Wall clock time and date at job start Mon Mar 30 2020 06:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46893 * 109.47031 * 2 1 4 4 C 1.46907 * 111.00042 * 75.85721 * 3 2 1 5 5 C 1.50703 * 109.47210 * 199.29430 * 4 3 2 6 6 H 1.08001 * 119.99669 * 355.16511 * 5 4 3 7 7 C 1.37879 * 119.99600 * 175.15940 * 5 4 3 8 8 N 1.31517 * 119.99422 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00399 * 0.02562 * 7 5 4 10 10 H 1.48494 * 109.47417 * 89.99419 * 9 7 5 11 11 H 1.48499 * 109.47024 * 210.00111 * 9 7 5 12 12 H 1.48501 * 109.47001 * 329.99627 * 9 7 5 13 13 C 1.39158 * 111.00147 * 199.81047 * 3 2 1 14 14 C 1.38853 * 120.14580 * 295.77416 * 13 3 2 15 15 C 1.38024 * 120.09707 * 179.71890 * 14 13 3 16 16 C 1.38749 * 120.39796 * 0.55537 * 15 14 13 17 17 F 1.35095 * 119.85520 * 179.74332 * 16 15 14 18 18 C 1.37978 * 120.29241 * 359.72065 * 16 15 14 19 19 C 1.39752 * 119.89539 * 0.02562 * 18 16 15 20 20 C 1.43204 * 120.19547 * 180.02562 * 19 18 16 21 21 N 4.44120 * 93.51984 * 317.58666 * 2 1 3 22 22 H 1.09006 * 109.46888 * 174.85046 * 1 2 3 23 23 H 1.08993 * 109.47416 * 294.85135 * 1 2 3 24 24 H 1.09000 * 109.47117 * 54.85501 * 1 2 3 25 25 H 1.08999 * 109.47107 * 240.00000 * 2 1 3 26 26 H 1.08995 * 109.46734 * 120.00220 * 2 1 3 27 27 H 1.09000 * 109.47009 * 79.29274 * 4 3 2 28 28 H 1.08997 * 109.46984 * 319.29562 * 4 3 2 29 29 H 0.97001 * 119.99700 * 180.02562 * 8 7 5 30 30 H 1.07997 * 119.95023 * 359.97438 * 14 13 3 31 31 H 1.07994 * 119.80107 * 180.25663 * 15 14 13 32 32 H 1.07994 * 120.05449 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8792 1.9930 1.3299 5 6 1.9300 3.4939 1.2040 6 1 2.1321 3.9488 0.2455 7 6 1.7183 4.2862 2.3124 8 7 1.7621 5.5960 2.2023 9 14 1.3693 3.4993 3.9701 10 1 2.6488 3.2682 4.6875 11 1 0.5067 4.4016 4.7745 12 1 0.6749 2.2026 3.7662 13 6 3.3383 1.4477 -0.4403 14 6 4.3480 0.8388 0.2929 15 6 5.6547 0.8968 -0.1477 16 6 5.9718 1.5718 -1.3177 17 9 7.2552 1.6261 -1.7362 18 6 4.9821 2.1875 -2.0561 19 6 3.6542 2.1320 -1.6240 20 6 2.6218 2.7683 -2.3856 21 7 1.8027 3.2727 -2.9898 22 1 -0.3633 -1.0236 -0.0922 23 1 -0.3634 0.4319 0.9324 24 1 -0.3633 0.5916 -0.8403 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 2.6925 1.6545 1.9719 28 1 0.9250 1.6970 1.7658 29 1 1.6136 6.1535 2.9821 30 1 4.1100 0.3156 1.2072 31 1 6.4358 0.4180 0.4242 32 1 5.2331 2.7115 -2.9664 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110877316.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:15 Heat of formation + Delta-G solvation = 1.786374 kcal Electronic energy + Delta-G solvation = -17635.643043 eV Core-core repulsion = 14703.435759 eV Total energy + Delta-G solvation = -2932.207284 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.84247 -41.04924 -37.93547 -37.20959 -34.70560 -32.47939 -32.20860 -30.73472 -28.32191 -25.01873 -24.41173 -23.81826 -21.48489 -20.21354 -19.00294 -17.75399 -17.55864 -17.08685 -16.66503 -16.43027 -15.84996 -15.30643 -15.06422 -14.78256 -14.69004 -14.52227 -14.17304 -13.92493 -13.78890 -13.46255 -13.02739 -12.94257 -12.81919 -12.52857 -12.37295 -12.29735 -11.77965 -11.65988 -11.48933 -10.76598 -10.09265 -9.51213 -9.24742 -8.24517 -6.28404 -0.29332 0.11686 1.36561 1.39904 1.48898 1.74719 1.92321 2.36637 2.68103 2.87046 2.95411 3.11080 3.42193 3.85457 4.01104 4.13222 4.24425 4.39041 4.43971 4.64555 4.71424 4.73287 4.93497 4.97099 5.02046 5.09949 5.12253 5.33185 5.37065 5.59148 5.71520 5.92362 6.47905 6.54570 6.62227 6.78941 7.34103 8.92799 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.008289 C = 0.007633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.726372 B = 3377.284475 C = 3667.231748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.531 5.531 4 C 0.175 3.825 5 C -0.512 4.512 6 H 0.028 0.972 7 C 0.005 3.995 8 N -0.952 5.952 9 Si 0.946 3.054 10 H -0.260 1.260 11 H -0.290 1.290 12 H -0.240 1.240 13 C 0.152 3.848 14 C -0.125 4.125 15 C -0.095 4.095 16 C 0.083 3.917 17 F -0.135 7.135 18 C -0.097 4.097 19 C -0.011 4.011 20 C 0.291 3.709 21 N -0.466 5.466 22 H 0.087 0.913 23 H 0.044 0.956 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.059 0.941 27 H 0.014 0.986 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.157 0.843 31 H 0.175 0.825 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.955 -16.005 -1.898 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.071 4.071 3 N -0.253 5.253 4 C 0.050 3.950 5 C -0.550 4.550 6 H 0.046 0.954 7 C -0.192 4.192 8 N -0.593 5.593 9 Si 0.769 3.231 10 H -0.185 1.185 11 H -0.217 1.217 12 H -0.163 1.163 13 C 0.055 3.945 14 C -0.145 4.145 15 C -0.115 4.115 16 C 0.064 3.936 17 F -0.114 7.114 18 C -0.119 4.119 19 C -0.016 4.016 20 C -0.024 4.024 21 N -0.142 5.142 22 H 0.106 0.894 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.078 0.922 27 H 0.032 0.968 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.175 0.825 31 H 0.192 0.808 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.380 -14.815 -3.081 16.422 hybrid contribution 0.456 0.226 1.247 1.347 sum 6.836 -14.589 -1.834 16.215 Atomic orbital electron populations 1.21753 0.94790 1.02181 1.01303 1.22233 0.96480 0.86238 1.02116 1.59302 1.16958 1.19533 1.29498 1.20162 0.96877 0.93138 0.84830 1.21230 1.47415 0.91148 0.95204 0.95393 1.25884 0.94821 0.95035 1.03423 1.70088 1.52010 1.05579 1.31615 0.85743 0.79259 0.79448 0.78676 1.18516 1.21668 1.16322 1.18955 0.90225 0.93502 0.91847 1.21684 0.92019 1.00315 1.00531 1.21478 0.97748 0.97836 0.94445 1.17298 0.78454 1.02010 0.95863 1.91513 1.34869 1.95014 1.90002 1.21076 0.89508 0.99829 1.01480 1.15905 0.89204 1.01346 0.95096 1.25556 0.92598 0.92462 0.91764 1.81082 1.10070 1.10296 1.12731 0.89442 0.93712 0.94170 0.89762 0.92243 0.96818 0.94076 0.92667 0.82497 0.80796 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.96 71.98 0.72 -3.24 16 2 C 0.05 1.51 5.25 86.31 0.45 1.97 16 3 N -0.53 -19.81 3.71 -698.73 -2.59 -22.41 16 4 C 0.17 7.53 3.57 85.56 0.31 7.84 16 5 C -0.51 -28.62 9.50 25.60 0.24 -28.38 16 6 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 7 C 0.01 0.29 5.47 84.65 0.46 0.76 16 8 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 9 Si 0.95 41.88 27.57 68.60 1.89 43.77 16 10 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.24 -9.51 6.41 99.48 0.64 -8.87 16 13 C 0.15 5.09 4.18 38.64 0.16 5.25 16 14 C -0.13 -3.21 8.53 22.37 0.19 -3.02 16 15 C -0.10 -2.02 10.00 22.34 0.22 -1.80 16 16 C 0.08 1.98 7.28 22.33 0.16 2.15 16 17 F -0.14 -3.12 17.26 44.97 0.78 -2.34 16 18 C -0.10 -2.63 9.73 22.57 0.22 -2.41 16 19 C -0.01 -0.37 5.76 -21.16 -0.12 -0.49 16 20 C 0.29 11.78 14.81 88.33 1.31 13.09 16 21 N -0.47 -20.87 18.54 19.00 0.35 -20.52 16 22 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 23 H 0.04 1.35 6.90 -2.39 -0.02 1.33 16 24 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.08 2.03 7.91 -2.39 -0.02 2.01 16 26 H 0.06 1.39 7.95 -2.39 -0.02 1.37 16 27 H 0.01 0.56 6.35 -2.39 -0.02 0.54 16 28 H 0.04 1.77 5.29 -2.39 -0.01 1.75 16 29 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 30 H 0.16 3.37 7.39 -2.91 -0.02 3.35 16 31 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 32 H 0.16 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -70.73 286.25 6.12 -64.61 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.07 Total: 4.59 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 4.33 Total: -8.30 kcal Atomic # 7 Polarization: -100.39 SS G_CDS: -1.94 Total: -102.33 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.78 Total: -2.34 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 1.89 Total: 43.77 kcal Total: -70.73 6.12 -64.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110877316.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.401 kcal (2) G-P(sol) polarization free energy of solvation -70.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds