0.12 8.45 16 7 N -0.48 -11.43 11.32 -11.95 -0.14 -11.57 16 8 C -0.03 -0.56 11.80 -17.88 -0.21 -0.77 16 9 C -0.09 -1.73 7.40 -35.39 -0.26 -1.99 16 10 C -0.06 -0.69 10.44 36.01 0.38 -0.31 16 11 O -0.19 -4.54 10.81 3.83 0.04 -4.50 16 12 O -0.18 -5.18 9.19 1.11 0.01 -5.17 16 13 C 0.20 5.25 6.82 -38.49 -0.26 4.98 16 14 C -0.40 -9.65 9.07 -38.39 -0.35 -10.00 16 15 H 0.12 2.53 7.33 -52.49 -0.38 2.15 16 16 C 0.06 1.35 5.50 -17.25 -0.09 1.25 16 17 N -0.74 -18.52 12.04 55.57 0.67 -17.85 16 18 Si 0.93 16.55 29.56 -169.99 -5.03 11.52 16 19 H -0.26 -4.43 7.11 56.52 0.40 -4.03 16 20 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 21 H -0.26 -4.43 7.11 56.52 0.40 -4.03 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 26 H 0.06 1.19 7.58 -51.93 -0.39 0.80 16 27 H 0.18 2.49 8.06 -52.49 -0.42 2.07 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.29 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 283.79 15.07 4.28 4.28 Total: -1.00 -31.28 283.79 -4.91 -36.20 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -3.29 Total: 1.97 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -1.37 Total: -4.67 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.45 Total: -39.63 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.05 Total: -9.66 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.52 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -31.28 -4.91 -36.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074111534.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.536 kcal (2) G-P(sol) polarization free energy of solvation -31.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds