Wall clock time and date at job start Mon Mar 30 2020 06:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47239 * 2 1 4 4 C 1.50709 * 109.46826 * 119.99957 * 2 1 3 5 5 H 1.08001 * 119.99522 * 119.99733 * 4 2 1 6 6 C 1.37871 * 119.99791 * 299.99984 * 4 2 1 7 7 N 1.31513 * 120.00159 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99828 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46885 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47602 * 119.99914 * 8 6 4 11 11 H 1.48507 * 109.46821 * 239.99912 * 8 6 4 12 12 N 1.46900 * 109.47320 * 239.99477 * 2 1 3 13 13 C 1.46904 * 110.99458 * 61.07679 * 12 2 1 14 14 C 1.39152 * 111.00327 * 185.03188 * 12 2 1 15 15 C 1.38851 * 120.14492 * 303.24530 * 14 12 2 16 16 C 1.38023 * 120.09830 * 179.97438 * 15 14 12 17 17 C 1.38749 * 120.39718 * 0.02562 * 16 15 14 18 18 F 1.35103 * 119.85311 * 179.97438 * 17 16 15 19 19 C 1.37976 * 120.29501 * 0.02741 * 17 16 15 20 20 C 1.39760 * 119.89270 * 359.65421 * 19 17 16 21 21 C 1.43194 * 120.19705 * 180.34860 * 20 19 17 22 22 N 4.55160 * 103.02141 * 199.35105 * 2 1 3 23 23 H 1.09004 * 109.47474 * 298.35860 * 1 2 3 24 24 H 1.09001 * 109.47014 * 58.35828 * 1 2 3 25 25 H 1.09005 * 109.47610 * 178.35939 * 1 2 3 26 26 H 0.97005 * 119.99715 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47256 * 183.95401 * 13 12 2 28 28 H 1.09001 * 109.47339 * 303.95240 * 13 12 2 29 29 H 1.08999 * 109.46913 * 63.95645 * 13 12 2 30 30 H 1.08000 * 119.95019 * 359.97438 * 15 14 12 31 31 H 1.07998 * 119.80356 * 180.02562 * 16 15 14 32 32 H 1.07997 * 120.05665 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2306 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 0.9435 0.8302 2.6033 8 14 2.3223 -1.1195 4.0080 9 1 3.1472 -2.2864 3.6039 10 1 3.1470 -0.1859 4.8162 11 1 1.1674 -1.5865 4.8165 12 7 2.0197 -0.6926 -1.1994 13 6 1.5698 -0.0118 -2.4209 14 6 3.4060 -0.8107 -1.1760 15 6 4.2004 0.3221 -1.0592 16 6 5.5754 0.2038 -1.0356 17 6 6.1743 -1.0443 -1.1286 18 9 7.5212 -1.1473 -1.1049 19 6 5.4006 -2.1806 -1.2463 20 6 4.0071 -2.0756 -1.2648 21 6 3.1977 -3.2513 -1.3792 22 7 2.5555 -4.1840 -1.4694 23 1 -0.3634 0.4881 0.9043 24 1 -0.3633 0.5391 -0.8749 25 1 -0.3634 -1.0273 -0.0294 26 1 0.7094 1.1618 3.4844 27 1 1.8866 -0.5835 -3.2932 28 1 0.4826 0.0672 -2.4135 29 1 2.0063 0.9861 -2.4624 30 1 3.7418 1.2972 -0.9867 31 1 6.1887 1.0880 -0.9441 32 1 5.8709 -3.1501 -1.3189 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111026401.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:32 Heat of formation + Delta-G solvation = 6.936519 kcal Electronic energy + Delta-G solvation = -17863.720241 eV Core-core repulsion = 14931.736284 eV Total energy + Delta-G solvation = -2931.983957 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.81231 -41.02362 -37.97994 -37.19437 -34.84497 -32.44542 -31.58841 -29.95448 -27.54422 -26.12232 -24.95934 -23.52804 -21.30848 -20.15751 -18.58455 -17.69762 -17.37931 -17.04662 -16.61707 -16.46438 -15.73343 -15.19697 -15.10230 -14.72469 -14.64431 -14.16016 -13.91857 -13.81574 -13.74610 -13.33061 -12.98443 -12.78116 -12.65474 -12.50005 -12.32513 -12.26579 -12.16203 -11.83304 -10.95335 -10.55237 -10.05204 -9.44953 -9.17028 -8.13092 -6.22168 -0.26182 0.18064 1.37149 1.41939 1.51038 1.75552 1.94672 2.40337 2.72570 2.91042 3.08323 3.18680 3.45800 3.89150 4.04482 4.29201 4.35634 4.58261 4.64705 4.74648 4.81589 4.96016 4.99040 5.09026 5.11070 5.15772 5.35411 5.49240 5.70007 5.71556 5.80941 6.23849 6.39494 6.55376 6.66175 6.90965 7.46279 8.92321 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017211 B = 0.009298 C = 0.008120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.505823 B = 3010.676110 C = 3447.486654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.225 3.775 3 H -0.004 1.004 4 C -0.512 4.512 5 H 0.048 0.952 6 C 0.025 3.975 7 N -0.911 5.911 8 Si 0.940 3.060 9 H -0.275 1.275 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.534 5.534 13 C 0.029 3.971 14 C 0.168 3.832 15 C -0.122 4.122 16 C -0.098 4.098 17 C 0.080 3.920 18 F -0.136 7.136 19 C -0.093 4.093 20 C -0.016 4.016 21 C 0.294 3.706 22 N -0.463 5.463 23 H 0.065 0.935 24 H 0.038 0.962 25 H 0.021 0.979 26 H 0.262 0.738 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.140 0.860 31 H 0.167 0.833 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.230 1.522 -8.491 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.120 3.880 3 H 0.014 0.986 4 C -0.551 4.551 5 H 0.066 0.934 6 C -0.175 4.175 7 N -0.551 5.551 8 Si 0.767 3.233 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.211 1.211 12 N -0.256 5.256 13 C -0.117 4.117 14 C 0.070 3.930 15 C -0.142 4.142 16 C -0.118 4.118 17 C 0.060 3.940 18 F -0.115 7.115 19 C -0.115 4.115 20 C -0.021 4.021 21 C -0.020 4.020 22 N -0.139 5.139 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.058 0.942 30 H 0.157 0.843 31 H 0.184 0.816 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.960 -0.281 -8.498 11.647 hybrid contribution 0.570 0.680 1.228 1.515 sum 8.529 0.399 -7.270 11.214 Atomic orbital electron populations 1.21712 0.97290 0.98845 1.00575 1.19160 0.92468 0.91110 0.85230 0.98636 1.21291 1.30803 1.11973 0.90993 0.93363 1.25428 0.95355 0.95604 1.01104 1.69961 1.37437 1.23723 1.23961 0.85774 0.78205 0.78894 0.80460 1.19984 1.20057 1.21080 1.59587 1.06766 1.54584 1.04656 1.22469 1.01685 0.96885 0.90696 1.18847 0.89800 0.91410 0.92965 1.21530 0.93592 0.99239 0.99873 1.21413 0.94879 0.97360 0.98138 1.17242 0.77033 0.94041 1.05660 1.91507 1.28734 1.96964 1.94269 1.21060 0.90653 0.99906 0.99878 1.15808 0.90864 0.86751 1.08677 1.25427 0.92250 0.91976 0.92360 1.81094 1.09107 1.13157 1.10532 0.91627 0.94280 0.95964 0.92850 0.90792 0.90767 0.94193 0.84269 0.81578 0.81878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.81 8.75 71.98 0.63 -5.18 16 2 C 0.22 10.37 1.70 44.17 0.08 10.45 16 3 H 0.00 -0.19 7.14 -2.39 -0.02 -0.20 16 4 C -0.51 -26.61 8.03 25.60 0.21 -26.41 16 5 H 0.05 2.60 7.01 -2.91 -0.02 2.58 16 6 C 0.02 1.31 5.30 84.65 0.45 1.75 16 7 N -0.91 -49.51 11.31 21.44 0.24 -49.27 16 8 Si 0.94 42.98 29.54 68.60 2.03 45.00 16 9 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 N -0.53 -20.81 3.98 -699.36 -2.78 -23.59 16 13 C 0.03 0.88 9.14 127.69 1.17 2.05 16 14 C 0.17 5.85 3.36 38.64 0.13 5.98 16 15 C -0.12 -3.66 8.61 22.37 0.19 -3.47 16 16 C -0.10 -2.40 10.00 22.34 0.22 -2.17 16 17 C 0.08 1.98 7.28 22.33 0.16 2.15 16 18 F -0.14 -3.24 17.26 44.97 0.78 -2.46 16 19 C -0.09 -2.47 9.73 22.58 0.22 -2.25 16 20 C -0.02 -0.54 5.53 -21.16 -0.12 -0.66 16 21 C 0.29 11.01 14.81 88.33 1.31 12.31 16 22 N -0.46 -18.86 18.54 19.00 0.35 -18.51 16 23 H 0.07 3.36 6.03 -2.38 -0.01 3.35 16 24 H 0.04 1.54 6.43 -2.39 -0.02 1.52 16 25 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.26 13.65 8.31 -92.70 -0.77 12.88 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.29 6.16 -2.39 -0.01 2.27 16 29 H 0.04 1.11 7.53 -2.39 -0.02 1.09 16 30 H 0.14 4.12 7.05 -2.91 -0.02 4.10 16 31 H 0.17 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -59.28 282.26 6.40 -52.88 By element: Atomic # 1 Polarization: 0.24 SS G_CDS: 1.14 Total: 1.38 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 4.65 Total: -5.43 kcal Atomic # 7 Polarization: -89.18 SS G_CDS: -2.19 Total: -91.37 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.78 Total: -2.46 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -59.28 6.40 -52.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111026401.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.816 kcal (2) G-P(sol) polarization free energy of solvation -59.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds