Wall clock time and date at job start Mon Mar 30 2020 06:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46893 * 109.47031 * 2 1 4 4 C 1.46907 * 111.00042 * 75.85721 * 3 2 1 5 5 C 1.50703 * 109.47210 * 199.29430 * 4 3 2 6 6 H 1.08001 * 119.99669 * 355.16511 * 5 4 3 7 7 C 1.37879 * 119.99600 * 175.15940 * 5 4 3 8 8 N 1.31517 * 119.99422 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00399 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47417 * 89.99419 * 9 7 5 11 11 H 1.48499 * 109.47024 * 210.00111 * 9 7 5 12 12 H 1.48501 * 109.47001 * 329.99627 * 9 7 5 13 13 C 1.39158 * 111.00147 * 199.81047 * 3 2 1 14 14 C 1.38853 * 120.14580 * 295.77416 * 13 3 2 15 15 C 1.38024 * 120.09707 * 179.71890 * 14 13 3 16 16 C 1.38749 * 120.39796 * 0.55537 * 15 14 13 17 17 F 1.35095 * 119.85520 * 179.74332 * 16 15 14 18 18 C 1.37978 * 120.29241 * 359.72065 * 16 15 14 19 19 C 1.39752 * 119.89539 * 0.02562 * 18 16 15 20 20 C 1.43204 * 120.19547 * 180.02562 * 19 18 16 21 21 N 4.44120 * 93.51984 * 317.58666 * 2 1 3 22 22 H 1.09006 * 109.46888 * 174.85046 * 1 2 3 23 23 H 1.08993 * 109.47416 * 294.85135 * 1 2 3 24 24 H 1.09000 * 109.47117 * 54.85501 * 1 2 3 25 25 H 1.08999 * 109.47107 * 240.00000 * 2 1 3 26 26 H 1.08995 * 109.46734 * 120.00220 * 2 1 3 27 27 H 1.09000 * 109.47009 * 79.29274 * 4 3 2 28 28 H 1.08997 * 109.46984 * 319.29562 * 4 3 2 29 29 H 0.97001 * 119.99700 * 180.02562 * 8 7 5 30 30 H 1.07997 * 119.95023 * 359.97438 * 14 13 3 31 31 H 1.07994 * 119.80107 * 180.25663 * 15 14 13 32 32 H 1.07994 * 120.05449 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8792 1.9930 1.3299 5 6 1.9300 3.4939 1.2040 6 1 2.1321 3.9488 0.2455 7 6 1.7183 4.2862 2.3124 8 7 1.7621 5.5960 2.2023 9 14 1.3693 3.4993 3.9701 10 1 2.6488 3.2682 4.6875 11 1 0.5067 4.4016 4.7745 12 1 0.6749 2.2026 3.7662 13 6 3.3383 1.4477 -0.4403 14 6 4.3480 0.8388 0.2929 15 6 5.6547 0.8968 -0.1477 16 6 5.9718 1.5718 -1.3177 17 9 7.2552 1.6261 -1.7362 18 6 4.9821 2.1875 -2.0561 19 6 3.6542 2.1320 -1.6240 20 6 2.6218 2.7683 -2.3856 21 7 1.8027 3.2727 -2.9898 22 1 -0.3633 -1.0236 -0.0922 23 1 -0.3634 0.4319 0.9324 24 1 -0.3633 0.5916 -0.8403 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.6925 1.6545 1.9719 28 1 0.9250 1.6970 1.7658 29 1 1.6136 6.1535 2.9821 30 1 4.1100 0.3156 1.2072 31 1 6.4358 0.4180 0.4242 32 1 5.2331 2.7115 -2.9664 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110877316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:16 Heat of formation + Delta-G solvation = 20.718150 kcal Electronic energy + Delta-G solvation = -17634.822100 eV Core-core repulsion = 14703.435759 eV Total energy + Delta-G solvation = -2931.386340 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -48.77625 -39.78710 -36.56076 -35.73169 -32.65453 -31.29009 -30.99279 -29.09506 -26.81166 -23.83176 -22.78103 -22.50425 -20.11274 -18.98046 -17.04860 -16.54990 -16.17462 -15.89307 -15.51121 -14.92166 -14.20839 -14.07281 -13.74789 -13.56376 -13.23299 -12.94411 -12.61234 -12.45575 -12.18656 -12.05887 -11.67819 -11.54199 -11.49268 -11.15424 -10.97298 -10.79960 -10.28459 -9.94172 -9.43447 -8.93779 -8.65230 -8.29782 -7.86026 -6.10713 -4.09297 0.91409 1.26238 3.20279 3.21638 3.26046 3.28089 3.30269 4.02051 4.21004 4.22753 4.34329 4.57084 4.93008 5.04984 5.20120 5.31649 5.37643 5.58564 5.60127 5.75762 5.82768 6.03117 6.06183 6.20381 6.25193 6.41854 6.57397 6.60254 6.73045 6.83698 7.40252 7.64955 7.88682 8.08897 8.52140 8.98418 9.48296 11.02432 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.008289 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.726372 B = 3377.284475 C = 3667.231748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 N -0.507 5.507 4 C 0.164 3.836 5 C -0.511 4.511 6 H 0.080 0.920 7 C 0.072 3.928 8 N -0.894 5.894 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.174 3.826 14 C -0.125 4.125 15 C -0.116 4.116 16 C 0.080 3.920 17 F -0.141 7.141 18 C -0.104 4.104 19 C 0.019 3.981 20 C 0.277 3.723 21 N -0.416 5.416 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.036 0.964 27 H -0.004 1.004 28 H 0.040 0.960 29 H 0.264 0.736 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.455 -12.937 -3.553 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 N -0.228 5.228 4 C 0.040 3.960 5 C -0.549 4.549 6 H 0.098 0.902 7 C -0.131 4.131 8 N -0.532 5.532 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.076 3.924 14 C -0.145 4.145 15 C -0.136 4.136 16 C 0.061 3.939 17 F -0.119 7.119 18 C -0.126 4.126 19 C 0.015 3.985 20 C -0.038 4.038 21 N -0.091 5.091 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.054 0.946 27 H 0.013 0.987 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.155 0.845 31 H 0.155 0.845 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.869 -11.707 -4.709 13.526 hybrid contribution 0.825 -0.724 1.885 2.182 sum 5.694 -12.431 -2.824 13.962 Atomic orbital electron populations 1.21750 0.94701 1.00628 1.03168 1.22093 0.96583 0.88163 1.00174 1.59546 1.15130 1.16935 1.31232 1.20444 0.96384 0.96580 0.82611 1.20955 1.48597 0.87951 0.97391 0.90242 1.24871 0.94923 0.94694 0.98579 1.69893 1.49636 1.03459 1.30254 0.86926 0.78763 0.79710 0.84732 1.20174 1.21032 1.19113 1.18780 0.90166 0.92277 0.91219 1.21527 0.92149 1.00631 1.00216 1.21115 0.97599 0.99679 0.95253 1.17249 0.78553 1.02351 0.95749 1.91489 1.35347 1.95091 1.90011 1.20935 0.90503 1.00275 1.00887 1.15707 0.88757 0.99826 0.94257 1.24976 0.92823 0.93443 0.92586 1.81106 1.08659 1.08385 1.10909 0.92846 0.92282 0.91799 0.91533 0.94606 0.98671 0.94222 0.92552 0.84517 0.84541 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.96 37.16 0.37 -1.76 16 2 C 0.06 0.85 5.25 -3.82 -0.02 0.83 16 3 N -0.51 -9.71 3.71 -172.20 -0.64 -10.35 16 4 C 0.16 3.64 3.57 -4.97 -0.02 3.62 16 5 C -0.51 -14.01 9.50 -34.44 -0.33 -14.34 16 6 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 7 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 8 N -0.89 -27.08 13.96 55.43 0.77 -26.31 16 9 Si 0.87 20.59 27.57 -169.99 -4.69 15.90 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -5.93 6.41 56.52 0.36 -5.57 16 13 C 0.17 3.02 4.18 -83.52 -0.35 2.67 16 14 C -0.12 -1.82 8.53 -39.43 -0.34 -2.15 16 15 C -0.12 -1.48 10.00 -39.47 -0.39 -1.87 16 16 C 0.08 1.08 7.28 -39.49 -0.29 0.79 16 17 F -0.14 -1.85 17.26 2.25 0.04 -1.81 16 18 C -0.10 -1.47 9.73 -39.11 -0.38 -1.86 16 19 C 0.02 0.32 5.76 -106.62 -0.61 -0.29 16 20 C 0.28 5.39 14.81 -22.47 -0.33 5.06 16 21 N -0.42 -8.81 18.54 41.84 0.78 -8.04 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 0.94 6.90 -51.93 -0.36 0.58 16 24 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.07 0.89 7.91 -51.93 -0.41 0.48 16 26 H 0.04 0.49 7.95 -51.93 -0.41 0.08 16 27 H 0.00 -0.09 6.35 -51.93 -0.33 -0.42 16 28 H 0.04 0.89 5.29 -51.93 -0.27 0.62 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.14 1.80 7.39 -52.49 -0.39 1.41 16 31 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 286.25 15.07 4.31 4.31 Total: -1.00 -30.94 286.25 -5.67 -36.62 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -3.46 Total: -2.96 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.79 Total: -7.37 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: 0.91 Total: -44.69 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.69 Total: 15.90 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.94 -5.67 -36.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110877316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.336 kcal (2) G-P(sol) polarization free energy of solvation -30.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds