Wall clock time and date at job start Mon Mar 30 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47406 * 2 1 4 4 C 1.50704 * 109.47161 * 120.00406 * 2 1 3 5 5 N 1.30074 * 124.97851 * 300.02497 * 4 2 1 6 6 C 1.35941 * 109.73360 * 179.97438 * 5 4 2 7 7 C 1.39685 * 133.45860 * 180.02562 * 6 5 4 8 8 C 1.37684 * 119.80926 * 179.97438 * 7 6 5 9 9 C 1.38925 * 120.49380 * 359.97438 * 8 7 6 10 10 F 1.35103 * 119.80835 * 180.02562 * 9 8 7 11 11 C 1.38160 * 120.38405 * 0.23597 * 9 8 7 12 12 C 1.38713 * 119.80991 * 359.52748 * 11 9 8 13 13 N 1.36567 * 124.98436 * 120.00050 * 4 2 1 14 14 C 1.37324 * 126.40028 * 359.97438 * 13 4 2 15 15 H 1.07995 * 119.99366 * 33.72511 * 14 13 4 16 16 C 1.38901 * 119.99818 * 213.72441 * 14 13 4 17 17 N 1.31385 * 120.00281 * 20.13269 * 16 14 13 18 18 Si 1.86799 * 119.99535 * 200.13348 * 16 14 13 19 19 H 1.48503 * 109.47641 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47355 * 120.00340 * 18 16 14 21 21 H 1.48511 * 109.47211 * 240.00058 * 18 16 14 22 22 H 1.08996 * 109.47668 * 299.99908 * 1 2 3 23 23 H 1.09007 * 109.47457 * 59.99989 * 1 2 3 24 24 H 1.09003 * 109.47542 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47043 * 240.00072 * 2 1 3 26 26 H 1.09004 * 109.46961 * 60.00021 * 3 2 1 27 27 H 1.09001 * 109.47275 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47439 * 300.00366 * 3 2 1 29 29 H 1.07998 * 120.09351 * 359.97392 * 7 6 5 30 30 H 1.08002 * 119.75628 * 180.02562 * 8 7 6 31 31 H 1.08006 * 120.09811 * 179.69810 * 11 9 8 32 32 H 0.97008 * 119.99696 * 177.98771 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7780 -0.3519 2.4546 6 6 2.3834 -1.2087 3.3191 7 6 2.4384 -1.2884 4.7126 8 6 3.1532 -2.3006 5.3127 9 6 3.8206 -3.2447 4.5425 10 9 4.5175 -4.2325 5.1458 11 6 3.7793 -3.1770 3.1632 12 6 3.0593 -2.1661 2.5436 13 7 2.8207 -1.8256 1.2237 14 6 3.2877 -2.4867 0.1144 15 1 3.5323 -1.9338 -0.7805 16 6 3.4454 -3.8664 0.1434 17 7 2.8031 -4.5824 1.0384 18 14 4.5707 -4.7039 -1.0902 19 1 5.1718 -3.6825 -1.9851 20 1 5.6486 -5.4251 -0.3670 21 1 3.7857 -5.6702 -1.9000 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.9216 -0.5580 5.3175 30 1 3.1948 -2.3616 6.3902 31 1 4.3039 -3.9106 2.5689 32 1 2.8904 -5.5486 1.0401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075975003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:12 Heat of formation + Delta-G solvation = 6.236049 kcal Electronic energy + Delta-G solvation = -18035.458196 eV Core-core repulsion = 15103.443865 eV Total energy + Delta-G solvation = -2932.014331 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.93125 -40.91724 -36.32361 -34.56549 -33.79038 -31.28217 -29.37381 -27.45471 -26.67211 -25.32516 -23.04495 -21.29941 -20.78395 -19.00378 -17.86239 -16.75321 -15.82857 -15.30854 -14.96785 -14.68562 -14.24598 -14.02498 -13.77349 -13.54730 -12.98773 -12.50399 -12.27305 -12.18047 -11.83881 -11.71446 -11.39368 -11.38437 -10.88889 -10.78480 -10.73597 -10.50038 -10.27915 -10.15688 -9.52944 -9.00376 -8.79094 -7.40203 -6.92220 -6.78714 -4.60468 1.91551 2.48156 2.91329 2.98189 3.02800 3.69342 3.88541 4.36562 4.61232 4.86124 5.07749 5.32888 5.54177 5.64351 5.70032 5.82935 5.94899 6.04841 6.16321 6.31391 6.34708 6.44445 6.50595 6.64707 6.72972 6.74881 6.86673 6.95379 7.06312 7.15828 7.36197 7.71083 7.94248 8.04679 8.53794 9.10630 9.27845 10.12204 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.012684 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.903505 B = 2207.055544 C = 3839.294678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.003 4.003 3 C -0.136 4.136 4 C 0.225 3.775 5 N -0.520 5.520 6 C 0.019 3.981 7 C -0.058 4.058 8 C -0.176 4.176 9 C 0.052 3.948 10 F -0.157 7.157 11 C -0.074 4.074 12 C 0.063 3.937 13 N -0.284 5.284 14 C -0.361 4.361 15 H 0.112 0.888 16 C 0.054 3.946 17 N -0.819 5.819 18 Si 0.928 3.072 19 H -0.261 1.261 20 H -0.271 1.271 21 H -0.273 1.273 22 H 0.062 0.938 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.007 3.956 -1.039 4.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.024 4.024 3 C -0.194 4.194 4 C -0.036 4.036 5 N -0.242 5.242 6 C -0.105 4.105 7 C -0.077 4.077 8 C -0.197 4.197 9 C 0.031 3.969 10 F -0.136 7.136 11 C -0.096 4.096 12 C -0.054 4.054 13 N 0.047 4.953 14 C -0.489 4.489 15 H 0.129 0.871 16 C -0.159 4.159 17 N -0.448 5.448 18 Si 0.751 3.249 19 H -0.184 1.184 20 H -0.196 1.196 21 H -0.199 1.199 22 H 0.081 0.919 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.139 0.861 31 H 0.145 0.855 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.454 4.320 -0.893 4.435 hybrid contribution 1.045 -1.679 -0.670 2.088 sum 0.592 2.641 -1.563 3.125 Atomic orbital electron populations 1.21706 0.93997 1.01955 1.01486 1.19406 0.95816 0.94741 0.92397 1.21752 1.00842 0.95087 1.01685 1.23180 0.94929 0.91174 0.94358 1.70115 1.26611 1.29056 0.98383 1.18911 1.02593 0.95369 0.93613 1.19695 0.99231 0.97805 0.91017 1.20434 1.03203 0.97185 0.98902 1.17114 0.99788 0.89681 0.90342 1.91373 1.77810 1.60617 1.83761 1.19837 1.00593 0.97742 0.91387 1.18220 1.03521 0.98620 0.84999 1.41204 1.31112 1.18988 1.04011 1.19701 1.45920 0.90327 0.92968 0.87069 1.25593 0.95874 0.96537 0.97937 1.70039 1.33579 1.07845 1.33295 0.85862 0.79783 0.79415 0.79800 1.18443 1.19597 1.19874 0.91916 0.92785 0.92757 0.89627 0.91804 0.93047 0.92724 0.86244 0.86108 0.85504 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.20 9.17 37.15 0.34 -1.86 16 2 C 0.00 -0.06 3.25 -91.78 -0.30 -0.36 16 3 C -0.14 -2.12 9.17 37.16 0.34 -1.78 16 4 C 0.23 5.26 6.34 -154.36 -0.98 4.28 16 5 N -0.52 -12.50 11.26 -8.09 -0.09 -12.59 16 6 C 0.02 0.47 7.22 -84.64 -0.61 -0.14 16 7 C -0.06 -1.22 10.10 -39.24 -0.40 -1.61 16 8 C -0.18 -3.54 9.99 -39.53 -0.39 -3.94 16 9 C 0.05 1.18 7.29 -39.36 -0.29 0.89 16 10 F -0.16 -3.35 17.26 2.25 0.04 -3.31 16 11 C -0.07 -1.85 8.53 -39.43 -0.34 -2.18 16 12 C 0.06 1.64 6.15 -83.87 -0.52 1.12 16 13 N -0.28 -7.26 2.86 -56.64 -0.16 -7.42 16 14 C -0.36 -8.98 9.29 -14.85 -0.14 -9.11 16 15 H 0.11 2.57 7.36 -52.49 -0.39 2.18 16 16 C 0.05 1.31 4.53 -17.50 -0.08 1.23 16 17 N -0.82 -21.11 10.61 55.49 0.59 -20.52 16 18 Si 0.93 18.36 29.60 -169.99 -5.03 13.33 16 19 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 20 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 25 H 0.09 1.57 6.98 -51.93 -0.36 1.21 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 30 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 31 H 0.13 3.25 6.28 -52.48 -0.33 2.92 16 32 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 277.84 15.07 4.19 4.19 Total: -1.00 -28.08 277.84 -7.42 -35.50 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.59 Total: 4.31 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -3.35 Total: -13.47 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.34 Total: -40.54 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.04 Total: -3.31 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.08 -7.42 -35.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075975003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.739 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds