Wall clock time and date at job start Mon Mar 30 2020 05:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 N 1.32420 * 126.32844 * 90.02039 * 3 2 1 5 5 C 1.32262 * 109.26469 * 179.97438 * 4 3 2 6 6 C 1.46401 * 125.29969 * 180.02562 * 5 4 3 7 7 N 1.31833 * 125.75962 * 359.69383 * 6 5 4 8 8 C 1.33568 * 108.66563 * 179.89519 * 7 6 5 9 9 C 1.35184 * 107.90672 * 0.36388 * 8 7 6 10 10 C 1.50707 * 126.34561 * 179.78182 * 9 8 7 11 11 O 1.34596 * 107.30426 * 359.77779 * 9 8 7 12 12 O 1.34756 * 109.39362 * 359.97438 * 5 4 3 13 13 C 1.35471 * 107.56490 * 359.76542 * 12 5 4 14 14 C 1.39312 * 126.79256 * 180.25828 * 13 12 5 15 15 H 1.07998 * 120.00559 * 180.12533 * 14 13 12 16 16 C 1.40332 * 119.99502 * 0.12402 * 14 13 12 17 17 N 1.30698 * 119.99979 * 359.97438 * 16 14 13 18 18 Si 1.86791 * 119.99898 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47309 * 60.00152 * 18 16 14 20 20 H 1.48506 * 109.47433 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47281 * 299.99896 * 18 16 14 22 22 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 23 23 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 25 25 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 26 26 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 27 27 H 1.07998 * 126.04400 * 180.10965 * 8 7 6 28 28 H 1.08999 * 109.46673 * 180.02562 * 10 9 8 29 29 H 1.09001 * 109.46759 * 300.02131 * 10 9 8 30 30 H 1.08996 * 109.47425 * 60.02229 * 10 9 8 31 31 H 0.97001 * 120.00184 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2943 2.1603 1.0668 5 6 2.7161 3.3522 0.6787 6 6 3.1036 4.4449 1.5727 7 7 3.0844 4.4059 2.8903 8 6 3.5063 5.5833 3.3590 9 6 3.7869 6.3757 2.3003 10 6 4.2895 7.7955 2.3557 11 8 3.5343 5.6617 1.1877 12 8 2.7348 3.4037 -0.6677 13 6 2.3151 2.2010 -1.1287 14 6 2.1869 1.8168 -2.4617 15 1 1.8378 0.8246 -2.7066 16 6 2.5116 2.7192 -3.4862 17 7 2.9336 3.9201 -3.1898 18 14 2.3405 2.2040 -5.2735 19 1 0.9279 1.8397 -5.5506 20 1 2.7438 3.3298 -6.1540 21 1 3.2146 1.0326 -5.5369 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8934 -0.5137 0.8901 26 1 1.8933 -0.5138 -0.8899 27 1 3.6020 5.8556 4.3997 28 1 4.4228 8.1734 1.3420 29 1 3.5654 8.4168 2.8828 30 1 5.2434 7.8230 2.8822 31 1 3.1584 4.5438 -3.8979 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074111534.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:35 Heat of formation + Delta-G solvation = -10.704064 kcal Electronic energy + Delta-G solvation = -17484.910480 eV Core-core repulsion = 14539.788781 eV Total energy + Delta-G solvation = -2945.121699 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.095 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.19062 -43.02758 -36.15051 -36.00323 -35.65221 -33.80292 -32.98016 -31.07356 -28.91864 -26.45929 -24.81241 -23.91391 -22.90763 -21.92638 -21.06056 -19.60502 -18.53758 -17.87744 -17.26134 -16.63826 -16.30478 -15.71369 -15.42172 -15.13445 -14.73063 -14.17385 -14.06238 -13.83980 -13.44842 -13.24517 -13.15874 -13.10298 -13.06510 -12.50440 -12.15448 -12.07917 -11.77330 -11.68042 -11.48034 -11.38039 -10.97245 -10.18984 -9.14292 -9.03972 -6.69658 -0.01377 0.99843 1.35990 1.47075 1.52465 1.54929 1.80169 2.07705 2.30343 2.36470 2.94050 3.54947 3.86446 4.03528 4.24051 4.29074 4.40593 4.65681 4.70945 4.72066 4.74868 4.79800 4.93643 5.12051 5.15401 5.16656 5.25831 5.34023 5.51307 5.56590 5.88017 6.02862 6.23637 6.35261 6.75335 7.43943 7.95336 Molecular weight = 248.09amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.007322 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.102931 B = 3823.204232 C = 5056.893583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.006 4.006 3 C -0.175 4.175 4 N -0.394 5.394 5 C -0.002 4.002 6 C 0.287 3.713 7 N -0.496 5.496 8 C -0.044 4.044 9 C -0.078 4.078 10 C -0.056 4.056 11 O -0.217 6.217 12 O -0.207 6.207 13 C 0.157 3.843 14 C -0.406 4.406 15 H 0.145 0.855 16 C 0.013 3.987 17 N -0.787 5.787 18 Si 1.017 2.983 19 H -0.244 1.244 20 H -0.268 1.268 21 H -0.243 1.243 22 H 0.046 0.954 23 H 0.084 0.916 24 H 0.032 0.968 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.226 0.774 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.489 2.638 0.137 2.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 C -0.313 4.313 4 N -0.125 5.125 5 C -0.189 4.189 6 C 0.088 3.912 7 N -0.229 5.229 8 C -0.184 4.184 9 C -0.131 4.131 10 C -0.112 4.112 11 O -0.105 6.105 12 O -0.097 6.097 13 C 0.100 3.900 14 C -0.434 4.434 15 H 0.162 0.838 16 C -0.209 4.209 17 N -0.412 5.412 18 Si 0.833 3.167 19 H -0.167 1.167 20 H -0.192 1.192 21 H -0.167 1.167 22 H 0.065 0.935 23 H 0.103 0.897 24 H 0.051 0.949 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.243 0.757 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.398 2.401 1.113 2.676 hybrid contribution 0.375 1.019 -1.482 1.837 sum 0.773 3.420 -0.370 3.525 Atomic orbital electron populations 1.21663 0.94732 1.02035 1.00662 1.19485 0.95789 0.87078 1.02028 1.22370 1.21538 1.00998 0.86401 1.69324 1.09082 1.00613 1.33442 1.19800 1.25868 0.93819 0.79396 1.20940 1.00084 0.82209 0.88000 1.70615 1.21479 1.25326 1.05442 1.23786 1.04053 0.88406 1.02203 1.24759 1.06737 0.98765 0.82867 1.20489 1.03133 0.82832 1.04739 1.84525 1.64778 1.23610 1.37574 1.84856 1.70305 1.35159 1.19390 1.21292 0.91514 0.81007 0.96160 1.19625 1.35413 1.02279 0.86039 0.83761 1.27656 0.91016 0.93468 1.08740 1.69831 1.25410 1.06337 1.39593 0.84718 0.81241 0.79528 0.71253 1.16678 1.19233 1.16675 0.93524 0.89740 0.94876 0.91818 0.89893 0.75737 0.90778 0.86760 0.86746 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 9.90 71.98 0.71 -3.93 16 2 C -0.01 -0.23 6.28 29.85 0.19 -0.05 16 3 C -0.17 -9.18 6.50 42.92 0.28 -8.90 16 4 N -0.39 -22.73 11.25 -289.98 -3.26 -25.99 16 5 C 0.00 -0.12 8.14 86.75 0.71 0.59 16 6 C 0.29 15.50 8.19 86.82 0.71 16.21 16 7 N -0.50 -24.15 11.32 -305.33 -3.46 -27.61 16 8 C -0.04 -1.58 11.80 83.72 0.99 -0.60 16 9 C -0.08 -2.77 7.40 24.98 0.18 -2.59 16 10 C -0.06 -1.16 10.44 71.24 0.74 -0.41 16 11 O -0.22 -10.58 10.81 -9.22 -0.10 -10.68 16 12 O -0.21 -12.76 9.19 -18.94 -0.17 -12.94 16 13 C 0.16 8.75 6.82 22.98 0.16 8.91 16 14 C -0.41 -19.87 9.07 23.04 0.21 -19.66 16 15 H 0.14 6.02 7.33 -2.91 -0.02 6.00 16 16 C 0.01 0.58 5.50 85.37 0.47 1.05 16 17 N -0.79 -40.31 12.04 21.90 0.26 -40.05 16 18 Si 1.02 32.59 29.56 68.60 2.03 34.62 16 19 H -0.24 -7.28 7.11 99.48 0.71 -6.57 16 20 H -0.27 -8.33 7.11 99.48 0.71 -7.62 16 21 H -0.24 -7.28 7.11 99.48 0.71 -6.57 16 22 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 24 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.08 2.97 7.58 -2.39 -0.02 2.95 16 27 H 0.23 5.61 8.06 -2.91 -0.02 5.58 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.30 13.76 8.29 -92.71 -0.77 12.99 16 Total: -1.00 -74.61 283.79 1.80 -72.82 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.15 Total: 19.22 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 5.35 Total: -9.38 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -6.46 Total: -93.65 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.27 Total: -23.62 kcal Atomic # 14 Polarization: 32.59 SS G_CDS: 2.03 Total: 34.62 kcal Total: -74.61 1.80 -72.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074111534.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.111 kcal (2) G-P(sol) polarization free energy of solvation -74.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds