Wall clock time and date at job start Mon Mar 30 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47239 * 2 1 4 4 C 1.50709 * 109.46826 * 119.99957 * 2 1 3 5 5 H 1.08001 * 119.99522 * 119.99733 * 4 2 1 6 6 C 1.37871 * 119.99791 * 299.99984 * 4 2 1 7 7 N 1.31513 * 120.00159 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99828 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46885 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47602 * 119.99914 * 8 6 4 11 11 H 1.48507 * 109.46821 * 239.99912 * 8 6 4 12 12 N 1.46900 * 109.47320 * 239.99477 * 2 1 3 13 13 C 1.46904 * 110.99458 * 61.07679 * 12 2 1 14 14 C 1.39152 * 111.00327 * 185.03188 * 12 2 1 15 15 C 1.38851 * 120.14492 * 303.24530 * 14 12 2 16 16 C 1.38023 * 120.09830 * 179.97438 * 15 14 12 17 17 C 1.38749 * 120.39718 * 0.02562 * 16 15 14 18 18 F 1.35103 * 119.85311 * 179.97438 * 17 16 15 19 19 C 1.37976 * 120.29501 * 0.02741 * 17 16 15 20 20 C 1.39760 * 119.89270 * 359.65421 * 19 17 16 21 21 C 1.43194 * 120.19705 * 180.34860 * 20 19 17 22 22 N 4.55160 * 103.02141 * 199.35105 * 2 1 3 23 23 H 1.09004 * 109.47474 * 298.35860 * 1 2 3 24 24 H 1.09001 * 109.47014 * 58.35828 * 1 2 3 25 25 H 1.09005 * 109.47610 * 178.35939 * 1 2 3 26 26 H 0.97005 * 119.99715 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47256 * 183.95401 * 13 12 2 28 28 H 1.09001 * 109.47339 * 303.95240 * 13 12 2 29 29 H 1.08999 * 109.46913 * 63.95645 * 13 12 2 30 30 H 1.08000 * 119.95019 * 359.97438 * 15 14 12 31 31 H 1.07998 * 119.80356 * 180.02562 * 16 15 14 32 32 H 1.07997 * 120.05665 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2306 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3223 -1.1195 4.0080 9 1 3.1472 -2.2864 3.6039 10 1 3.1470 -0.1859 4.8162 11 1 1.1674 -1.5865 4.8165 12 7 2.0197 -0.6926 -1.1994 13 6 1.5698 -0.0118 -2.4209 14 6 3.4060 -0.8107 -1.1760 15 6 4.2004 0.3221 -1.0592 16 6 5.5754 0.2038 -1.0356 17 6 6.1743 -1.0443 -1.1286 18 9 7.5212 -1.1473 -1.1049 19 6 5.4006 -2.1806 -1.2463 20 6 4.0071 -2.0756 -1.2648 21 6 3.1977 -3.2513 -1.3792 22 7 2.5555 -4.1840 -1.4694 23 1 -0.3634 0.4881 0.9043 24 1 -0.3633 0.5391 -0.8749 25 1 -0.3634 -1.0273 -0.0294 26 1 0.7094 1.1618 3.4844 27 1 1.8866 -0.5835 -3.2932 28 1 0.4826 0.0672 -2.4135 29 1 2.0063 0.9861 -2.4624 30 1 3.7418 1.2972 -0.9867 31 1 6.1887 1.0880 -0.9441 32 1 5.8709 -3.1501 -1.3189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111026401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:32 Heat of formation + Delta-G solvation = 21.921145 kcal Electronic energy + Delta-G solvation = -17863.070459 eV Core-core repulsion = 14931.736284 eV Total energy + Delta-G solvation = -2931.334174 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.69663 -39.68383 -36.48903 -35.74081 -32.97285 -31.20326 -29.98026 -28.47354 -25.86910 -24.46106 -23.72362 -22.08019 -19.69833 -18.89211 -16.85258 -16.42294 -15.81540 -15.73637 -15.41379 -14.88778 -14.08974 -13.89337 -13.63135 -13.33334 -13.15239 -12.79332 -12.47652 -12.42064 -12.03817 -11.90871 -11.47446 -11.20030 -11.07979 -10.80950 -10.74480 -10.46340 -10.36981 -10.05042 -9.08082 -8.83931 -8.58475 -8.15336 -7.66134 -6.13277 -4.18082 0.99166 1.39007 3.21385 3.24525 3.27767 3.33393 3.38987 4.06289 4.23459 4.30029 4.50386 4.67596 5.01122 5.17067 5.20457 5.51151 5.65297 5.84450 5.89880 5.93466 6.14239 6.24703 6.35160 6.55991 6.70276 6.83658 6.89914 6.96307 7.25511 7.56177 7.69366 7.99027 8.07644 8.10381 8.33822 8.86881 9.47996 10.93085 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.009298 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.505823 B = 3010.676110 C = 3447.486654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.217 3.783 3 H 0.011 0.989 4 C -0.507 4.507 5 H 0.062 0.938 6 C 0.065 3.935 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.520 5.520 13 C 0.029 3.971 14 C 0.189 3.811 15 C -0.114 4.114 16 C -0.114 4.114 17 C 0.074 3.926 18 F -0.143 7.143 19 C -0.106 4.106 20 C 0.002 3.998 21 C 0.283 3.717 22 N -0.427 5.427 23 H 0.090 0.910 24 H 0.012 0.988 25 H 0.035 0.965 26 H 0.262 0.738 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.025 0.975 30 H 0.139 0.861 31 H 0.136 0.864 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.539 1.144 -8.022 11.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.113 3.887 3 H 0.028 0.972 4 C -0.545 4.545 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.242 5.242 13 C -0.118 4.118 14 C 0.091 3.909 15 C -0.135 4.135 16 C -0.135 4.135 17 C 0.055 3.945 18 F -0.121 7.121 19 C -0.128 4.128 20 C -0.003 4.003 21 C -0.033 4.033 22 N -0.102 5.102 23 H 0.109 0.891 24 H 0.031 0.969 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.044 0.956 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.257 -0.657 -8.014 10.188 hybrid contribution 1.010 0.779 1.144 1.713 sum 7.266 0.122 -6.870 10.001 Atomic orbital electron populations 1.21869 0.97035 0.99798 1.00602 1.19453 0.92765 0.92006 0.84465 0.97187 1.21108 1.31281 1.12493 0.89657 0.92026 1.24847 0.94925 0.94926 0.98968 1.69874 1.36573 1.22803 1.23596 0.86512 0.78785 0.79834 0.82878 1.19604 1.20900 1.20902 1.59760 1.05200 1.54470 1.04781 1.22403 1.01768 0.96014 0.91577 1.18715 0.90424 0.90409 0.91306 1.21525 0.92771 0.99914 0.99261 1.21137 0.95543 0.96225 1.00566 1.17237 0.76820 0.94108 1.06335 1.91479 1.29270 1.97000 1.94400 1.20867 0.91812 0.98464 1.01615 1.15720 0.89939 0.87777 1.06846 1.25071 0.92758 0.92037 0.93407 1.81098 1.08140 1.12008 1.08948 0.89119 0.96943 0.94536 0.92838 0.92538 0.90544 0.95633 0.84368 0.84660 0.84225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.75 37.16 0.32 -2.77 16 2 C 0.22 5.00 1.70 -68.86 -0.12 4.89 16 3 H 0.01 0.26 7.14 -51.93 -0.37 -0.11 16 4 C -0.51 -13.15 8.03 -34.44 -0.28 -13.43 16 5 H 0.06 1.65 7.01 -52.49 -0.37 1.29 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.07 11.31 55.43 0.63 -23.44 16 8 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.52 -10.31 3.98 -172.40 -0.69 -10.99 16 13 C 0.03 0.47 9.14 60.07 0.55 1.02 16 14 C 0.19 3.43 3.36 -83.53 -0.28 3.15 16 15 C -0.11 -1.83 8.61 -39.43 -0.34 -2.16 16 16 C -0.11 -1.58 10.00 -39.47 -0.39 -1.98 16 17 C 0.07 1.05 7.28 -39.49 -0.29 0.76 16 18 F -0.14 -1.96 17.26 2.25 0.04 -1.92 16 19 C -0.11 -1.53 9.73 -39.11 -0.38 -1.91 16 20 C 0.00 0.03 5.53 -106.62 -0.59 -0.56 16 21 C 0.28 5.36 14.81 -22.47 -0.33 5.02 16 22 N -0.43 -8.70 18.54 41.84 0.78 -7.92 16 23 H 0.09 2.30 6.03 -51.93 -0.31 1.98 16 24 H 0.01 0.24 6.43 -51.93 -0.33 -0.10 16 25 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.23 6.16 -51.93 -0.32 0.91 16 29 H 0.03 0.38 7.53 -51.93 -0.39 -0.01 16 30 H 0.14 2.15 7.05 -52.49 -0.37 1.78 16 31 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 282.26 15.07 4.25 4.25 Total: -1.00 -27.98 282.26 -5.52 -33.51 By element: Atomic # 1 Polarization: 0.15 SS G_CDS: -3.29 Total: -3.14 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -2.22 Total: -6.35 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.72 Total: -42.36 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -27.98 -5.52 -33.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111026401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.429 kcal (2) G-P(sol) polarization free energy of solvation -27.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds