Wall clock time and date at job start Mon Mar 30 2020 06:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46812 * 2 1 4 4 C 1.50693 * 109.47290 * 240.00095 * 2 1 3 5 5 H 1.08002 * 120.00000 * 239.99684 * 4 2 1 6 6 C 1.37880 * 120.00546 * 59.99452 * 4 2 1 7 7 N 1.31514 * 119.99216 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00394 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47343 * 60.00194 * 8 6 4 10 10 H 1.48501 * 109.47325 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47297 * 300.00033 * 8 6 4 12 12 N 1.46897 * 109.47329 * 119.99890 * 2 1 3 13 13 C 1.46905 * 110.99740 * 299.55610 * 12 2 1 14 14 C 1.39155 * 111.00008 * 175.60519 * 12 2 1 15 15 C 1.38847 * 120.15199 * 60.29965 * 14 12 2 16 16 C 1.38032 * 120.10305 * 180.02562 * 15 14 12 17 17 C 1.38747 * 120.39010 * 0.25233 * 16 15 14 18 18 F 1.35108 * 119.84672 * 179.70411 * 17 16 15 19 19 C 1.37971 * 120.29785 * 359.44509 * 17 16 15 20 20 C 1.39755 * 119.89196 * 0.57249 * 19 17 16 21 21 C 1.43205 * 120.19518 * 179.67952 * 20 19 17 22 22 N 4.50056 * 103.52693 * 163.21852 * 2 1 3 23 23 H 1.09002 * 109.47301 * 65.98041 * 1 2 3 24 24 H 1.09005 * 109.46664 * 185.97962 * 1 2 3 25 25 H 1.08997 * 109.47189 * 305.97825 * 1 2 3 26 26 H 0.97006 * 119.99590 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47007 * 296.04436 * 13 12 2 28 28 H 1.08997 * 109.47128 * 56.04790 * 13 12 2 29 29 H 1.09005 * 109.46989 * 176.04773 * 13 12 2 30 30 H 1.08001 * 119.94695 * 0.02562 * 15 14 12 31 31 H 1.07991 * 119.80292 * 179.97438 * 16 15 14 32 32 H 1.08005 * 120.05759 * 180.29689 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8269 -0.4201 -5.2204 11 1 3.8064 -1.1209 -4.0082 12 7 2.0197 -0.6924 1.1994 13 6 1.5574 -0.0201 2.4210 14 6 3.4071 -0.7978 1.1828 15 6 4.1931 0.3462 1.1484 16 6 5.5693 0.2405 1.1315 17 6 6.1776 -1.0064 1.1434 18 9 7.5255 -1.0972 1.1205 19 6 5.4125 -2.1538 1.1839 20 6 4.0182 -2.0610 1.2009 21 6 3.2177 -3.2479 1.2360 22 7 2.5827 -4.1894 1.2634 23 1 -0.3634 0.4183 -0.9387 24 1 -0.3633 -1.0221 0.1071 25 1 -0.3633 0.6037 0.8316 26 1 0.7094 1.1617 -3.4844 27 1 1.9846 0.9815 2.4684 28 1 0.4696 0.0490 2.4082 29 1 1.8749 -0.5922 3.2929 30 1 3.7270 1.3204 1.1348 31 1 6.1759 1.1335 1.1042 32 1 5.8903 -3.1224 1.1979 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111026404.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:34 Heat of formation + Delta-G solvation = 6.774549 kcal Electronic energy + Delta-G solvation = -17870.217641 eV Core-core repulsion = 14938.226661 eV Total energy + Delta-G solvation = -2931.990980 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 248.102 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.81329 -41.02181 -37.97367 -37.19603 -34.85418 -32.44580 -31.59457 -29.93460 -27.54348 -26.12274 -24.96847 -23.50914 -21.31754 -20.16134 -18.58062 -17.70913 -17.35839 -17.05166 -16.62538 -16.47360 -15.71847 -15.21202 -15.10234 -14.71951 -14.63264 -14.16628 -13.91872 -13.80085 -13.71385 -13.32859 -12.98539 -12.77910 -12.67956 -12.50783 -12.33445 -12.26303 -12.15701 -11.82892 -10.98584 -10.53632 -10.05365 -9.41801 -9.20139 -8.12852 -6.22334 -0.26045 0.17732 1.39449 1.41675 1.47789 1.76336 1.94875 2.40159 2.72777 2.91038 3.09201 3.18592 3.45822 3.88986 4.04340 4.29074 4.35581 4.59333 4.64618 4.74432 4.81879 4.97666 4.98974 5.08834 5.09756 5.14963 5.35600 5.48084 5.69123 5.71415 5.81263 6.24664 6.39882 6.55696 6.66780 6.90522 7.45940 8.91950 Molecular weight = 248.10amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.009288 C = 0.008179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.305067 B = 3013.891745 C = 3422.426978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.227 3.773 3 H -0.005 1.005 4 C -0.514 4.514 5 H 0.048 0.952 6 C 0.025 3.975 7 N -0.911 5.911 8 Si 0.939 3.061 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.268 1.268 12 N -0.534 5.534 13 C 0.028 3.972 14 C 0.167 3.833 15 C -0.124 4.124 16 C -0.098 4.098 17 C 0.079 3.921 18 F -0.136 7.136 19 C -0.094 4.094 20 C -0.015 4.015 21 C 0.294 3.706 22 N -0.463 5.463 23 H 0.066 0.934 24 H 0.022 0.978 25 H 0.037 0.963 26 H 0.262 0.738 27 H 0.040 0.960 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.167 0.833 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.227 1.618 8.721 12.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.122 3.878 3 H 0.013 0.987 4 C -0.553 4.553 5 H 0.067 0.933 6 C -0.175 4.175 7 N -0.550 5.550 8 Si 0.765 3.235 9 H -0.209 1.209 10 H -0.206 1.206 11 H -0.193 1.193 12 N -0.256 5.256 13 C -0.118 4.118 14 C 0.069 3.931 15 C -0.144 4.144 16 C -0.118 4.118 17 C 0.060 3.940 18 F -0.115 7.115 19 C -0.115 4.115 20 C -0.020 4.020 21 C -0.020 4.020 22 N -0.139 5.139 23 H 0.084 0.916 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.159 0.841 31 H 0.185 0.815 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.971 -0.193 8.621 11.743 hybrid contribution 0.566 0.664 -1.181 1.469 sum 8.537 0.471 7.440 11.334 Atomic orbital electron populations 1.21715 0.97309 0.98525 1.00965 1.19137 0.92438 0.91023 0.85199 0.98723 1.21246 1.30937 1.12053 0.91028 0.93350 1.25428 0.95359 0.95604 1.01086 1.69945 1.37302 1.23687 1.24093 0.85903 0.79196 0.78554 0.79831 1.20947 1.20636 1.19339 1.59606 1.06426 1.54976 1.04624 1.22473 1.01577 0.97011 0.90727 1.18852 0.89855 0.91419 0.92940 1.21543 0.93672 0.99095 1.00084 1.21417 0.94790 0.97426 0.98128 1.17250 0.77014 0.93991 1.05731 1.91509 1.28652 1.97075 1.94248 1.21063 0.90732 0.99863 0.99879 1.15819 0.90904 0.86626 1.08612 1.25432 0.92238 0.91961 0.92372 1.81090 1.09087 1.13358 1.10410 0.91559 0.95846 0.94393 0.92821 0.94161 0.90851 0.90732 0.84107 0.81513 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.87 8.64 71.98 0.62 -5.24 16 2 C 0.23 10.48 1.76 44.17 0.08 10.56 16 3 H 0.00 -0.23 7.29 -2.38 -0.02 -0.25 16 4 C -0.51 -26.81 8.04 25.60 0.21 -26.61 16 5 H 0.05 2.60 6.90 -2.91 -0.02 2.58 16 6 C 0.02 1.32 5.29 84.66 0.45 1.77 16 7 N -0.91 -49.67 11.29 21.45 0.24 -49.43 16 8 Si 0.94 43.08 29.54 68.60 2.03 45.11 16 9 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 N -0.53 -20.82 3.98 -699.38 -2.78 -23.60 16 13 C 0.03 0.87 9.10 127.69 1.16 2.03 16 14 C 0.17 5.83 3.45 38.63 0.13 5.96 16 15 C -0.12 -3.66 8.59 22.37 0.19 -3.47 16 16 C -0.10 -2.37 10.01 22.34 0.22 -2.14 16 17 C 0.08 1.98 7.28 22.33 0.16 2.14 16 18 F -0.14 -3.25 17.26 44.97 0.78 -2.47 16 19 C -0.09 -2.49 9.73 22.57 0.22 -2.27 16 20 C -0.02 -0.50 5.35 -21.16 -0.11 -0.61 16 21 C 0.29 11.11 14.81 88.33 1.31 12.42 16 22 N -0.46 -19.09 18.54 19.00 0.35 -18.74 16 23 H 0.07 3.42 5.93 -2.39 -0.01 3.40 16 24 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.04 1.50 6.66 -2.39 -0.02 1.48 16 26 H 0.26 13.78 8.31 -92.70 -0.77 13.01 16 27 H 0.04 1.11 7.31 -2.39 -0.02 1.10 16 28 H 0.07 2.26 6.24 -2.39 -0.01 2.25 16 29 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.14 4.04 7.04 -2.91 -0.02 4.02 16 31 H 0.17 2.97 8.06 -2.92 -0.02 2.95 16 32 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -59.57 282.06 6.40 -53.17 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: 1.14 Total: 1.41 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: 4.64 Total: -5.46 kcal Atomic # 7 Polarization: -89.58 SS G_CDS: -2.19 Total: -91.77 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -59.57 6.40 -53.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111026404.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.949 kcal (2) G-P(sol) polarization free energy of solvation -59.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds