Wall clock time and date at job start Mon Mar 30 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52997 * 109.47406 * 2 1 4 4 C 1.50704 * 109.47161 * 120.00406 * 2 1 3 5 5 N 1.30074 * 124.97851 * 300.02497 * 4 2 1 6 6 C 1.35941 * 109.73360 * 179.97438 * 5 4 2 7 7 C 1.39685 * 133.45860 * 180.02562 * 6 5 4 8 8 C 1.37684 * 119.80926 * 179.97438 * 7 6 5 9 9 C 1.38925 * 120.49380 * 359.97438 * 8 7 6 10 10 F 1.35103 * 119.80835 * 180.02562 * 9 8 7 11 11 C 1.38160 * 120.38405 * 0.23597 * 9 8 7 12 12 C 1.38713 * 119.80991 * 359.52748 * 11 9 8 13 13 N 1.36567 * 124.98436 * 120.00050 * 4 2 1 14 14 C 1.37324 * 126.40028 * 359.97438 * 13 4 2 15 15 H 1.07995 * 119.99366 * 33.72511 * 14 13 4 16 16 C 1.38901 * 119.99818 * 213.72441 * 14 13 4 17 17 N 1.31385 * 120.00281 * 20.13269 * 16 14 13 18 18 Si 1.86799 * 119.99535 * 200.13348 * 16 14 13 19 19 H 1.48503 * 109.47641 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47355 * 120.00340 * 18 16 14 21 21 H 1.48511 * 109.47211 * 240.00058 * 18 16 14 22 22 H 1.08996 * 109.47668 * 299.99908 * 1 2 3 23 23 H 1.09007 * 109.47457 * 59.99989 * 1 2 3 24 24 H 1.09003 * 109.47542 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47043 * 240.00072 * 2 1 3 26 26 H 1.09004 * 109.46961 * 60.00021 * 3 2 1 27 27 H 1.09001 * 109.47275 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.47439 * 300.00366 * 3 2 1 29 29 H 1.07998 * 120.09351 * 359.97392 * 7 6 5 30 30 H 1.08002 * 119.75628 * 180.02562 * 8 7 6 31 31 H 1.08006 * 120.09811 * 179.69810 * 11 9 8 32 32 H 0.97008 * 119.99696 * 177.98771 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7780 -0.3519 2.4546 6 6 2.3834 -1.2087 3.3191 7 6 2.4384 -1.2884 4.7126 8 6 3.1532 -2.3006 5.3127 9 6 3.8206 -3.2447 4.5425 10 9 4.5175 -4.2325 5.1458 11 6 3.7793 -3.1770 3.1632 12 6 3.0593 -2.1661 2.5436 13 7 2.8207 -1.8256 1.2237 14 6 3.2877 -2.4867 0.1144 15 1 3.5323 -1.9338 -0.7805 16 6 3.4454 -3.8664 0.1434 17 7 2.8031 -4.5824 1.0384 18 14 4.5707 -4.7039 -1.0902 19 1 5.1718 -3.6825 -1.9851 20 1 5.6486 -5.4251 -0.3670 21 1 3.7857 -5.6702 -1.9000 22 1 -0.3634 0.5138 0.8899 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8932 -0.5138 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 3.1300 1.4424 0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.9216 -0.5580 5.3175 30 1 3.1948 -2.3616 6.3902 31 1 4.3039 -3.9106 2.5689 32 1 2.8904 -5.5486 1.0401 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075975003.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:12 Heat of formation + Delta-G solvation = -8.062393 kcal Electronic energy + Delta-G solvation = -18036.078223 eV Core-core repulsion = 15103.443865 eV Total energy + Delta-G solvation = -2932.634358 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.69514 -42.70258 -38.01364 -36.26519 -35.38942 -33.12616 -31.14335 -29.19198 -27.95739 -27.18475 -24.65712 -23.08510 -22.50419 -20.71317 -19.61458 -18.48474 -17.66245 -17.03085 -16.69344 -16.43135 -15.84221 -15.76275 -15.44512 -15.00815 -14.72152 -14.05046 -13.86990 -13.79003 -13.55111 -13.21632 -13.02689 -12.93700 -12.33803 -12.29591 -12.22628 -12.10677 -11.87695 -11.68282 -11.31289 -10.82726 -10.63744 -9.21621 -8.72033 -8.59772 -6.50430 0.13684 0.73430 1.30979 1.35701 1.49389 1.99942 2.13441 2.63550 2.81024 3.05085 3.45323 3.60054 3.97741 4.13214 4.21488 4.32263 4.39237 4.65505 4.73310 4.77667 4.87731 4.98897 5.01700 5.07997 5.12380 5.20398 5.27395 5.39088 5.42188 5.44515 5.57478 5.92808 6.16504 6.22511 6.70202 7.29299 7.44648 8.31734 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.014543 B = 0.012684 C = 0.007291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.903505 B = 2207.055544 C = 3839.294678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.008 4.008 3 C -0.125 4.125 4 C 0.218 3.782 5 N -0.530 5.530 6 C -0.007 4.007 7 C -0.054 4.054 8 C -0.162 4.162 9 C 0.054 3.946 10 F -0.151 7.151 11 C -0.102 4.102 12 C 0.032 3.968 13 N -0.306 5.306 14 C -0.384 4.384 15 H 0.121 0.879 16 C 0.014 3.986 17 N -0.857 5.857 18 Si 0.997 3.003 19 H -0.247 1.247 20 H -0.275 1.275 21 H -0.267 1.267 22 H 0.057 0.943 23 H 0.093 0.907 24 H 0.031 0.969 25 H 0.084 0.916 26 H 0.057 0.943 27 H 0.041 0.959 28 H 0.092 0.908 29 H 0.154 0.846 30 H 0.165 0.835 31 H 0.107 0.893 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 4.936 -1.144 5.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.029 4.029 3 C -0.183 4.183 4 C -0.044 4.044 5 N -0.252 5.252 6 C -0.130 4.130 7 C -0.073 4.073 8 C -0.183 4.183 9 C 0.033 3.967 10 F -0.130 7.130 11 C -0.123 4.123 12 C -0.085 4.085 13 N 0.023 4.977 14 C -0.511 4.511 15 H 0.139 0.861 16 C -0.195 4.195 17 N -0.487 5.487 18 Si 0.817 3.183 19 H -0.170 1.170 20 H -0.200 1.200 21 H -0.192 1.192 22 H 0.076 0.924 23 H 0.112 0.888 24 H 0.050 0.950 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.060 0.940 28 H 0.111 0.889 29 H 0.172 0.828 30 H 0.183 0.817 31 H 0.125 0.875 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.557 5.315 -0.991 5.436 hybrid contribution 1.048 -1.952 -0.547 2.283 sum 0.491 3.363 -1.538 3.730 Atomic orbital electron populations 1.21655 0.92409 1.01022 1.03181 1.19692 0.97074 0.95919 0.90186 1.21687 1.00192 0.93214 1.03238 1.24185 0.93955 0.90545 0.95752 1.70123 1.27063 1.29243 0.98770 1.19508 1.02924 0.95414 0.95157 1.20134 0.98813 0.98462 0.89930 1.20829 1.01236 0.95449 1.00819 1.17327 0.99527 0.90060 0.89832 1.91382 1.77688 1.60512 1.83446 1.19822 1.01993 0.98009 0.92504 1.18641 1.04517 0.99549 0.85760 1.41500 1.32125 1.19861 1.04167 1.20106 1.46626 0.91008 0.93394 0.86134 1.26528 0.96557 0.96802 0.99630 1.70138 1.35234 1.08038 1.35303 0.84840 0.77524 0.78424 0.77501 1.17039 1.20011 1.19150 0.92424 0.88815 0.94960 0.89793 0.92396 0.93998 0.88933 0.82847 0.81739 0.87459 0.90645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 9.17 71.98 0.66 -3.29 16 2 C -0.01 -0.31 3.25 -11.54 -0.04 -0.34 16 3 C -0.13 -3.70 9.17 71.98 0.66 -3.04 16 4 C 0.22 10.27 6.34 137.76 0.87 11.14 16 5 N -0.53 -25.58 11.26 -179.51 -2.02 -27.60 16 6 C -0.01 -0.32 7.22 39.41 0.28 -0.04 16 7 C -0.05 -2.18 10.10 22.49 0.23 -1.95 16 8 C -0.16 -6.16 9.99 22.30 0.22 -5.94 16 9 C 0.05 2.40 7.29 22.42 0.16 2.57 16 10 F -0.15 -6.36 17.26 44.97 0.78 -5.58 16 11 C -0.10 -5.19 8.53 22.36 0.19 -5.00 16 12 C 0.03 1.68 6.15 38.78 0.24 1.92 16 13 N -0.31 -16.09 2.86 -333.12 -0.95 -17.04 16 14 C -0.38 -19.53 9.29 83.99 0.78 -18.75 16 15 H 0.12 5.65 7.36 -2.91 -0.02 5.62 16 16 C 0.01 0.70 4.53 84.92 0.38 1.09 16 17 N -0.86 -45.73 10.61 21.65 0.23 -45.50 16 18 Si 1.00 38.05 29.60 68.60 2.03 40.08 16 19 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 20 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 21 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 22 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 23 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 24 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.08 3.04 6.98 -2.39 -0.02 3.02 16 26 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.15 5.07 8.06 -2.91 -0.02 5.05 16 30 H 0.17 4.79 8.06 -2.91 -0.02 4.77 16 31 H 0.11 5.78 6.28 -2.91 -0.02 5.76 16 32 H 0.28 14.09 8.31 -92.70 -0.77 13.32 16 Total: -1.00 -62.44 277.84 5.84 -56.60 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 1.13 Total: 20.67 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 4.65 Total: -21.63 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -2.75 Total: -90.14 kcal Atomic # 9 Polarization: -6.36 SS G_CDS: 0.78 Total: -5.58 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -62.44 5.84 -56.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075975003.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.538 kcal (2) G-P(sol) polarization free energy of solvation -62.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds