Wall clock time and date at job start Mon Mar 30 2020 06:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46812 * 2 1 4 4 C 1.50693 * 109.47290 * 240.00095 * 2 1 3 5 5 H 1.08002 * 120.00000 * 239.99684 * 4 2 1 6 6 C 1.37880 * 120.00546 * 59.99452 * 4 2 1 7 7 N 1.31514 * 119.99216 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00394 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47343 * 60.00194 * 8 6 4 10 10 H 1.48501 * 109.47325 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47297 * 300.00033 * 8 6 4 12 12 N 1.46897 * 109.47329 * 119.99890 * 2 1 3 13 13 C 1.46905 * 110.99740 * 299.55610 * 12 2 1 14 14 C 1.39155 * 111.00008 * 175.60519 * 12 2 1 15 15 C 1.38847 * 120.15199 * 60.29965 * 14 12 2 16 16 C 1.38032 * 120.10305 * 180.02562 * 15 14 12 17 17 C 1.38747 * 120.39010 * 0.25233 * 16 15 14 18 18 F 1.35108 * 119.84672 * 179.70411 * 17 16 15 19 19 C 1.37971 * 120.29785 * 359.44509 * 17 16 15 20 20 C 1.39755 * 119.89196 * 0.57249 * 19 17 16 21 21 C 1.43205 * 120.19518 * 179.67952 * 20 19 17 22 22 N 4.50056 * 103.52693 * 163.21852 * 2 1 3 23 23 H 1.09002 * 109.47301 * 65.98041 * 1 2 3 24 24 H 1.09005 * 109.46664 * 185.97962 * 1 2 3 25 25 H 1.08997 * 109.47189 * 305.97825 * 1 2 3 26 26 H 0.97006 * 119.99590 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47007 * 296.04436 * 13 12 2 28 28 H 1.08997 * 109.47128 * 56.04790 * 13 12 2 29 29 H 1.09005 * 109.46989 * 176.04773 * 13 12 2 30 30 H 1.08001 * 119.94695 * 0.02562 * 15 14 12 31 31 H 1.07991 * 119.80292 * 179.97438 * 16 15 14 32 32 H 1.08005 * 120.05759 * 180.29689 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8269 -0.4201 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 7 2.0197 -0.6924 1.1994 13 6 1.5574 -0.0201 2.4210 14 6 3.4071 -0.7978 1.1828 15 6 4.1931 0.3462 1.1484 16 6 5.5693 0.2405 1.1315 17 6 6.1776 -1.0064 1.1434 18 9 7.5255 -1.0972 1.1205 19 6 5.4125 -2.1538 1.1839 20 6 4.0182 -2.0610 1.2009 21 6 3.2177 -3.2479 1.2360 22 7 2.5827 -4.1894 1.2634 23 1 -0.3634 0.4183 -0.9387 24 1 -0.3633 -1.0221 0.1071 25 1 -0.3633 0.6037 0.8316 26 1 0.7094 1.1617 -3.4844 27 1 1.9846 0.9815 2.4684 28 1 0.4696 0.0490 2.4082 29 1 1.8749 -0.5922 3.2929 30 1 3.7270 1.3204 1.1348 31 1 6.1759 1.1335 1.1042 32 1 5.8903 -3.1224 1.1979 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111026404.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:35 Heat of formation + Delta-G solvation = 21.865209 kcal Electronic energy + Delta-G solvation = -17869.563261 eV Core-core repulsion = 14938.226661 eV Total energy + Delta-G solvation = -2931.336600 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.69766 -39.68386 -36.48162 -35.73353 -32.97967 -31.20599 -29.98224 -28.45603 -25.86649 -24.46127 -23.73333 -22.06308 -19.70440 -18.89593 -16.85006 -16.43078 -15.81778 -15.71903 -15.41493 -14.89631 -14.07753 -13.91605 -13.63060 -13.31939 -13.13822 -12.79467 -12.46425 -12.40545 -12.02403 -11.89982 -11.47569 -11.20549 -11.06236 -10.80328 -10.79030 -10.44933 -10.37703 -10.04451 -9.11216 -8.84342 -8.55608 -8.14276 -7.67634 -6.12456 -4.17725 0.99229 1.38571 3.22949 3.27206 3.29115 3.32161 3.36912 4.06907 4.23942 4.30304 4.50723 4.67600 5.00770 5.16380 5.20915 5.50266 5.65369 5.84730 5.89243 5.92923 6.14009 6.25788 6.34120 6.56208 6.68957 6.84478 6.89889 6.95997 7.24357 7.56608 7.69267 8.00199 8.08481 8.11767 8.34283 8.86616 9.48187 10.93577 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.009288 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.305067 B = 3013.891745 C = 3422.426978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.218 3.782 3 H 0.010 0.990 4 C -0.508 4.508 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.890 5.890 8 Si 0.892 3.108 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.520 5.520 13 C 0.029 3.971 14 C 0.189 3.811 15 C -0.117 4.117 16 C -0.114 4.114 17 C 0.075 3.925 18 F -0.143 7.143 19 C -0.106 4.106 20 C 0.004 3.996 21 C 0.282 3.718 22 N -0.426 5.426 23 H 0.092 0.908 24 H 0.035 0.965 25 H 0.011 0.989 26 H 0.263 0.737 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.502 1.155 8.192 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.115 3.885 3 H 0.028 0.972 4 C -0.546 4.546 5 H 0.078 0.922 6 C -0.136 4.136 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.242 5.242 13 C -0.118 4.118 14 C 0.091 3.909 15 C -0.137 4.137 16 C -0.135 4.135 17 C 0.055 3.945 18 F -0.121 7.121 19 C -0.127 4.127 20 C -0.001 4.001 21 C -0.033 4.033 22 N -0.101 5.101 23 H 0.110 0.890 24 H 0.054 0.946 25 H 0.030 0.970 26 H 0.073 0.927 27 H 0.044 0.956 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.231 -0.655 8.075 10.221 hybrid contribution 1.017 0.790 -1.083 1.683 sum 7.248 0.135 6.992 10.072 Atomic orbital electron populations 1.21874 0.97066 0.99141 1.01318 1.19432 0.92725 0.91953 0.84398 0.97201 1.21031 1.31404 1.12524 0.89690 0.92155 1.24845 0.94922 0.94926 0.98944 1.69854 1.36434 1.22754 1.23811 0.86629 0.79367 0.79960 0.82053 1.20119 1.21170 1.20049 1.59789 1.04851 1.54848 1.04746 1.22405 1.01694 0.96094 0.91618 1.18714 0.90481 0.90396 0.91266 1.21516 0.92872 0.99738 0.99612 1.21130 0.95441 0.96268 1.00618 1.17234 0.76803 0.94032 1.06407 1.91481 1.29176 1.97108 1.94378 1.20874 0.91887 0.98396 1.01582 1.15722 0.89970 0.87656 1.06717 1.25057 0.92774 0.92001 0.93464 1.81094 1.08071 1.12169 1.08771 0.88959 0.94604 0.96980 0.92717 0.95646 0.90585 0.92528 0.84440 0.84667 0.84201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.64 37.16 0.32 -2.81 16 2 C 0.22 5.06 1.76 -68.87 -0.12 4.94 16 3 H 0.01 0.25 7.29 -51.93 -0.38 -0.12 16 4 C -0.51 -13.23 8.04 -34.44 -0.28 -13.51 16 5 H 0.06 1.61 6.90 -52.49 -0.36 1.25 16 6 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 7 N -0.89 -24.15 11.29 55.43 0.63 -23.53 16 8 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.52 -10.32 3.98 -172.41 -0.69 -11.01 16 13 C 0.03 0.46 9.10 60.07 0.55 1.01 16 14 C 0.19 3.43 3.45 -83.53 -0.29 3.14 16 15 C -0.12 -1.86 8.59 -39.43 -0.34 -2.19 16 16 C -0.11 -1.58 10.01 -39.47 -0.39 -1.97 16 17 C 0.07 1.05 7.28 -39.49 -0.29 0.77 16 18 F -0.14 -1.96 17.26 2.25 0.04 -1.92 16 19 C -0.11 -1.53 9.73 -39.11 -0.38 -1.91 16 20 C 0.00 0.07 5.35 -106.62 -0.57 -0.50 16 21 C 0.28 5.39 14.81 -22.47 -0.33 5.06 16 22 N -0.43 -8.76 18.54 41.84 0.78 -7.98 16 23 H 0.09 2.35 5.93 -51.93 -0.31 2.04 16 24 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.01 0.23 6.66 -51.93 -0.35 -0.11 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.03 0.37 7.31 -51.93 -0.38 -0.01 16 28 H 0.08 1.22 6.24 -51.93 -0.32 0.90 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.14 2.10 7.04 -52.49 -0.37 1.73 16 31 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 282.06 15.07 4.25 4.25 Total: -1.00 -28.07 282.06 -5.53 -33.60 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -3.29 Total: -3.15 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: -2.22 Total: -6.34 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.72 Total: -42.51 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.07 -5.53 -33.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111026404.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.462 kcal (2) G-P(sol) polarization free energy of solvation -28.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds